EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000036687 (Gene tree)
Gene ID: 690585
Gene Symbol: Alyref
Alias: LOC690585|Thoc4
Full Name: Aly/REF export factor
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 3764 bases
Position: chr10:109770876-109774639
Accession: 1594679
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000051838	RRM_1	PF00076.22	1.1e-12	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000054955	-	1335	XM_006247925	ENSRNOP00000051838	189 (aa)	XP_006247987	D3ZXH7

Gene Model

Click here to download ENSRNOG00000036687's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03013	RNA transport	KEGG
rno03015	mRNA surveillance pathway	KEGG
rno03040	Spliceosome	KEGG
rno05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000036687's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000036687	Alyref	91	98.256	ENSG00000183684	ALYREF	65	98.256	Homo_sapiens
ENSRNOG00000036687	Alyref	91	72.340	ENSAPOG00000018455	ALYREF	67	73.016	Acanthochromis_polyacanthus
ENSRNOG00000036687	Alyref	91	73.446	ENSACAG00000010526	ALYREF	68	70.391	Anolis_carolinensis
ENSRNOG00000036687	Alyref	91	78.488	ENSANAG00000028229	-	52	82.659	Aotus_nancymaae
ENSRNOG00000036687	Alyref	91	98.256	ENSBTAG00000008498	ALYREF	67	98.256	Bos_taurus
ENSRNOG00000036687	Alyref	100	96.825	ENSCJAG00000039942	ALYREF	100	96.825	Callithrix_jacchus
ENSRNOG00000036687	Alyref	91	97.093	ENSCAFG00000005877	ALYREF	67	97.093	Canis_familiaris
ENSRNOG00000036687	Alyref	91	97.093	ENSCAFG00020009815	ALYREF	67	97.093	Canis_lupus_dingo
ENSRNOG00000036687	Alyref	91	98.256	ENSCHIG00000017396	ALYREF	64	98.256	Capra_hircus
ENSRNOG00000036687	Alyref	91	98.256	ENSCPOG00000013710	ALYREF	67	98.256	Cavia_porcellus
ENSRNOG00000036687	Alyref	93	84.000	ENSCCAG00000030237	-	85	81.143	Cebus_capucinus
ENSRNOG00000036687	Alyref	100	96.825	ENSCCAG00000020578	-	100	96.825	Cebus_capucinus
ENSRNOG00000036687	Alyref	100	97.354	ENSCATG00000033169	ALYREF	100	97.354	Cercocebus_atys
ENSRNOG00000036687	Alyref	91	84.884	ENSCLAG00000015026	ALYREF	65	84.393	Chinchilla_lanigera
ENSRNOG00000036687	Alyref	91	97.674	ENSCSAG00000002216	ALYREF	65	97.674	Chlorocebus_sabaeus
ENSRNOG00000036687	Alyref	87	75.758	ENSCANG00000034056	ALYREF	69	98.214	Colobus_angolensis_palliatus
ENSRNOG00000036687	Alyref	91	97.093	ENSCGRG00001018191	-	67	97.093	Cricetulus_griseus_chok1gshd
ENSRNOG00000036687	Alyref	100	52.284	ENSCSEG00000015438	-	100	51.456	Cynoglossus_semilaevis
ENSRNOG00000036687	Alyref	91	98.256	ENSEASG00005005824	ALYREF	64	98.256	Equus_asinus_asinus
ENSRNOG00000036687	Alyref	91	98.256	ENSECAG00000018754	ALYREF	64	98.256	Equus_caballus
ENSRNOG00000036687	Alyref	91	97.093	ENSEEUG00000010164	ALYREF	100	97.093	Erinaceus_europaeus
ENSRNOG00000036687	Alyref	91	98.256	ENSFCAG00000022549	ALYREF	65	98.256	Felis_catus
ENSRNOG00000036687	Alyref	65	85.484	ENSFDAG00000001213	ALYREF	57	81.746	Fukomys_damarensis
ENSRNOG00000036687	Alyref	91	79.885	ENSGALG00000007237	ALYREF	67	78.857	Gallus_gallus
ENSRNOG00000036687	Alyref	91	74.157	ENSGACG00000013328	ALYREF	67	74.302	Gasterosteus_aculeatus
ENSRNOG00000036687	Alyref	91	79.545	ENSGAGG00000008536	ALYREF	67	77.401	Gopherus_agassizii
ENSRNOG00000036687	Alyref	100	97.884	ENSGGOG00000013935	ALYREF	100	97.884	Gorilla_gorilla
ENSRNOG00000036687	Alyref	100	96.825	ENSHGLG00000008293	ALYREF	100	96.825	Heterocephalus_glaber_female
ENSRNOG00000036687	Alyref	91	67.978	ENSHCOG00000015046	ALYREF	67	71.892	Hippocampus_comes
ENSRNOG00000036687	Alyref	91	97.674	ENSJJAG00000004134	-	67	97.674	Jaculus_jaculus
ENSRNOG00000036687	Alyref	91	74.157	ENSLACG00000005694	ALYREF	67	73.743	Latimeria_chalumnae
ENSRNOG00000036687	Alyref	54	100.000	ENSLAFG00000003083	ALYREF	55	100.000	Loxodonta_africana
ENSRNOG00000036687	Alyref	91	94.186	ENSMFAG00000001394	ALYREF	64	94.186	Macaca_fascicularis
ENSRNOG00000036687	Alyref	100	97.354	ENSMMUG00000012884	ALYREF	100	97.354	Macaca_mulatta
ENSRNOG00000036687	Alyref	100	97.354	ENSMNEG00000043666	ALYREF	96	97.354	Macaca_nemestrina
ENSRNOG00000036687	Alyref	91	69.886	ENSMAUG00000020552	-	66	69.942	Mesocricetus_auratus
ENSRNOG00000036687	Alyref	100	96.825	ENSMICG00000017403	ALYREF	100	96.825	Microcebus_murinus
ENSRNOG00000036687	Alyref	91	79.096	ENSMOCG00000016792	-	68	75.138	Microtus_ochrogaster
ENSRNOG00000036687	Alyref	91	93.642	ENSMODG00000003030	ALYREF	57	94.253	Monodelphis_domestica
ENSRNOG00000036687	Alyref	91	68.817	ENSMALG00000019408	ALYREF	67	71.658	Monopterus_albus
ENSRNOG00000036687	Alyref	91	76.744	MGP_CAROLIEiJ_G0014874	Alyref2	64	71.676	Mus_caroli
ENSRNOG00000036687	Alyref	91	99.419	MGP_CAROLIEiJ_G0017529	Alyref	67	99.419	Mus_caroli
ENSRNOG00000036687	Alyref	91	65.698	ENSMUSG00000096744	Gm4307	52	63.006	Mus_musculus
ENSRNOG00000036687	Alyref	91	60.465	ENSMUSG00000117091	AC153137.1	62	57.803	Mus_musculus
ENSRNOG00000036687	Alyref	91	65.698	ENSMUSG00000097550	Gm21304	57	61.272	Mus_musculus
ENSRNOG00000036687	Alyref	91	99.419	ENSMUSG00000025134	Alyref	67	99.419	Mus_musculus
ENSRNOG00000036687	Alyref	91	65.698	ENSMUSG00000097878	Gm8764	98	60.843	Mus_musculus
ENSRNOG00000036687	Alyref	91	65.698	ENSMUSG00000094144	Gm21312	57	61.272	Mus_musculus
ENSRNOG00000036687	Alyref	91	76.744	ENSMUSG00000060244	Alyref2	65	73.988	Mus_musculus
ENSRNOG00000036687	Alyref	91	63.953	ENSMUSG00000096640	Gm4312	52	61.272	Mus_musculus
ENSRNOG00000036687	Alyref	91	65.698	ENSMUSG00000097427	Gm6763	98	60.843	Mus_musculus
ENSRNOG00000036687	Alyref	91	65.698	ENSMUSG00000095022	Gm20765	57	61.272	Mus_musculus
ENSRNOG00000036687	Alyref	91	65.698	ENSMUSG00000091101	Gm4302	51	63.006	Mus_musculus
ENSRNOG00000036687	Alyref	91	63.953	ENSMUSG00000094314	Gm4301	52	61.272	Mus_musculus
ENSRNOG00000036687	Alyref	91	65.698	ENSMUSG00000091779	Gm21293	57	61.272	Mus_musculus
ENSRNOG00000036687	Alyref	91	60.465	ENSMUSG00000086727	4931428L18Rik	62	57.803	Mus_musculus
ENSRNOG00000036687	Alyref	91	65.698	ENSMUSG00000112856	Gm4305	52	63.006	Mus_musculus
ENSRNOG00000036687	Alyref	91	65.698	ENSMUSG00000090854	Gm4340	57	61.272	Mus_musculus
ENSRNOG00000036687	Alyref	91	65.698	ENSMUSG00000112931	Gm4303	52	63.006	Mus_musculus
ENSRNOG00000036687	Alyref	91	64.535	MGP_PahariEiJ_G0027254	-	68	61.850	Mus_pahari
ENSRNOG00000036687	Alyref	91	64.535	MGP_PahariEiJ_G0027255	-	67	61.850	Mus_pahari
ENSRNOG00000036687	Alyref	91	99.419	MGP_PahariEiJ_G0018655	-	67	99.419	Mus_pahari
ENSRNOG00000036687	Alyref	89	99.405	MGP_PahariEiJ_G0018656	-	88	99.405	Mus_pahari
ENSRNOG00000036687	Alyref	91	99.419	MGP_SPRETEiJ_G0018373	Alyref	67	99.419	Mus_spretus
ENSRNOG00000036687	Alyref	91	77.326	MGP_SPRETEiJ_G0015679	Alyref2	65	72.254	Mus_spretus
ENSRNOG00000036687	Alyref	91	65.116	ENSMLUG00000025677	-	50	63.584	Myotis_lucifugus
ENSRNOG00000036687	Alyref	91	66.860	ENSMLUG00000027516	-	52	65.318	Myotis_lucifugus
ENSRNOG00000036687	Alyref	90	57.310	ENSMLUG00000015043	-	63	52.778	Myotis_lucifugus
ENSRNOG00000036687	Alyref	97	59.259	ENSMLUG00000024976	-	58	54.974	Myotis_lucifugus
ENSRNOG00000036687	Alyref	97	60.317	ENSMLUG00000026271	-	58	58.421	Myotis_lucifugus
ENSRNOG00000036687	Alyref	91	63.372	ENSMLUG00000030407	-	50	61.850	Myotis_lucifugus
ENSRNOG00000036687	Alyref	90	58.480	ENSMLUG00000024471	-	52	53.889	Myotis_lucifugus
ENSRNOG00000036687	Alyref	91	62.791	ENSMLUG00000027352	-	51	63.006	Myotis_lucifugus
ENSRNOG00000036687	Alyref	97	57.143	ENSMLUG00000024447	-	56	56.842	Myotis_lucifugus
ENSRNOG00000036687	Alyref	90	60.819	ENSMLUG00000022869	-	53	55.000	Myotis_lucifugus
ENSRNOG00000036687	Alyref	91	68.391	ENSMLUG00000002626	-	66	66.286	Myotis_lucifugus
ENSRNOG00000036687	Alyref	100	97.884	ENSNLEG00000010313	ALYREF	100	97.884	Nomascus_leucogenys
ENSRNOG00000036687	Alyref	76	63.889	ENSMEUG00000002210	ALYREF	63	63.889	Notamacropus_eugenii
ENSRNOG00000036687	Alyref	91	97.143	ENSODEG00000008359	ALYREF	67	97.143	Octodon_degus
ENSRNOG00000036687	Alyref	91	69.149	ENSORLG00000012331	ALYREF	68	71.429	Oryzias_latipes
ENSRNOG00000036687	Alyref	91	98.256	ENSPPRG00000010829	ALYREF	65	98.256	Panthera_pardus
ENSRNOG00000036687	Alyref	50	98.936	ENSPTIG00000006399	ALYREF	64	93.204	Panthera_tigris_altaica
ENSRNOG00000036687	Alyref	100	97.884	ENSPTRG00000009774	ALYREF	100	97.884	Pan_troglodytes
ENSRNOG00000036687	Alyref	100	97.354	ENSPANG00000019265	ALYREF	100	97.354	Papio_anubis
ENSRNOG00000036687	Alyref	91	97.674	ENSPPYG00000008749	ALYREF	65	97.674	Pongo_abelii
ENSRNOG00000036687	Alyref	100	96.825	ENSPCOG00000020874	ALYREF	100	96.825	Propithecus_coquereli
ENSRNOG00000036687	Alyref	91	73.837	ENSPVAG00000017866	ALYREF	67	73.837	Pteropus_vampyrus
ENSRNOG00000036687	Alyref	86	88.957	ENSRROG00000045364	ALYREF	80	97.183	Rhinopithecus_roxellana
ENSRNOG00000036687	Alyref	91	56.667	ENSSDUG00000003992	-	63	56.906	Seriola_dumerili
ENSRNOG00000036687	Alyref	91	56.667	ENSSLDG00000005386	-	64	56.906	Seriola_lalandi_dorsalis
ENSRNOG00000036687	Alyref	91	80.226	ENSSPUG00000004600	ALYREF	67	76.966	Sphenodon_punctatus
ENSRNOG00000036687	Alyref	91	71.277	ENSSPAG00000011178	ALYREF	65	71.958	Stegastes_partitus
ENSRNOG00000036687	Alyref	91	97.093	ENSSSCG00000032655	ALYREF	67	97.093	Sus_scrofa
ENSRNOG00000036687	Alyref	91	70.270	ENSTRUG00000008828	ALYREF	68	70.968	Takifugu_rubripes
ENSRNOG00000036687	Alyref	91	95.930	ENSTTRG00000012275	ALYREF	67	95.930	Tursiops_truncatus
ENSRNOG00000036687	Alyref	91	74.444	ENSXETG00000005391	alyref	68	72.826	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000018	regulation of DNA recombination	-	ISO	Process
GO:0000346	transcription export complex	-	ISO	Component
GO:0000784	nuclear chromosome, telomeric region	-	ISO	Component
GO:0003674	molecular_function	-	ND	Function
GO:0003697	single-stranded DNA binding	-	ISO	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003723	RNA binding	-	ISO	Function
GO:0005575	cellular_component	-	ND	Component
GO:0006406	mRNA export from nucleus	-	ISO	Process
GO:0008150	biological_process	-	ND	Process
GO:0016607	nuclear speck	-	IEA	Component
GO:0016607	nuclear speck	-	ISO	Component
GO:0031297	replication fork processing	-	ISO	Process
GO:0032786	positive regulation of DNA-templated transcription, elongation	-	ISO	Process
GO:0035145	exon-exon junction complex	-	ISO	Component
GO:0046784	viral mRNA export from host cell nucleus	-	ISO	Process
GO:0071013	catalytic step 2 spliceosome	-	ISO	Component