EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSRNOG00000036830 (Gene tree)
Gene ID: 500938
Gene Symbol: RGD1563200
Alias: LOC500938
Full Name: similar to CDNA sequence BC048502
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 6264 bases
Position: chr7:145056693-145062956
Accession: 1563200
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000052149	zf-U11-48K	PF05253.12	2.5e-18	1	2
ENSRNOP00000052149	zf-U11-48K	PF05253.12	2.5e-18	2	2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000055274	-	825	XM_008765777	ENSRNOP00000052149	154 (aa)	XP_008763999	G3V9L5

Gene Model

Click here to download ENSRNOG00000036830's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000036830's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000036830	RGD1563200	67	32.692	ENSRNOG00000036831	Gtsf1	55	32.692

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000036830	RGD1563200	99	75.163	ENSAMEG00000000958	-	100	75.163	Ailuropoda_melanoleuca
ENSRNOG00000036830	RGD1563200	100	71.613	ENSCAFG00000006463	-	100	71.613	Canis_familiaris
ENSRNOG00000036830	RGD1563200	99	71.242	ENSCAFG00020020371	-	97	71.242	Canis_lupus_dingo
ENSRNOG00000036830	RGD1563200	100	65.161	ENSCPOG00000023851	-	100	65.161	Cavia_porcellus
ENSRNOG00000036830	RGD1563200	92	66.901	ENSCLAG00000008579	-	97	66.901	Chinchilla_lanigera
ENSRNOG00000036830	RGD1563200	100	81.818	ENSCGRG00001016136	Gtsf2	100	81.818	Cricetulus_griseus_chok1gshd
ENSRNOG00000036830	RGD1563200	100	81.818	ENSCGRG00000012950	Gtsf2	100	81.818	Cricetulus_griseus_crigri
ENSRNOG00000036830	RGD1563200	100	74.026	ENSDORG00000026087	Gtsf2	100	74.026	Dipodomys_ordii
ENSRNOG00000036830	RGD1563200	68	66.981	ENSEASG00005010262	-	97	66.981	Equus_asinus_asinus
ENSRNOG00000036830	RGD1563200	68	71.429	ENSECAG00000014413	-	97	71.429	Equus_caballus
ENSRNOG00000036830	RGD1563200	70	74.074	ENSFCAG00000031316	-	92	74.074	Felis_catus
ENSRNOG00000036830	RGD1563200	100	66.234	ENSFDAG00000019555	-	100	66.234	Fukomys_damarensis
ENSRNOG00000036830	RGD1563200	92	70.629	ENSHGLG00000002798	-	95	70.068	Heterocephalus_glaber_female
ENSRNOG00000036830	RGD1563200	92	70.629	ENSHGLG00100012359	-	95	70.068	Heterocephalus_glaber_male
ENSRNOG00000036830	RGD1563200	97	67.333	ENSSTOG00000030158	-	100	67.333	Ictidomys_tridecemlineatus
ENSRNOG00000036830	RGD1563200	100	77.273	ENSJJAG00000016320	Gtsf2	100	77.273	Jaculus_jaculus
ENSRNOG00000036830	RGD1563200	99	83.553	ENSMAUG00000017189	-	94	83.553	Mesocricetus_auratus
ENSRNOG00000036830	RGD1563200	53	88.889	ENSMAUG00000014687	-	89	88.889	Mesocricetus_auratus
ENSRNOG00000036830	RGD1563200	100	85.714	ENSMOCG00000014770	Gtsf2	100	85.714	Microtus_ochrogaster
ENSRNOG00000036830	RGD1563200	100	92.857	MGP_CAROLIEiJ_G0020380	Gtsf2	100	92.857	Mus_caroli
ENSRNOG00000036830	RGD1563200	100	93.506	ENSMUSG00000053508	Gtsf2	100	93.506	Mus_musculus
ENSRNOG00000036830	RGD1563200	100	92.857	MGP_PahariEiJ_G0020379	Gtsf2	100	92.857	Mus_pahari
ENSRNOG00000036830	RGD1563200	100	93.506	MGP_SPRETEiJ_G0021273	Gtsf2	100	93.506	Mus_spretus
ENSRNOG00000036830	RGD1563200	100	75.484	ENSMPUG00000005664	-	100	75.484	Mustela_putorius_furo
ENSRNOG00000036830	RGD1563200	100	74.675	ENSNGAG00000008752	Gtsf2	100	74.675	Nannospalax_galili
ENSRNOG00000036830	RGD1563200	87	67.164	ENSODEG00000013228	-	98	64.626	Octodon_degus
ENSRNOG00000036830	RGD1563200	82	74.803	ENSPPRG00000004157	-	99	74.803	Panthera_pardus
ENSRNOG00000036830	RGD1563200	82	74.803	ENSPTIG00000020670	-	99	74.803	Panthera_tigris_altaica
ENSRNOG00000036830	RGD1563200	100	81.818	ENSPEMG00000014641	-	100	81.818	Peromyscus_maniculatus_bairdii
ENSRNOG00000036830	RGD1563200	100	88.961	ENSPEMG00000010828	-	100	88.961	Peromyscus_maniculatus_bairdii
ENSRNOG00000036830	RGD1563200	98	62.500	ENSSSCG00000000296	-	92	62.500	Sus_scrofa
ENSRNOG00000036830	RGD1563200	68	78.095	ENSUAMG00000021668	-	96	78.095	Ursus_americanus
ENSRNOG00000036830	RGD1563200	68	78.095	ENSUMAG00000011281	-	96	78.095	Ursus_maritimus
ENSRNOG00000036830	RGD1563200	68	75.238	ENSVVUG00000023684	-	96	75.238	Vulpes_vulpes