EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000036880 (Gene tree)
Gene ID: 497990
Gene Symbol: Arl5c
Alias: LOC497990|RGD1563128
Full Name: ADP-ribosylation factor like GTPase 5C
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 6905 bases
Position: chr10:85941176-85948080
Accession: 1563128
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000029510	MMR_HSR1	PF01926.23	7.6e-07	1	1
ENSRNOP00000069262	MMR_HSR1	PF01926.23	7.6e-07	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000082427	-	1448	XM_006247396	ENSRNOP00000069262	179 (aa)	XP_006247458	D3ZES1
ENSRNOT00000037318	-	1067	XM_006247397	ENSRNOP00000029510	179 (aa)	XP_006247459	D3ZES1

Gene Model

Click here to download ENSRNOG00000036880's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000036880's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000036880	Arl5c	98	43.750	ENSRNOG00000054775	Arf3	97	43.750
ENSRNOG00000036880	Arl5c	89	45.283	ENSRNOG00000005763	Arl1	90	45.679
ENSRNOG00000036880	Arl5c	87	36.025	ENSRNOG00000020770	Arl4d	80	36.025
ENSRNOG00000036880	Arl5c	96	37.705	ENSRNOG00000013992	Arfrp1	91	37.705
ENSRNOG00000036880	Arl5c	88	41.772	ENSRNOG00000021010	Arl2	90	41.772
ENSRNOG00000036880	Arl5c	95	38.150	ENSRNOG00000049827	Arl14	89	38.150
ENSRNOG00000036880	Arl5c	98	44.318	ENSRNOG00000004807	Arf2	97	44.318
ENSRNOG00000036880	Arl5c	89	40.000	ENSRNOG00000004282	Arl4a	83	40.000
ENSRNOG00000036880	Arl5c	74	32.331	ENSRNOG00000045948	Arl10	68	32.331
ENSRNOG00000036880	Arl5c	94	40.476	ENSRNOG00000019973	Arl3	90	40.476
ENSRNOG00000036880	Arl5c	69	30.469	ENSRNOG00000019295	Rab12	51	30.469
ENSRNOG00000036880	Arl5c	98	38.122	ENSRNOG00000001689	Arl6	97	38.122
ENSRNOG00000036880	Arl5c	98	44.886	ENSRNOG00000060229	Arf1	97	44.886
ENSRNOG00000036880	Arl5c	98	43.750	ENSRNOG00000057515	AABR07046136.1	97	43.750
ENSRNOG00000036880	Arl5c	96	42.775	ENSRNOG00000007806	Arf5	96	42.775
ENSRNOG00000036880	Arl5c	98	73.143	ENSRNOG00000018714	Arl5b	97	73.684
ENSRNOG00000036880	Arl5c	98	72.571	ENSRNOG00000006839	Arl5a	98	72.571
ENSRNOG00000036880	Arl5c	88	40.000	ENSRNOG00000014653	Arl11	92	40.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000036880	Arl5c	100	82.682	ENSAMEG00000004195	ARL5C	99	82.682	Ailuropoda_melanoleuca
ENSRNOG00000036880	Arl5c	99	78.090	ENSACAG00000003879	-	99	78.090	Anolis_carolinensis
ENSRNOG00000036880	Arl5c	100	86.592	ENSCAFG00000016525	ARL5C	100	86.592	Canis_familiaris
ENSRNOG00000036880	Arl5c	99	86.441	ENSCHIG00000008208	ARL5C	99	86.441	Capra_hircus
ENSRNOG00000036880	Arl5c	59	82.075	ENSCHOG00000013232	-	100	82.075	Choloepus_hoffmanni
ENSRNOG00000036880	Arl5c	99	84.746	ENSCGRG00001000695	Arl5c	99	84.746	Cricetulus_griseus_chok1gshd
ENSRNOG00000036880	Arl5c	99	85.311	ENSCGRG00000007376	Arl5c	99	85.311	Cricetulus_griseus_crigri
ENSRNOG00000036880	Arl5c	100	84.358	ENSDNOG00000019741	ARL5C	100	84.358	Dasypus_novemcinctus
ENSRNOG00000036880	Arl5c	99	85.311	ENSDORG00000016304	Arl5c	99	85.311	Dipodomys_ordii
ENSRNOG00000036880	Arl5c	93	84.337	ENSEASG00005001922	ARL5C	77	84.337	Equus_asinus_asinus
ENSRNOG00000036880	Arl5c	100	86.034	ENSECAG00000009024	ARL5C	100	86.034	Equus_caballus
ENSRNOG00000036880	Arl5c	100	85.475	ENSFCAG00000009962	ARL5C	100	85.475	Felis_catus
ENSRNOG00000036880	Arl5c	99	89.831	ENSSTOG00000011104	ARL5C	99	89.831	Ictidomys_tridecemlineatus
ENSRNOG00000036880	Arl5c	100	76.536	ENSLACG00000015332	ARL5C	100	76.536	Latimeria_chalumnae
ENSRNOG00000036880	Arl5c	100	87.151	ENSLAFG00000018248	ARL5C	99	87.151	Loxodonta_africana
ENSRNOG00000036880	Arl5c	99	82.486	ENSMAUG00000012845	Arl5c	87	82.486	Mesocricetus_auratus
ENSRNOG00000036880	Arl5c	100	86.034	ENSMICG00000002661	ARL5C	100	86.034	Microcebus_murinus
ENSRNOG00000036880	Arl5c	100	82.682	ENSMOCG00000000234	Arl5c	100	82.682	Microtus_ochrogaster
ENSRNOG00000036880	Arl5c	100	93.855	MGP_CAROLIEiJ_G0017071	Arl5c	100	93.855	Mus_caroli
ENSRNOG00000036880	Arl5c	100	93.296	ENSMUSG00000038352	Arl5c	100	93.296	Mus_musculus
ENSRNOG00000036880	Arl5c	100	94.413	MGP_PahariEiJ_G0018200	Arl5c	100	94.413	Mus_pahari
ENSRNOG00000036880	Arl5c	100	93.855	MGP_SPRETEiJ_G0017917	Arl5c	100	93.855	Mus_spretus
ENSRNOG00000036880	Arl5c	100	85.475	ENSMLUG00000030149	ARL5C	99	85.475	Myotis_lucifugus
ENSRNOG00000036880	Arl5c	100	82.123	ENSOGAG00000005894	ARL5C	100	82.123	Otolemur_garnettii
ENSRNOG00000036880	Arl5c	100	86.034	ENSOARG00000010377	ARL5C	99	86.034	Ovis_aries
ENSRNOG00000036880	Arl5c	100	85.475	ENSPPRG00000000975	ARL5C	100	85.475	Panthera_pardus
ENSRNOG00000036880	Arl5c	100	84.916	ENSPTIG00000017487	ARL5C	100	84.916	Panthera_tigris_altaica
ENSRNOG00000036880	Arl5c	100	92.179	ENSPEMG00000008932	Arl5c	100	92.179	Peromyscus_maniculatus_bairdii
ENSRNOG00000036880	Arl5c	100	87.151	ENSPCOG00000028489	ARL5C	100	87.151	Propithecus_coquereli
ENSRNOG00000036880	Arl5c	94	85.714	ENSPVAG00000008495	ARL5C	99	85.714	Pteropus_vampyrus
ENSRNOG00000036880	Arl5c	96	76.163	ENSSBOG00000021022	ARL5C	98	76.163	Saimiri_boliviensis_boliviensis
ENSRNOG00000036880	Arl5c	96	76.608	ENSSPUG00000007555	ARL5C	100	78.528	Sphenodon_punctatus
ENSRNOG00000036880	Arl5c	100	84.358	ENSTBEG00000007274	ARL5C	100	84.358	Tupaia_belangeri
ENSRNOG00000036880	Arl5c	100	84.916	ENSUAMG00000012299	ARL5C	100	84.916	Ursus_americanus
ENSRNOG00000036880	Arl5c	100	85.475	ENSUMAG00000017197	ARL5C	100	85.475	Ursus_maritimus
ENSRNOG00000036880	Arl5c	100	74.302	ENSXETG00000023713	arl5c	92	74.302	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005525	GTP binding	21873635.	IBA	Function
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005802	trans-Golgi network	21873635.	IBA	Component
GO:0006886	intracellular protein transport	21873635.	IBA	Process
GO:0016192	vesicle-mediated transport	21873635.	IBA	Process
GO:1903292	protein localization to Golgi membrane	21873635.	IBA	Process