EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000037162 (Gene tree)
Gene ID: 681062
Gene Symbol: Slbp
Alias: LOC681062|MGC187387
Full Name: stem-loop binding protein
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 9453 bases
Position: chr14:82356916-82366368
Accession: 1584682
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000047799	SLBP_RNA_bind	PF15247.6	4.4e-29	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000040229	-	1656	-	ENSRNOP00000047799	275 (aa)	-	B3DM97

Gene Model

Click here to download ENSRNOG00000037162's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000037162's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000037162	Slbp	100	86.909	ENSG00000163950	SLBP	100	86.182	Homo_sapiens
ENSRNOG00000037162	Slbp	84	50.769	ENSAPOG00000004953	slbp	90	50.973	Acanthochromis_polyacanthus
ENSRNOG00000037162	Slbp	79	94.009	ENSAMEG00000016915	SLBP	100	94.009	Ailuropoda_melanoleuca
ENSRNOG00000037162	Slbp	83	52.610	ENSACIG00000022308	slbp	94	51.020	Amphilophus_citrinellus
ENSRNOG00000037162	Slbp	90	48.689	ENSAOCG00000024545	slbp	87	49.049	Amphiprion_ocellaris
ENSRNOG00000037162	Slbp	85	49.618	ENSAPEG00000017629	slbp	87	49.049	Amphiprion_percula
ENSRNOG00000037162	Slbp	84	50.958	ENSATEG00000016358	slbp	74	57.820	Anabas_testudineus
ENSRNOG00000037162	Slbp	79	75.000	ENSAPLG00000015989	-	100	79.091	Anas_platyrhynchos
ENSRNOG00000037162	Slbp	100	83.688	ENSANAG00000034769	SLBP	100	82.979	Aotus_nancymaae
ENSRNOG00000037162	Slbp	82	51.600	ENSACLG00000007036	-	78	51.613	Astatotilapia_calliptera
ENSRNOG00000037162	Slbp	83	57.317	ENSAMXG00000014527	slbp	77	63.507	Astyanax_mexicanus
ENSRNOG00000037162	Slbp	100	86.182	ENSBTAG00000001328	SLBP	100	86.182	Bos_taurus
ENSRNOG00000037162	Slbp	100	82.624	ENSCJAG00000001790	SLBP	100	82.624	Callithrix_jacchus
ENSRNOG00000037162	Slbp	100	87.636	ENSCAFG00000015016	SLBP	100	87.636	Canis_familiaris
ENSRNOG00000037162	Slbp	100	87.636	ENSCAFG00020012334	SLBP	100	87.636	Canis_lupus_dingo
ENSRNOG00000037162	Slbp	100	85.091	ENSCHIG00000019364	SLBP	100	85.091	Capra_hircus
ENSRNOG00000037162	Slbp	100	87.636	ENSTSYG00000000376	SLBP	100	86.545	Carlito_syrichta
ENSRNOG00000037162	Slbp	66	90.608	ENSCAPG00000016340	SLBP	100	90.608	Cavia_aperea
ENSRNOG00000037162	Slbp	100	86.380	ENSCPOG00000000031	SLBP	100	86.380	Cavia_porcellus
ENSRNOG00000037162	Slbp	62	84.762	ENSCCAG00000026134	SLBP	85	82.857	Cebus_capucinus
ENSRNOG00000037162	Slbp	100	87.636	ENSCATG00000029173	SLBP	100	86.909	Cercocebus_atys
ENSRNOG00000037162	Slbp	100	86.545	ENSCLAG00000008157	SLBP	100	86.545	Chinchilla_lanigera
ENSRNOG00000037162	Slbp	100	73.214	ENSCSAG00000015628	SLBP	100	73.214	Chlorocebus_sabaeus
ENSRNOG00000037162	Slbp	100	69.858	ENSCPBG00000000746	SLBP	100	71.986	Chrysemys_picta_bellii
ENSRNOG00000037162	Slbp	79	90.278	ENSCANG00000041008	SLBP	100	89.352	Colobus_angolensis_palliatus
ENSRNOG00000037162	Slbp	100	95.273	ENSCGRG00001009760	-	100	95.273	Cricetulus_griseus_chok1gshd
ENSRNOG00000037162	Slbp	100	92.000	ENSCGRG00001012991	-	100	92.000	Cricetulus_griseus_chok1gshd
ENSRNOG00000037162	Slbp	100	95.273	ENSCGRG00000004506	Slbp	100	95.273	Cricetulus_griseus_crigri
ENSRNOG00000037162	Slbp	86	51.351	ENSCSEG00000020337	-	78	56.364	Cynoglossus_semilaevis
ENSRNOG00000037162	Slbp	88	48.679	ENSCVAG00000019592	-	81	54.545	Cyprinodon_variegatus
ENSRNOG00000037162	Slbp	86	56.522	ENSDARG00000100558	slbp	68	62.857	Danio_rerio
ENSRNOG00000037162	Slbp	100	78.445	ENSDNOG00000047539	SLBP	100	78.445	Dasypus_novemcinctus
ENSRNOG00000037162	Slbp	79	92.130	ENSDORG00000003028	Slbp	100	92.130	Dipodomys_ordii
ENSRNOG00000037162	Slbp	86	79.498	ENSETEG00000004641	SLBP	99	79.498	Echinops_telfairi
ENSRNOG00000037162	Slbp	70	93.229	ENSEASG00005022714	SLBP	100	93.229	Equus_asinus_asinus
ENSRNOG00000037162	Slbp	85	81.545	ENSECAG00000011689	SLBP	69	88.571	Equus_caballus
ENSRNOG00000037162	Slbp	85	51.172	ENSELUG00000012854	slbp	91	49.412	Esox_lucius
ENSRNOG00000037162	Slbp	100	89.091	ENSFCAG00000000169	SLBP	100	89.091	Felis_catus
ENSRNOG00000037162	Slbp	100	69.395	ENSFALG00000010003	-	100	69.039	Ficedula_albicollis
ENSRNOG00000037162	Slbp	92	90.119	ENSFDAG00000007592	SLBP	99	90.119	Fukomys_damarensis
ENSRNOG00000037162	Slbp	90	48.148	ENSFHEG00000007497	slbp	84	48.918	Fundulus_heteroclitus
ENSRNOG00000037162	Slbp	53	71.333	ENSGMOG00000015352	slbp	96	71.333	Gadus_morhua
ENSRNOG00000037162	Slbp	61	49.112	ENSGALG00000034065	-	51	43.779	Gallus_gallus
ENSRNOG00000037162	Slbp	100	68.683	ENSGALG00000015712	SLBP	100	70.819	Gallus_gallus
ENSRNOG00000037162	Slbp	82	52.610	ENSGAFG00000019577	slbp	80	55.924	Gambusia_affinis
ENSRNOG00000037162	Slbp	86	50.201	ENSGACG00000019596	slbp	82	56.158	Gasterosteus_aculeatus
ENSRNOG00000037162	Slbp	86	68.033	ENSGAGG00000012096	SLBP	91	71.806	Gopherus_agassizii
ENSRNOG00000037162	Slbp	100	86.909	ENSGGOG00000003167	SLBP	100	86.182	Gorilla_gorilla
ENSRNOG00000037162	Slbp	82	51.383	ENSHBUG00000003338	-	78	51.613	Haplochromis_burtoni
ENSRNOG00000037162	Slbp	100	76.364	ENSHGLG00000005955	-	100	76.364	Heterocephalus_glaber_female
ENSRNOG00000037162	Slbp	90	78.629	ENSHGLG00000008313	-	100	74.182	Heterocephalus_glaber_female
ENSRNOG00000037162	Slbp	85	80.342	ENSHGLG00000010461	-	96	80.567	Heterocephalus_glaber_female
ENSRNOG00000037162	Slbp	100	88.000	ENSHGLG00100014018	-	100	88.000	Heterocephalus_glaber_male
ENSRNOG00000037162	Slbp	85	80.342	ENSHGLG00100014906	-	96	80.567	Heterocephalus_glaber_male
ENSRNOG00000037162	Slbp	90	79.435	ENSHGLG00100010510	-	100	74.909	Heterocephalus_glaber_male
ENSRNOG00000037162	Slbp	84	50.598	ENSHCOG00000013425	slbp	90	50.403	Hippocampus_comes
ENSRNOG00000037162	Slbp	70	67.172	ENSIPUG00000016780	slbp	74	67.172	Ictalurus_punctatus
ENSRNOG00000037162	Slbp	100	91.636	ENSSTOG00000003262	SLBP	100	91.636	Ictidomys_tridecemlineatus
ENSRNOG00000037162	Slbp	100	91.273	ENSJJAG00000002394	-	100	91.273	Jaculus_jaculus
ENSRNOG00000037162	Slbp	100	92.364	ENSJJAG00000020549	-	100	92.364	Jaculus_jaculus
ENSRNOG00000037162	Slbp	82	50.988	ENSKMAG00000008187	slbp	77	53.670	Kryptolebias_marmoratus
ENSRNOG00000037162	Slbp	84	51.953	ENSLBEG00000024709	slbp	76	53.333	Labrus_bergylta
ENSRNOG00000037162	Slbp	93	56.667	ENSLACG00000014623	SLBP	96	55.926	Latimeria_chalumnae
ENSRNOG00000037162	Slbp	92	52.158	ENSLOCG00000011027	slbp	93	52.158	Lepisosteus_oculatus
ENSRNOG00000037162	Slbp	85	84.979	ENSLAFG00000012933	SLBP	100	83.951	Loxodonta_africana
ENSRNOG00000037162	Slbp	91	88.048	ENSMFAG00000030130	SLBP	95	74.319	Macaca_fascicularis
ENSRNOG00000037162	Slbp	93	85.496	ENSMMUG00000032303	SLBP	96	89.862	Macaca_mulatta
ENSRNOG00000037162	Slbp	100	68.440	ENSMNEG00000008082	SLBP	100	67.730	Macaca_nemestrina
ENSRNOG00000037162	Slbp	93	80.000	ENSMLEG00000024639	SLBP	98	79.216	Mandrillus_leucophaeus
ENSRNOG00000037162	Slbp	85	47.490	ENSMAMG00000001046	-	90	47.656	Mastacembelus_armatus
ENSRNOG00000037162	Slbp	82	51.383	ENSMZEG00005017261	-	78	51.613	Maylandia_zebra
ENSRNOG00000037162	Slbp	79	77.880	ENSMGAG00000013085	SLBP	100	77.880	Meleagris_gallopavo
ENSRNOG00000037162	Slbp	100	95.273	ENSMAUG00000009490	Slbp	100	95.273	Mesocricetus_auratus
ENSRNOG00000037162	Slbp	100	86.545	ENSMICG00000014244	SLBP	100	85.455	Microcebus_murinus
ENSRNOG00000037162	Slbp	100	95.636	ENSMOCG00000015826	Slbp	99	95.636	Microtus_ochrogaster
ENSRNOG00000037162	Slbp	84	50.847	ENSMMOG00000010181	slbp	93	50.424	Mola_mola
ENSRNOG00000037162	Slbp	93	80.843	ENSMODG00000004304	SLBP	100	80.843	Monodelphis_domestica
ENSRNOG00000037162	Slbp	84	48.462	ENSMALG00000013883	-	54	55.981	Monopterus_albus
ENSRNOG00000037162	Slbp	100	98.545	MGP_CAROLIEiJ_G0027117	Slbp	100	98.545	Mus_caroli
ENSRNOG00000037162	Slbp	100	98.909	ENSMUSG00000004642	Slbp	100	98.909	Mus_musculus
ENSRNOG00000037162	Slbp	100	98.909	MGP_PahariEiJ_G0016901	Slbp	100	98.909	Mus_pahari
ENSRNOG00000037162	Slbp	100	98.909	MGP_SPRETEiJ_G0028113	Slbp	100	98.909	Mus_spretus
ENSRNOG00000037162	Slbp	67	91.848	ENSMPUG00000011139	SLBP	94	91.848	Mustela_putorius_furo
ENSRNOG00000037162	Slbp	79	88.532	ENSMLUG00000004425	SLBP	93	88.532	Myotis_lucifugus
ENSRNOG00000037162	Slbp	100	89.818	ENSNGAG00000020799	Slbp	100	89.818	Nannospalax_galili
ENSRNOG00000037162	Slbp	80	51.240	ENSNBRG00000006044	-	87	52.174	Neolamprologus_brichardi
ENSRNOG00000037162	Slbp	100	84.752	ENSNLEG00000000048	SLBP	100	84.043	Nomascus_leucogenys
ENSRNOG00000037162	Slbp	65	87.079	ENSMEUG00000002501	SLBP	100	87.079	Notamacropus_eugenii
ENSRNOG00000037162	Slbp	100	85.818	ENSODEG00000012641	SLBP	100	85.818	Octodon_degus
ENSRNOG00000037162	Slbp	82	51.779	ENSONIG00000017469	-	78	51.152	Oreochromis_niloticus
ENSRNOG00000037162	Slbp	79	84.793	ENSOANG00000014243	SLBP	95	84.793	Ornithorhynchus_anatinus
ENSRNOG00000037162	Slbp	83	51.653	ENSORLG00000024887	-	88	48.739	Oryzias_latipes
ENSRNOG00000037162	Slbp	83	51.240	ENSORLG00020007798	slbp	89	48.319	Oryzias_latipes_hni
ENSRNOG00000037162	Slbp	83	51.240	ENSORLG00015016656	slbp	88	48.319	Oryzias_latipes_hsok
ENSRNOG00000037162	Slbp	83	51.452	ENSOMEG00000010818	slbp	90	48.980	Oryzias_melastigma
ENSRNOG00000037162	Slbp	100	86.182	ENSOGAG00000009750	SLBP	100	85.455	Otolemur_garnettii
ENSRNOG00000037162	Slbp	79	91.244	ENSOARG00000016090	SLBP	100	91.244	Ovis_aries
ENSRNOG00000037162	Slbp	100	86.545	ENSPPAG00000033300	SLBP	100	85.818	Pan_paniscus
ENSRNOG00000037162	Slbp	91	90.000	ENSPPRG00000016897	SLBP	100	90.000	Panthera_pardus
ENSRNOG00000037162	Slbp	70	93.750	ENSPTIG00000015057	SLBP	100	93.750	Panthera_tigris_altaica
ENSRNOG00000037162	Slbp	100	86.182	ENSPTRG00000015832	SLBP	100	85.455	Pan_troglodytes
ENSRNOG00000037162	Slbp	100	83.803	ENSPANG00000004932	SLBP	100	83.099	Papio_anubis
ENSRNOG00000037162	Slbp	88	54.023	ENSPKIG00000006183	slbp	94	52.381	Paramormyrops_kingsleyae
ENSRNOG00000037162	Slbp	80	51.101	ENSPMGG00000017684	-	88	59.322	Periophthalmus_magnuspinnatus
ENSRNOG00000037162	Slbp	100	95.636	ENSPEMG00000018369	Slbp	100	95.636	Peromyscus_maniculatus_bairdii
ENSRNOG00000037162	Slbp	100	74.915	ENSPCIG00000013575	SLBP	86	74.747	Phascolarctos_cinereus
ENSRNOG00000037162	Slbp	82	52.016	ENSPFOG00000000462	slbp	76	55.924	Poecilia_formosa
ENSRNOG00000037162	Slbp	82	52.419	ENSPLAG00000008300	slbp	81	54.206	Poecilia_latipinna
ENSRNOG00000037162	Slbp	82	52.016	ENSPMEG00000020807	slbp	76	55.924	Poecilia_mexicana
ENSRNOG00000037162	Slbp	82	52.016	ENSPREG00000004561	slbp	76	55.924	Poecilia_reticulata
ENSRNOG00000037162	Slbp	100	87.273	ENSPPYG00000014529	SLBP	100	86.545	Pongo_abelii
ENSRNOG00000037162	Slbp	100	88.000	ENSPCOG00000017399	SLBP	100	86.909	Propithecus_coquereli
ENSRNOG00000037162	Slbp	100	81.818	ENSPVAG00000002807	SLBP	100	81.818	Pteropus_vampyrus
ENSRNOG00000037162	Slbp	82	51.383	ENSPNYG00000005451	-	78	51.613	Pundamilia_nyererei
ENSRNOG00000037162	Slbp	82	57.917	ENSPNAG00000018503	slbp	89	57.917	Pygocentrus_nattereri
ENSRNOG00000037162	Slbp	100	87.636	ENSRBIG00000039159	SLBP	100	86.909	Rhinopithecus_bieti
ENSRNOG00000037162	Slbp	95	86.973	ENSRROG00000030081	SLBP	98	84.962	Rhinopithecus_roxellana
ENSRNOG00000037162	Slbp	70	88.542	ENSSBOG00000033897	SLBP	100	87.500	Saimiri_boliviensis_boliviensis
ENSRNOG00000037162	Slbp	100	74.582	ENSSHAG00000013939	SLBP	100	74.582	Sarcophilus_harrisii
ENSRNOG00000037162	Slbp	91	54.909	ENSSFOG00015019429	slbp	98	51.825	Scleropages_formosus
ENSRNOG00000037162	Slbp	77	50.000	ENSSMAG00000016028	-	82	50.213	Scophthalmus_maximus
ENSRNOG00000037162	Slbp	72	55.556	ENSSDUG00000000855	-	77	55.869	Seriola_dumerili
ENSRNOG00000037162	Slbp	72	39.623	ENSSLDG00000007554	-	66	38.208	Seriola_lalandi_dorsalis
ENSRNOG00000037162	Slbp	50	54.000	ENSSLDG00000022893	-	86	54.795	Seriola_lalandi_dorsalis
ENSRNOG00000037162	Slbp	96	68.939	ENSSPUG00000016007	SLBP	98	69.615	Sphenodon_punctatus
ENSRNOG00000037162	Slbp	82	52.174	ENSSPAG00000004021	slbp	80	57.895	Stegastes_partitus
ENSRNOG00000037162	Slbp	100	84.727	ENSSSCG00000008676	SLBP	100	84.727	Sus_scrofa
ENSRNOG00000037162	Slbp	93	69.732	ENSTGUG00000010626	-	100	71.648	Taeniopygia_guttata
ENSRNOG00000037162	Slbp	85	51.373	ENSTRUG00000000688	slbp	91	49.402	Takifugu_rubripes
ENSRNOG00000037162	Slbp	88	46.512	ENSTNIG00000000484	-	80	50.246	Tetraodon_nigroviridis
ENSRNOG00000037162	Slbp	92	68.898	ENSTBEG00000004085	SLBP	100	68.898	Tupaia_belangeri
ENSRNOG00000037162	Slbp	65	87.079	ENSTTRG00000004010	-	100	87.079	Tursiops_truncatus
ENSRNOG00000037162	Slbp	79	92.593	ENSTTRG00000010901	-	100	92.593	Tursiops_truncatus
ENSRNOG00000037162	Slbp	100	88.087	ENSUAMG00000012990	SLBP	100	88.087	Ursus_americanus
ENSRNOG00000037162	Slbp	70	92.708	ENSUMAG00000006119	SLBP	100	92.708	Ursus_maritimus
ENSRNOG00000037162	Slbp	100	86.909	ENSVVUG00000015578	-	100	86.909	Vulpes_vulpes
ENSRNOG00000037162	Slbp	91	57.588	ENSXETG00000003876	slbp	93	58.893	Xenopus_tropicalis
ENSRNOG00000037162	Slbp	72	55.556	ENSXCOG00000008275	slbp	81	55.869	Xiphophorus_couchianus
ENSRNOG00000037162	Slbp	82	52.016	ENSXMAG00000001331	-	75	55.924	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	-	ISO	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006398	mRNA 3'-end processing by stem-loop binding and cleavage	21873635.	IBA	Process
GO:0006398	mRNA 3'-end processing by stem-loop binding and cleavage	-	ISO	Process
GO:0033260	nuclear DNA replication	-	IEA	Process
GO:0033260	nuclear DNA replication	-	ISO	Process
GO:0044770	cell cycle phase transition	-	IEA	Process
GO:0044770	cell cycle phase transition	-	ISO	Process
GO:0051028	mRNA transport	21873635.	IBA	Process
GO:0051028	mRNA transport	-	ISO	Process
GO:0071204	histone pre-mRNA 3'end processing complex	21873635.	IBA	Component
GO:0071204	histone pre-mRNA 3'end processing complex	-	ISO	Component
GO:0071207	histone pre-mRNA stem-loop binding	21873635.	IBA	Function
GO:0071207	histone pre-mRNA stem-loop binding	-	ISO	Function
GO:1990904	ribonucleoprotein complex	-	ISO	Component