EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSRNOG00000037352 (Gene tree)
Gene ID: 292328
Gene Symbol: RGD1562747
Alias: LOC292328
Full Name: similar to RIKEN cDNA 1110012L19
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 5718 bases
Position: chr8:69484174-69489891
Accession: 1562747
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000071593	ASCH	PF04266.14	0.0002	1	1
ENSRNOP00000053358	ASCH	PF04266.14	0.00033	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000077290	-	2684	XM_006243225	ENSRNOP00000071593	128 (aa)	XP_006243287	A0A0G2K0V2
ENSRNOT00000056518	-	1038	-	ENSRNOP00000053358	176 (aa)	-	D3ZPT1

Gene Model

Click here to download ENSRNOG00000037352's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000037352's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000037352	RGD1562747	96	56.098	ENSACIG00000009642	CXorf40A	99	53.595	Amphilophus_citrinellus
ENSRNOG00000037352	RGD1562747	99	77.953	ENSCATG00000015529	-	99	79.861	Cercocebus_atys
ENSRNOG00000037352	RGD1562747	99	76.378	ENSCSAG00000007176	-	97	79.739	Chlorocebus_sabaeus
ENSRNOG00000037352	RGD1562747	96	59.350	ENSCSEG00000021054	CXorf40A	96	56.376	Cynoglossus_semilaevis
ENSRNOG00000037352	RGD1562747	99	77.165	ENSMNEG00000030991	-	99	79.167	Macaca_nemestrina
ENSRNOG00000037352	RGD1562747	99	77.165	ENSMLEG00000030397	-	99	79.167	Mandrillus_leucophaeus
ENSRNOG00000037352	RGD1562747	99	88.189	ENSMAUG00000007164	1110012L19Rik	96	90.260	Mesocricetus_auratus
ENSRNOG00000037352	RGD1562747	99	87.402	ENSMOCG00000020335	1110012L19Rik	98	87.349	Microtus_ochrogaster
ENSRNOG00000037352	RGD1562747	99	70.079	ENSMODG00000005620	-	95	70.513	Monodelphis_domestica
ENSRNOG00000037352	RGD1562747	99	86.614	MGP_CAROLIEiJ_G0033126	1110012L19Rik	100	88.535	Mus_caroli
ENSRNOG00000037352	RGD1562747	99	85.827	ENSMUSG00000045237	1110012L19Rik	100	88.535	Mus_musculus
ENSRNOG00000037352	RGD1562747	99	69.291	ENSOANG00000001090	-	100	73.077	Ornithorhynchus_anatinus
ENSRNOG00000037352	RGD1562747	99	88.976	ENSPEMG00000019988	1110012L19Rik	99	85.276	Peromyscus_maniculatus_bairdii
ENSRNOG00000037352	RGD1562747	99	77.165	ENSRBIG00000041107	-	97	80.392	Rhinopithecus_bieti
ENSRNOG00000037352	RGD1562747	99	77.165	ENSRBIG00000022199	-	97	80.392	Rhinopithecus_bieti
ENSRNOG00000037352	RGD1562747	99	77.165	ENSRROG00000031783	-	99	79.167	Rhinopithecus_roxellana
ENSRNOG00000037352	RGD1562747	99	74.016	ENSSHAG00000014594	-	90	73.718	Sarcophilus_harrisii