EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000037500 (Gene tree)
Gene ID: 304567
Gene Symbol: Pus1
Alias: LOC304567|MGC112655
Full Name: pseudouridine synthase 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 8754 bases
Position: chr12:51937175-51945928
Accession: 1311871
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000053623	PseudoU_synth_1	PF01416.20	9.3e-15	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000056780	-	1784	XM_006249547	ENSRNOP00000053623	423 (aa)	XP_006249609	Q4KM92

Gene Model

Click here to download ENSRNOG00000037500's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000037500's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000037500	Pus1	98	84.798	ENSG00000177192	PUS1	100	86.216	Homo_sapiens
ENSRNOG00000037500	Pus1	86	67.760	ENSAPOG00000007254	pus1	87	67.760	Acanthochromis_polyacanthus
ENSRNOG00000037500	Pus1	99	79.335	ENSAMEG00000013715	PUS1	100	79.335	Ailuropoda_melanoleuca
ENSRNOG00000037500	Pus1	83	68.156	ENSACIG00000009169	pus1	87	68.156	Amphilophus_citrinellus
ENSRNOG00000037500	Pus1	86	69.399	ENSAOCG00000022207	pus1	87	69.399	Amphiprion_ocellaris
ENSRNOG00000037500	Pus1	86	69.126	ENSAPEG00000006039	pus1	93	69.126	Amphiprion_percula
ENSRNOG00000037500	Pus1	83	68.661	ENSATEG00000020688	pus1	90	68.661	Anabas_testudineus
ENSRNOG00000037500	Pus1	81	78.324	ENSACAG00000007367	PUS1	93	78.324	Anolis_carolinensis
ENSRNOG00000037500	Pus1	77	90.798	ENSANAG00000036192	PUS1	100	90.798	Aotus_nancymaae
ENSRNOG00000037500	Pus1	86	68.306	ENSACLG00000020868	pus1	94	68.306	Astatotilapia_calliptera
ENSRNOG00000037500	Pus1	82	71.470	ENSAMXG00000008710	pus1	81	71.470	Astyanax_mexicanus
ENSRNOG00000037500	Pus1	97	81.010	ENSBTAG00000012990	PUS1	100	82.250	Bos_taurus
ENSRNOG00000037500	Pus1	79	38.040	WBGene00004248	pus-1	82	38.040	Caenorhabditis_elegans
ENSRNOG00000037500	Pus1	60	92.520	ENSCJAG00000003720	PUS1	73	91.011	Callithrix_jacchus
ENSRNOG00000037500	Pus1	99	77.241	ENSCAFG00000006429	PUS1	100	80.402	Canis_familiaris
ENSRNOG00000037500	Pus1	99	77.262	ENSCAFG00020010737	PUS1	100	77.262	Canis_lupus_dingo
ENSRNOG00000037500	Pus1	98	81.205	ENSCHIG00000000487	PUS1	100	82.250	Capra_hircus
ENSRNOG00000037500	Pus1	87	87.534	ENSTSYG00000032605	PUS1	100	87.534	Carlito_syrichta
ENSRNOG00000037500	Pus1	70	91.946	ENSCAPG00000006421	PUS1	100	88.580	Cavia_aperea
ENSRNOG00000037500	Pus1	99	82.118	ENSCPOG00000001027	PUS1	100	83.059	Cavia_porcellus
ENSRNOG00000037500	Pus1	100	81.628	ENSCCAG00000015879	PUS1	100	81.628	Cebus_capucinus
ENSRNOG00000037500	Pus1	98	84.798	ENSCATG00000032870	PUS1	99	84.798	Cercocebus_atys
ENSRNOG00000037500	Pus1	99	83.765	ENSCLAG00000011689	PUS1	100	84.000	Chinchilla_lanigera
ENSRNOG00000037500	Pus1	98	85.036	ENSCSAG00000001879	PUS1	99	85.036	Chlorocebus_sabaeus
ENSRNOG00000037500	Pus1	73	80.000	ENSCPBG00000024715	PUS1	93	77.108	Chrysemys_picta_bellii
ENSRNOG00000037500	Pus1	84	43.575	ENSCING00000009426	-	95	43.575	Ciona_intestinalis
ENSRNOG00000037500	Pus1	76	43.478	ENSCSAVG00000003751	-	66	43.478	Ciona_savignyi
ENSRNOG00000037500	Pus1	93	77.805	ENSCANG00000035561	PUS1	99	77.805	Colobus_angolensis_palliatus
ENSRNOG00000037500	Pus1	100	95.508	ENSCGRG00001019592	Pus1	100	95.508	Cricetulus_griseus_chok1gshd
ENSRNOG00000037500	Pus1	100	95.508	ENSCGRG00000004048	Pus1	100	95.508	Cricetulus_griseus_crigri
ENSRNOG00000037500	Pus1	92	64.615	ENSCSEG00000003629	pus1	92	64.615	Cynoglossus_semilaevis
ENSRNOG00000037500	Pus1	86	67.575	ENSCVAG00000001265	pus1	89	67.575	Cyprinodon_variegatus
ENSRNOG00000037500	Pus1	82	67.529	ENSDARG00000045562	pus1	99	67.266	Danio_rerio
ENSRNOG00000037500	Pus1	63	30.195	ENSDARG00000028976	pus3	60	30.195	Danio_rerio
ENSRNOG00000037500	Pus1	96	73.913	ENSDNOG00000045576	PUS1	98	81.677	Dasypus_novemcinctus
ENSRNOG00000037500	Pus1	77	93.558	ENSDORG00000011455	Pus1	100	93.558	Dipodomys_ordii
ENSRNOG00000037500	Pus1	83	45.634	FBgn0038811	PUS1	84	45.634	Drosophila_melanogaster
ENSRNOG00000037500	Pus1	93	75.124	ENSETEG00000019160	PUS1	100	73.494	Echinops_telfairi
ENSRNOG00000037500	Pus1	76	43.440	ENSEBUG00000000368	-	63	43.440	Eptatretus_burgeri
ENSRNOG00000037500	Pus1	100	81.651	ENSEASG00005016535	PUS1	100	81.651	Equus_asinus_asinus
ENSRNOG00000037500	Pus1	93	84.328	ENSECAG00000006965	PUS1	100	84.328	Equus_caballus
ENSRNOG00000037500	Pus1	82	70.115	ENSELUG00000010424	pus1	89	70.115	Esox_lucius
ENSRNOG00000037500	Pus1	95	79.901	ENSFCAG00000010780	PUS1	97	78.365	Felis_catus
ENSRNOG00000037500	Pus1	87	78.495	ENSFALG00000008273	PUS1	87	78.495	Ficedula_albicollis
ENSRNOG00000037500	Pus1	99	83.688	ENSFDAG00000012518	PUS1	100	84.161	Fukomys_damarensis
ENSRNOG00000037500	Pus1	86	68.120	ENSFHEG00000010504	pus1	88	68.120	Fundulus_heteroclitus
ENSRNOG00000037500	Pus1	85	65.746	ENSGMOG00000008143	pus1	93	65.746	Gadus_morhua
ENSRNOG00000037500	Pus1	93	73.815	ENSGALG00000002354	PUS1	98	73.815	Gallus_gallus
ENSRNOG00000037500	Pus1	86	67.575	ENSGAFG00000006578	pus1	88	67.575	Gambusia_affinis
ENSRNOG00000037500	Pus1	83	67.042	ENSGACG00000017566	pus1	91	67.042	Gasterosteus_aculeatus
ENSRNOG00000037500	Pus1	83	72.365	ENSGAGG00000016730	-	94	75.904	Gopherus_agassizii
ENSRNOG00000037500	Pus1	98	84.323	ENSGGOG00000009178	PUS1	99	84.323	Gorilla_gorilla
ENSRNOG00000037500	Pus1	86	68.579	ENSHBUG00000001316	pus1	94	68.579	Haplochromis_burtoni
ENSRNOG00000037500	Pus1	92	83.632	ENSHGLG00000016086	PUS1	100	83.632	Heterocephalus_glaber_female
ENSRNOG00000037500	Pus1	92	83.120	ENSHGLG00100019362	PUS1	100	83.120	Heterocephalus_glaber_male
ENSRNOG00000037500	Pus1	81	70.145	ENSHCOG00000014288	pus1	80	70.145	Hippocampus_comes
ENSRNOG00000037500	Pus1	95	65.586	ENSIPUG00000010387	pus1	94	65.586	Ictalurus_punctatus
ENSRNOG00000037500	Pus1	98	88.378	ENSSTOG00000011245	PUS1	99	88.180	Ictidomys_tridecemlineatus
ENSRNOG00000037500	Pus1	100	89.598	ENSJJAG00000000088	Pus1	100	89.598	Jaculus_jaculus
ENSRNOG00000037500	Pus1	86	66.757	ENSKMAG00000012702	pus1	88	66.757	Kryptolebias_marmoratus
ENSRNOG00000037500	Pus1	86	65.591	ENSLBEG00000002845	pus1	92	65.591	Labrus_bergylta
ENSRNOG00000037500	Pus1	82	76.000	ENSLACG00000018598	PUS1	92	73.046	Latimeria_chalumnae
ENSRNOG00000037500	Pus1	76	57.632	ENSLACG00000016044	-	97	57.632	Latimeria_chalumnae
ENSRNOG00000037500	Pus1	86	75.000	ENSLOCG00000006127	pus1	92	75.000	Lepisosteus_oculatus
ENSRNOG00000037500	Pus1	87	80.323	ENSLAFG00000028731	PUS1	100	80.323	Loxodonta_africana
ENSRNOG00000037500	Pus1	93	86.534	ENSMFAG00000041194	PUS1	99	86.534	Macaca_fascicularis
ENSRNOG00000037500	Pus1	95	82.494	ENSMMUG00000031463	PUS1	99	86.269	Macaca_mulatta
ENSRNOG00000037500	Pus1	98	85.036	ENSMNEG00000002814	PUS1	99	85.036	Macaca_nemestrina
ENSRNOG00000037500	Pus1	78	91.159	ENSMLEG00000043560	PUS1	100	91.411	Mandrillus_leucophaeus
ENSRNOG00000037500	Pus1	80	69.591	ENSMAMG00000007371	pus1	81	69.591	Mastacembelus_armatus
ENSRNOG00000037500	Pus1	86	68.579	ENSMZEG00005017746	pus1	87	68.579	Maylandia_zebra
ENSRNOG00000037500	Pus1	77	80.909	ENSMGAG00000001958	PUS1	100	80.909	Meleagris_gallopavo
ENSRNOG00000037500	Pus1	58	30.337	ENSMGAG00000000851	PUS3	63	30.337	Meleagris_gallopavo
ENSRNOG00000037500	Pus1	100	95.508	ENSMAUG00000001482	Pus1	100	95.508	Mesocricetus_auratus
ENSRNOG00000037500	Pus1	97	81.235	ENSMICG00000030980	PUS1	100	83.623	Microcebus_murinus
ENSRNOG00000037500	Pus1	100	95.745	ENSMOCG00000022311	Pus1	100	95.745	Microtus_ochrogaster
ENSRNOG00000037500	Pus1	87	66.938	ENSMMOG00000021022	pus1	94	66.938	Mola_mola
ENSRNOG00000037500	Pus1	88	77.984	ENSMODG00000015551	PUS1	94	71.429	Monodelphis_domestica
ENSRNOG00000037500	Pus1	85	67.680	ENSMALG00000013202	pus1	87	67.680	Monopterus_albus
ENSRNOG00000037500	Pus1	100	98.818	MGP_CAROLIEiJ_G0027551	Pus1	100	98.818	Mus_caroli
ENSRNOG00000037500	Pus1	100	98.582	ENSMUSG00000029507	Pus1	100	98.728	Mus_musculus
ENSRNOG00000037500	Pus1	100	98.109	MGP_PahariEiJ_G0024133	Pus1	100	98.109	Mus_pahari
ENSRNOG00000037500	Pus1	100	98.582	MGP_SPRETEiJ_G0028549	Pus1	100	98.728	Mus_spretus
ENSRNOG00000037500	Pus1	90	82.216	ENSMPUG00000002314	PUS1	98	82.216	Mustela_putorius_furo
ENSRNOG00000037500	Pus1	83	85.511	ENSMLUG00000015790	PUS1	96	85.511	Myotis_lucifugus
ENSRNOG00000037500	Pus1	100	91.726	ENSNGAG00000012976	Pus1	100	91.726	Nannospalax_galili
ENSRNOG00000037500	Pus1	83	69.492	ENSNBRG00000020502	pus1	94	70.000	Neolamprologus_brichardi
ENSRNOG00000037500	Pus1	87	88.649	ENSNLEG00000008505	PUS1	100	92.429	Nomascus_leucogenys
ENSRNOG00000037500	Pus1	88	69.811	ENSMEUG00000002825	PUS1	98	69.811	Notamacropus_eugenii
ENSRNOG00000037500	Pus1	89	74.607	ENSOPRG00000002701	-	99	74.607	Ochotona_princeps
ENSRNOG00000037500	Pus1	99	81.280	ENSODEG00000008248	PUS1	97	87.903	Octodon_degus
ENSRNOG00000037500	Pus1	86	67.385	ENSONIG00000003803	pus1	93	67.385	Oreochromis_niloticus
ENSRNOG00000037500	Pus1	96	71.599	ENSOANG00000010619	PUS1	96	71.599	Ornithorhynchus_anatinus
ENSRNOG00000037500	Pus1	86	84.677	ENSOCUG00000007310	PUS1	84	83.679	Oryctolagus_cuniculus
ENSRNOG00000037500	Pus1	83	69.688	ENSORLG00000010787	pus1	85	69.688	Oryzias_latipes
ENSRNOG00000037500	Pus1	83	70.255	ENSORLG00020011483	pus1	85	70.255	Oryzias_latipes_hni
ENSRNOG00000037500	Pus1	83	70.538	ENSORLG00015023012	pus1	91	70.538	Oryzias_latipes_hsok
ENSRNOG00000037500	Pus1	81	70.520	ENSOMEG00000022655	pus1	81	70.520	Oryzias_melastigma
ENSRNOG00000037500	Pus1	89	86.684	ENSOGAG00000008720	PUS1	99	86.684	Otolemur_garnettii
ENSRNOG00000037500	Pus1	97	80.769	ENSOARG00000013316	PUS1	100	79.677	Ovis_aries
ENSRNOG00000037500	Pus1	98	84.798	ENSPPAG00000040971	PUS1	99	84.798	Pan_paniscus
ENSRNOG00000037500	Pus1	92	79.648	ENSPPRG00000015456	PUS1	100	79.648	Panthera_pardus
ENSRNOG00000037500	Pus1	81	85.380	ENSPTIG00000004201	PUS1	92	83.898	Panthera_tigris_altaica
ENSRNOG00000037500	Pus1	98	84.086	ENSPTRG00000005643	PUS1	99	84.086	Pan_troglodytes
ENSRNOG00000037500	Pus1	98	84.798	ENSPANG00000000376	PUS1	99	84.798	Papio_anubis
ENSRNOG00000037500	Pus1	93	65.679	ENSPKIG00000019369	pus1	92	65.679	Paramormyrops_kingsleyae
ENSRNOG00000037500	Pus1	85	76.309	ENSPSIG00000016432	PUS1	86	75.946	Pelodiscus_sinensis
ENSRNOG00000037500	Pus1	81	69.006	ENSPMGG00000004522	pus1	89	69.006	Periophthalmus_magnuspinnatus
ENSRNOG00000037500	Pus1	100	96.927	ENSPEMG00000013448	Pus1	100	96.927	Peromyscus_maniculatus_bairdii
ENSRNOG00000037500	Pus1	77	60.245	ENSPMAG00000004636	pus1	99	60.245	Petromyzon_marinus
ENSRNOG00000037500	Pus1	74	69.745	ENSPCIG00000022609	-	75	69.716	Phascolarctos_cinereus
ENSRNOG00000037500	Pus1	86	67.030	ENSPFOG00000019669	pus1	88	67.030	Poecilia_formosa
ENSRNOG00000037500	Pus1	86	67.030	ENSPLAG00000002692	-	88	67.030	Poecilia_latipinna
ENSRNOG00000037500	Pus1	86	67.030	ENSPLAG00000007185	pus1	88	67.030	Poecilia_latipinna
ENSRNOG00000037500	Pus1	86	67.030	ENSPMEG00000011115	PUS1	88	67.030	Poecilia_mexicana
ENSRNOG00000037500	Pus1	86	67.030	ENSPMEG00000006038	pus1	91	67.030	Poecilia_mexicana
ENSRNOG00000037500	Pus1	86	67.302	ENSPREG00000007231	pus1	99	68.067	Poecilia_reticulata
ENSRNOG00000037500	Pus1	98	84.928	ENSPPYG00000005132	PUS1	99	84.928	Pongo_abelii
ENSRNOG00000037500	Pus1	62	78.544	ENSPCAG00000009110	-	64	78.544	Procavia_capensis
ENSRNOG00000037500	Pus1	93	78.500	ENSPCOG00000015595	PUS1	100	78.500	Propithecus_coquereli
ENSRNOG00000037500	Pus1	86	68.306	ENSPNYG00000013571	pus1	87	68.306	Pundamilia_nyererei
ENSRNOG00000037500	Pus1	82	72.543	ENSPNAG00000003938	pus1	82	72.543	Pygocentrus_nattereri
ENSRNOG00000037500	Pus1	93	86.717	ENSRBIG00000043177	PUS1	100	86.717	Rhinopithecus_bieti
ENSRNOG00000037500	Pus1	98	84.798	ENSRROG00000039744	PUS1	99	84.798	Rhinopithecus_roxellana
ENSRNOG00000037500	Pus1	77	44.697	YPL212C	-	60	44.697	Saccharomyces_cerevisiae
ENSRNOG00000037500	Pus1	93	85.000	ENSSBOG00000023593	PUS1	100	85.000	Saimiri_boliviensis_boliviensis
ENSRNOG00000037500	Pus1	95	74.877	ENSSHAG00000013193	PUS1	95	74.010	Sarcophilus_harrisii
ENSRNOG00000037500	Pus1	85	73.077	ENSSFOG00015003463	pus1	82	73.077	Scleropages_formosus
ENSRNOG00000037500	Pus1	86	66.758	ENSSMAG00000019075	pus1	87	66.125	Scophthalmus_maximus
ENSRNOG00000037500	Pus1	86	67.024	ENSSDUG00000007102	pus1	87	68.033	Seriola_dumerili
ENSRNOG00000037500	Pus1	86	66.488	ENSSLDG00000022850	pus1	87	67.486	Seriola_lalandi_dorsalis
ENSRNOG00000037500	Pus1	72	76.974	ENSSARG00000008367	PUS1	98	76.974	Sorex_araneus
ENSRNOG00000037500	Pus1	87	76.408	ENSSPUG00000010009	PUS1	93	76.408	Sphenodon_punctatus
ENSRNOG00000037500	Pus1	84	68.889	ENSSPAG00000006272	pus1	92	68.889	Stegastes_partitus
ENSRNOG00000037500	Pus1	100	80.600	ENSSSCG00000009741	PUS1	100	82.500	Sus_scrofa
ENSRNOG00000037500	Pus1	78	82.424	ENSTGUG00000008068	PUS1	100	82.424	Taeniopygia_guttata
ENSRNOG00000037500	Pus1	83	68.451	ENSTRUG00000002198	pus1	91	68.362	Takifugu_rubripes
ENSRNOG00000037500	Pus1	85	66.851	ENSTNIG00000003942	pus1	92	67.127	Tetraodon_nigroviridis
ENSRNOG00000037500	Pus1	98	80.430	ENSTTRG00000000632	PUS1	99	80.430	Tursiops_truncatus
ENSRNOG00000037500	Pus1	92	81.407	ENSUAMG00000017197	PUS1	100	81.407	Ursus_americanus
ENSRNOG00000037500	Pus1	93	80.612	ENSUMAG00000002831	PUS1	100	86.905	Ursus_maritimus
ENSRNOG00000037500	Pus1	94	80.049	ENSVVUG00000004199	PUS1	93	80.049	Vulpes_vulpes
ENSRNOG00000037500	Pus1	76	50.156	ENSXETG00000033640	-	100	50.156	Xenopus_tropicalis
ENSRNOG00000037500	Pus1	85	70.833	ENSXETG00000002030	pus1	90	70.833	Xenopus_tropicalis
ENSRNOG00000037500	Pus1	86	67.486	ENSXCOG00000004722	pus1	95	67.486	Xiphophorus_couchianus
ENSRNOG00000037500	Pus1	86	67.302	ENSXMAG00000000988	pus1	88	67.302	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000049	tRNA binding	-	ISO	Function
GO:0000049	tRNA binding	-	ISS	Function
GO:0000790	nuclear chromatin	-	ISO	Component
GO:0002153	steroid receptor RNA activator RNA binding	-	ISO	Function
GO:0002153	steroid receptor RNA activator RNA binding	-	ISS	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005667	transcription factor complex	-	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005739	mitochondrion	-	IEA	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0009982	pseudouridine synthase activity	21873635.	IBA	Function
GO:0009982	pseudouridine synthase activity	-	ISO	Function
GO:0009982	pseudouridine synthase activity	-	ISS	Function
GO:0030374	nuclear receptor transcription coactivator activity	-	ISO	Function
GO:0031119	tRNA pseudouridine synthesis	21873635.	IBA	Process
GO:0031119	tRNA pseudouridine synthesis	-	ISO	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0106029	tRNA pseudouridine synthase activity	-	IEA	Function
GO:0106029	tRNA pseudouridine synthase activity	-	ISO	Function
GO:1990481	mRNA pseudouridine synthesis	21873635.	IBA	Process