EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000039241 (Gene tree)
Gene ID: 307446
Gene Symbol: Ythdc2
Alias: LOC307446|RGD1563192
Full Name: YTH domain containing 2
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 54672 bases
Position: chr1:182085899-182140570
Accession: 1563192
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000056847	R3H	PF01424.22	7.5e-11	1	1
ENSRNOP00000056847	DEAD	PF00270.29	1.2e-09	1	1
ENSRNOP00000056847	HA2	PF04408.23	4.7e-12	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000060098	-	3828	XM_008759850	ENSRNOP00000056847	1276 (aa)	XP_008758072	D3ZIV8

Gene Model

Click here to download ENSRNOG00000039241's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000039241's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000039241	Ythdc2	50	41.063	ENSRNOG00000003844	Dhx15	78	41.262
ENSRNOG00000039241	Ythdc2	59	49.519	ENSRNOG00000010369	Dhx29	53	49.519
ENSRNOG00000039241	Ythdc2	61	48.768	ENSRNOG00000002735	Dhx9	64	47.685
ENSRNOG00000039241	Ythdc2	52	47.236	ENSRNOG00000029194	Dhx30	61	42.105
ENSRNOG00000039241	Ythdc2	58	33.667	ENSRNOG00000020772	Dhx8	60	33.667
ENSRNOG00000039241	Ythdc2	55	50.794	ENSRNOG00000054272	Dhx57	58	50.794
ENSRNOG00000039241	Ythdc2	65	42.804	ENSRNOG00000014599	Dhx36	76	46.383

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000039241	Ythdc2	98	93.780	ENSG00000047188	YTHDC2	99	99.265	Homo_sapiens
ENSRNOG00000039241	Ythdc2	64	64.828	ENSAPOG00000013442	YTHDC2	74	65.947	Acanthochromis_polyacanthus
ENSRNOG00000039241	Ythdc2	99	94.275	ENSAMEG00000006598	YTHDC2	89	94.275	Ailuropoda_melanoleuca
ENSRNOG00000039241	Ythdc2	91	66.638	ENSACIG00000012809	YTHDC2	86	66.553	Amphilophus_citrinellus
ENSRNOG00000039241	Ythdc2	87	64.343	ENSAOCG00000018480	YTHDC2	87	66.053	Amphiprion_ocellaris
ENSRNOG00000039241	Ythdc2	97	63.556	ENSAPEG00000014873	YTHDC2	87	66.354	Amphiprion_percula
ENSRNOG00000039241	Ythdc2	97	62.821	ENSATEG00000010847	YTHDC2	83	65.085	Anabas_testudineus
ENSRNOG00000039241	Ythdc2	98	88.038	ENSACAG00000007754	YTHDC2	87	88.038	Anolis_carolinensis
ENSRNOG00000039241	Ythdc2	99	91.429	ENSANAG00000022177	YTHDC2	87	91.454	Aotus_nancymaae
ENSRNOG00000039241	Ythdc2	94	64.487	ENSACLG00000019069	YTHDC2	85	64.618	Astatotilapia_calliptera
ENSRNOG00000039241	Ythdc2	100	71.573	ENSAMXG00000008735	YTHDC2	86	73.301	Astyanax_mexicanus
ENSRNOG00000039241	Ythdc2	99	94.466	ENSBTAG00000014099	YTHDC2	87	95.114	Bos_taurus
ENSRNOG00000039241	Ythdc2	98	91.228	ENSCJAG00000016598	YTHDC2	87	90.989	Callithrix_jacchus
ENSRNOG00000039241	Ythdc2	95	89.245	ENSCAFG00000000224	YTHDC2	99	94.212	Canis_familiaris
ENSRNOG00000039241	Ythdc2	98	93.939	ENSCAFG00020003668	YTHDC2	86	95.567	Canis_lupus_dingo
ENSRNOG00000039241	Ythdc2	99	94.466	ENSCHIG00000026651	YTHDC2	87	94.258	Capra_hircus
ENSRNOG00000039241	Ythdc2	94	95.266	ENSTSYG00000009634	YTHDC2	86	95.266	Carlito_syrichta
ENSRNOG00000039241	Ythdc2	95	71.817	ENSCAPG00000015691	YTHDC2	96	71.817	Cavia_aperea
ENSRNOG00000039241	Ythdc2	98	93.561	ENSCPOG00000000272	YTHDC2	87	93.879	Cavia_porcellus
ENSRNOG00000039241	Ythdc2	98	94.179	ENSCCAG00000037613	YTHDC2	87	94.099	Cebus_capucinus
ENSRNOG00000039241	Ythdc2	98	93.700	ENSCATG00000031670	YTHDC2	87	93.700	Cercocebus_atys
ENSRNOG00000039241	Ythdc2	98	92.722	ENSCLAG00000014076	YTHDC2	88	92.959	Chinchilla_lanigera
ENSRNOG00000039241	Ythdc2	98	93.620	ENSCSAG00000014899	YTHDC2	87	93.620	Chlorocebus_sabaeus
ENSRNOG00000039241	Ythdc2	86	100.000	ENSCHOG00000013323	YTHDC2	81	98.305	Choloepus_hoffmanni
ENSRNOG00000039241	Ythdc2	94	91.294	ENSCPBG00000013876	YTHDC2	87	89.793	Chrysemys_picta_bellii
ENSRNOG00000039241	Ythdc2	98	93.700	ENSCANG00000025759	YTHDC2	87	93.700	Colobus_angolensis_palliatus
ENSRNOG00000039241	Ythdc2	100	96.482	ENSCGRG00001021338	Ythdc2	89	96.482	Cricetulus_griseus_chok1gshd
ENSRNOG00000039241	Ythdc2	95	95.488	ENSCGRG00000010336	Ythdc2	87	94.817	Cricetulus_griseus_crigri
ENSRNOG00000039241	Ythdc2	91	52.267	ENSCSEG00000017911	YTHDC2	97	52.267	Cynoglossus_semilaevis
ENSRNOG00000039241	Ythdc2	91	62.340	ENSCVAG00000021377	YTHDC2	90	58.661	Cyprinodon_variegatus
ENSRNOG00000039241	Ythdc2	92	64.100	ENSDARG00000103525	YTHDC2	82	64.154	Danio_rerio
ENSRNOG00000039241	Ythdc2	98	91.083	ENSDNOG00000012198	YTHDC2	87	91.083	Dasypus_novemcinctus
ENSRNOG00000039241	Ythdc2	94	90.365	ENSDORG00000007057	Ythdc2	84	90.528	Dipodomys_ordii
ENSRNOG00000039241	Ythdc2	68	33.676	FBgn0030833	CG8915	82	35.799	Drosophila_melanogaster
ENSRNOG00000039241	Ythdc2	82	95.131	ENSETEG00000013681	YTHDC2	72	95.131	Echinops_telfairi
ENSRNOG00000039241	Ythdc2	85	54.803	ENSEBUG00000014315	-	77	54.803	Eptatretus_burgeri
ENSRNOG00000039241	Ythdc2	100	95.391	ENSEASG00005015135	YTHDC2	89	95.391	Equus_asinus_asinus
ENSRNOG00000039241	Ythdc2	100	95.234	ENSECAG00000020630	YTHDC2	94	95.234	Equus_caballus
ENSRNOG00000039241	Ythdc2	82	98.000	ENSEEUG00000008580	YTHDC2	76	98.305	Erinaceus_europaeus
ENSRNOG00000039241	Ythdc2	100	71.979	ENSELUG00000015902	YTHDC2	83	75.081	Esox_lucius
ENSRNOG00000039241	Ythdc2	95	95.481	ENSFCAG00000031967	YTHDC2	92	94.418	Felis_catus
ENSRNOG00000039241	Ythdc2	91	81.654	ENSFALG00000002623	-	87	81.762	Ficedula_albicollis
ENSRNOG00000039241	Ythdc2	94	81.235	ENSFALG00000000040	-	87	81.971	Ficedula_albicollis
ENSRNOG00000039241	Ythdc2	95	93.919	ENSFDAG00000008701	YTHDC2	87	93.919	Fukomys_damarensis
ENSRNOG00000039241	Ythdc2	91	64.322	ENSFHEG00000009312	YTHDC2	83	64.151	Fundulus_heteroclitus
ENSRNOG00000039241	Ythdc2	50	70.681	ENSGMOG00000000789	YTHDC2	85	70.681	Gadus_morhua
ENSRNOG00000039241	Ythdc2	97	80.853	ENSGALG00000000189	YTHDC2	87	81.397	Gallus_gallus
ENSRNOG00000039241	Ythdc2	88	59.011	ENSGAFG00000008158	YTHDC2	97	55.635	Gambusia_affinis
ENSRNOG00000039241	Ythdc2	61	73.289	ENSGACG00000018569	YTHDC2	99	73.289	Gasterosteus_aculeatus
ENSRNOG00000039241	Ythdc2	92	91.341	ENSGAGG00000010063	YTHDC2	91	91.323	Gopherus_agassizii
ENSRNOG00000039241	Ythdc2	98	93.780	ENSGGOG00000014407	YTHDC2	87	93.780	Gorilla_gorilla
ENSRNOG00000039241	Ythdc2	96	63.496	ENSHBUG00000007492	YTHDC2	95	64.667	Haplochromis_burtoni
ENSRNOG00000039241	Ythdc2	99	93.518	ENSHGLG00000019014	YTHDC2	87	93.700	Heterocephalus_glaber_female
ENSRNOG00000039241	Ythdc2	99	93.518	ENSHGLG00100008192	YTHDC2	87	93.700	Heterocephalus_glaber_male
ENSRNOG00000039241	Ythdc2	89	59.792	ENSHCOG00000014281	YTHDC2	84	60.406	Hippocampus_comes
ENSRNOG00000039241	Ythdc2	95	73.667	ENSIPUG00000019561	ythdc2	84	73.667	Ictalurus_punctatus
ENSRNOG00000039241	Ythdc2	98	93.005	ENSSTOG00000013239	YTHDC2	87	93.164	Ictidomys_tridecemlineatus
ENSRNOG00000039241	Ythdc2	98	90.008	ENSJJAG00000017908	Ythdc2	87	90.087	Jaculus_jaculus
ENSRNOG00000039241	Ythdc2	90	65.568	ENSKMAG00000015969	YTHDC2	84	65.428	Kryptolebias_marmoratus
ENSRNOG00000039241	Ythdc2	98	62.302	ENSLBEG00000027926	YTHDC2	85	63.851	Labrus_bergylta
ENSRNOG00000039241	Ythdc2	99	83.254	ENSLACG00000010991	YTHDC2	87	82.948	Latimeria_chalumnae
ENSRNOG00000039241	Ythdc2	99	74.744	ENSLOCG00000009001	YTHDC2	86	75.854	Lepisosteus_oculatus
ENSRNOG00000039241	Ythdc2	85	94.698	ENSLAFG00000003538	YTHDC2	100	92.038	Loxodonta_africana
ENSRNOG00000039241	Ythdc2	98	93.780	ENSMNEG00000040900	YTHDC2	87	93.780	Macaca_nemestrina
ENSRNOG00000039241	Ythdc2	98	93.860	ENSMLEG00000043185	YTHDC2	87	93.860	Mandrillus_leucophaeus
ENSRNOG00000039241	Ythdc2	92	67.257	ENSMAMG00000019193	YTHDC2	83	67.343	Mastacembelus_armatus
ENSRNOG00000039241	Ythdc2	91	65.864	ENSMZEG00005009153	YTHDC2	87	64.321	Maylandia_zebra
ENSRNOG00000039241	Ythdc2	94	75.145	ENSMGAG00000006674	YTHDC2	100	74.590	Meleagris_gallopavo
ENSRNOG00000039241	Ythdc2	98	95.091	ENSMAUG00000016179	Ythdc2	88	95.170	Mesocricetus_auratus
ENSRNOG00000039241	Ythdc2	98	94.670	ENSMICG00000004030	YTHDC2	92	94.829	Microcebus_murinus
ENSRNOG00000039241	Ythdc2	98	95.458	ENSMOCG00000011740	Ythdc2	87	95.697	Microtus_ochrogaster
ENSRNOG00000039241	Ythdc2	92	63.939	ENSMMOG00000011758	YTHDC2	93	63.939	Mola_mola
ENSRNOG00000039241	Ythdc2	97	93.323	ENSMODG00000015671	YTHDC2	88	92.581	Monodelphis_domestica
ENSRNOG00000039241	Ythdc2	97	64.263	ENSMALG00000002782	YTHDC2	96	65.805	Monopterus_albus
ENSRNOG00000039241	Ythdc2	95	96.390	MGP_CAROLIEiJ_G0022248	Ythdc2	98	98.435	Mus_caroli
ENSRNOG00000039241	Ythdc2	95	96.390	ENSMUSG00000034653	Ythdc2	98	98.435	Mus_musculus
ENSRNOG00000039241	Ythdc2	98	95.649	MGP_PahariEiJ_G0018981	Ythdc2	98	98.609	Mus_pahari
ENSRNOG00000039241	Ythdc2	98	95.166	MGP_SPRETEiJ_G0023159	Ythdc2	98	98.435	Mus_spretus
ENSRNOG00000039241	Ythdc2	93	95.707	ENSMPUG00000000755	YTHDC2	86	95.707	Mustela_putorius_furo
ENSRNOG00000039241	Ythdc2	100	93.779	ENSMLUG00000006106	YTHDC2	89	93.779	Myotis_lucifugus
ENSRNOG00000039241	Ythdc2	100	94.762	ENSNGAG00000017798	Ythdc2	89	94.762	Nannospalax_galili
ENSRNOG00000039241	Ythdc2	96	63.468	ENSNBRG00000000762	YTHDC2	84	64.784	Neolamprologus_brichardi
ENSRNOG00000039241	Ythdc2	98	93.381	ENSNLEG00000011648	YTHDC2	87	93.620	Nomascus_leucogenys
ENSRNOG00000039241	Ythdc2	81	96.486	ENSMEUG00000004414	YTHDC2	72	96.486	Notamacropus_eugenii
ENSRNOG00000039241	Ythdc2	75	100.000	ENSOPRG00000000462	YTHDC2	65	100.000	Ochotona_princeps
ENSRNOG00000039241	Ythdc2	98	93.541	ENSODEG00000007804	YTHDC2	87	93.461	Octodon_degus
ENSRNOG00000039241	Ythdc2	97	63.397	ENSONIG00000011601	YTHDC2	87	64.292	Oreochromis_niloticus
ENSRNOG00000039241	Ythdc2	93	95.451	ENSOCUG00000012096	YTHDC2	87	95.451	Oryctolagus_cuniculus
ENSRNOG00000039241	Ythdc2	92	56.218	ENSORLG00000019098	YTHDC2	75	74.384	Oryzias_latipes
ENSRNOG00000039241	Ythdc2	92	56.098	ENSORLG00015000390	YTHDC2	84	56.098	Oryzias_latipes_hsok
ENSRNOG00000039241	Ythdc2	97	56.441	ENSOMEG00000014221	YTHDC2	90	57.167	Oryzias_melastigma
ENSRNOG00000039241	Ythdc2	95	96.141	ENSOGAG00000001618	YTHDC2	87	95.462	Otolemur_garnettii
ENSRNOG00000039241	Ythdc2	95	93.852	ENSOARG00000016223	YTHDC2	88	91.759	Ovis_aries
ENSRNOG00000039241	Ythdc2	98	93.939	ENSPPAG00000018854	YTHDC2	87	93.939	Pan_paniscus
ENSRNOG00000039241	Ythdc2	95	95.481	ENSPPRG00000001595	YTHDC2	87	94.418	Panthera_pardus
ENSRNOG00000039241	Ythdc2	93	95.282	ENSPTIG00000021801	YTHDC2	83	95.282	Panthera_tigris_altaica
ENSRNOG00000039241	Ythdc2	98	93.939	ENSPTRG00000017143	YTHDC2	87	93.939	Pan_troglodytes
ENSRNOG00000039241	Ythdc2	98	88.676	ENSPANG00000024470	YTHDC2	93	83.505	Papio_anubis
ENSRNOG00000039241	Ythdc2	96	71.580	ENSPKIG00000016010	YTHDC2	86	71.803	Paramormyrops_kingsleyae
ENSRNOG00000039241	Ythdc2	93	91.238	ENSPSIG00000014798	YTHDC2	87	91.238	Pelodiscus_sinensis
ENSRNOG00000039241	Ythdc2	56	61.958	ENSPMGG00000020677	YTHDC2	97	62.219	Periophthalmus_magnuspinnatus
ENSRNOG00000039241	Ythdc2	98	95.480	ENSPEMG00000018062	Ythdc2	88	95.083	Peromyscus_maniculatus_bairdii
ENSRNOG00000039241	Ythdc2	97	62.600	ENSPMAG00000003218	-	85	64.167	Petromyzon_marinus
ENSRNOG00000039241	Ythdc2	99	93.349	ENSPCIG00000004342	YTHDC2	91	93.381	Phascolarctos_cinereus
ENSRNOG00000039241	Ythdc2	95	63.287	ENSPFOG00000003895	YTHDC2	87	63.287	Poecilia_formosa
ENSRNOG00000039241	Ythdc2	92	64.085	ENSPLAG00000007558	YTHDC2	83	64.085	Poecilia_latipinna
ENSRNOG00000039241	Ythdc2	91	65.292	ENSPMEG00000015205	YTHDC2	84	64.987	Poecilia_mexicana
ENSRNOG00000039241	Ythdc2	91	64.109	ENSPREG00000012096	YTHDC2	85	63.901	Poecilia_reticulata
ENSRNOG00000039241	Ythdc2	100	93.276	ENSPPYG00000015691	YTHDC2	89	93.276	Pongo_abelii
ENSRNOG00000039241	Ythdc2	86	95.109	ENSPCAG00000007733	YTHDC2	80	95.337	Procavia_capensis
ENSRNOG00000039241	Ythdc2	95	89.262	ENSPCOG00000017526	YTHDC2	89	88.465	Propithecus_coquereli
ENSRNOG00000039241	Ythdc2	92	100.000	ENSPVAG00000012364	YTHDC2	81	100.000	Pteropus_vampyrus
ENSRNOG00000039241	Ythdc2	94	63.997	ENSPNYG00000006908	YTHDC2	86	64.126	Pundamilia_nyererei
ENSRNOG00000039241	Ythdc2	97	74.178	ENSPNAG00000010128	YTHDC2	86	75.164	Pygocentrus_nattereri
ENSRNOG00000039241	Ythdc2	98	90.363	ENSRBIG00000040291	YTHDC2	87	90.363	Rhinopithecus_bieti
ENSRNOG00000039241	Ythdc2	98	93.700	ENSRROG00000039477	YTHDC2	87	93.700	Rhinopithecus_roxellana
ENSRNOG00000039241	Ythdc2	98	94.179	ENSSBOG00000023829	YTHDC2	87	94.179	Saimiri_boliviensis_boliviensis
ENSRNOG00000039241	Ythdc2	95	94.628	ENSSHAG00000003101	YTHDC2	86	94.599	Sarcophilus_harrisii
ENSRNOG00000039241	Ythdc2	96	68.314	ENSSFOG00015003572	ythdc2	88	68.822	Scleropages_formosus
ENSRNOG00000039241	Ythdc2	90	56.163	ENSSMAG00000011225	YTHDC2	93	56.163	Scophthalmus_maximus
ENSRNOG00000039241	Ythdc2	93	65.498	ENSSDUG00000021389	YTHDC2	84	66.197	Seriola_dumerili
ENSRNOG00000039241	Ythdc2	93	67.758	ENSSLDG00000022840	YTHDC2	84	68.136	Seriola_lalandi_dorsalis
ENSRNOG00000039241	Ythdc2	81	94.118	ENSSARG00000000924	YTHDC2	78	94.118	Sorex_araneus
ENSRNOG00000039241	Ythdc2	58	85.330	ENSSPUG00000015912	-	100	85.061	Sphenodon_punctatus
ENSRNOG00000039241	Ythdc2	94	64.575	ENSSPAG00000014889	YTHDC2	96	66.214	Stegastes_partitus
ENSRNOG00000039241	Ythdc2	95	95.809	ENSSSCG00000014211	YTHDC2	87	94.817	Sus_scrofa
ENSRNOG00000039241	Ythdc2	78	78.536	ENSTGUG00000014992	-	97	79.012	Taeniopygia_guttata
ENSRNOG00000039241	Ythdc2	91	80.034	ENSTGUG00000003755	-	87	80.087	Taeniopygia_guttata
ENSRNOG00000039241	Ythdc2	90	60.308	ENSTRUG00000006717	YTHDC2	86	60.308	Takifugu_rubripes
ENSRNOG00000039241	Ythdc2	85	62.500	ENSTNIG00000003707	YTHDC2	82	62.500	Tetraodon_nigroviridis
ENSRNOG00000039241	Ythdc2	82	91.817	ENSTBEG00000006872	YTHDC2	77	91.935	Tupaia_belangeri
ENSRNOG00000039241	Ythdc2	84	80.154	ENSTTRG00000003116	YTHDC2	74	79.383	Tursiops_truncatus
ENSRNOG00000039241	Ythdc2	85	94.031	ENSUAMG00000003688	YTHDC2	99	94.031	Ursus_americanus
ENSRNOG00000039241	Ythdc2	93	95.569	ENSUMAG00000023877	YTHDC2	87	95.569	Ursus_maritimus
ENSRNOG00000039241	Ythdc2	96	84.603	ENSVPAG00000007516	YTHDC2	87	83.971	Vicugna_pacos
ENSRNOG00000039241	Ythdc2	95	95.727	ENSVVUG00000000281	YTHDC2	92	94.817	Vulpes_vulpes
ENSRNOG00000039241	Ythdc2	98	76.025	ENSXETG00000021517	ythdc2	100	73.549	Xenopus_tropicalis
ENSRNOG00000039241	Ythdc2	91	63.582	ENSXCOG00000016406	YTHDC2	87	62.910	Xiphophorus_couchianus
ENSRNOG00000039241	Ythdc2	91	64.219	ENSXMAG00000007618	YTHDC2	83	64.103	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	ISO	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005783	endoplasmic reticulum	-	ISO	Component
GO:0005783	endoplasmic reticulum	-	ISO	Component
GO:0007286	spermatid development	-	IEA	Process
GO:0007286	spermatid development	-	ISO	Process
GO:0008186	RNA-dependent ATPase activity	-	ISO	Function
GO:0034458	3'-5' RNA helicase activity	-	ISO	Function
GO:0034459	ATP-dependent 3'-5' RNA helicase activity	21873635.	IBA	Function
GO:0034612	response to tumor necrosis factor	-	ISO	Process
GO:0035770	ribonucleoprotein granule	-	IEA	Component
GO:0035770	ribonucleoprotein granule	-	ISO	Component
GO:0044829	positive regulation by host of viral genome replication	-	ISO	Process
GO:0048599	oocyte development	-	IEA	Process
GO:0048599	oocyte development	-	ISO	Process
GO:0051729	germline cell cycle switching, mitotic to meiotic cell cycle	-	IEA	Process
GO:0051729	germline cell cycle switching, mitotic to meiotic cell cycle	-	ISO	Process
GO:0070063	RNA polymerase binding	-	ISO	Function
GO:0070555	response to interleukin-1	-	ISO	Process
GO:1990247	N6-methyladenosine-containing RNA binding	21873635.	IBA	Function
GO:1990247	N6-methyladenosine-containing RNA binding	-	ISO	Function