EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000039876 (Gene tree)
Gene ID: 681410
Gene Symbol: LOC681410
Alias: -
Full Name: hypothetical protein LOC681410
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 903 bases
Position: chr17:6909728-6910630
Accession: 1595414
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000057942	RRM_1	PF00076.22	2.2e-31	1	2
ENSRNOP00000057942	RRM_1	PF00076.22	2.2e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000061231	-	903	XM_003751640	ENSRNOP00000057942	301 (aa)	XP_003751688	F1M3H8

Gene Model

Click here to download ENSRNOG00000039876's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000039876's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000039876	LOC681410	60	40.132	ENSRNOG00000025338	Msi2	55	41.135
ENSRNOG00000039876	LOC681410	63	54.651	ENSRNOG00000011100	AABR07040947.1	73	54.651
ENSRNOG00000039876	LOC681410	59	35.882	ENSRNOG00000003645	LOC103689931	57	35.882
ENSRNOG00000039876	LOC681410	56	34.706	ENSRNOG00000002270	Hnrnpdl	51	34.706
ENSRNOG00000039876	LOC681410	97	51.701	ENSRNOG00000036839	Hnrnpa1	58	59.551
ENSRNOG00000039876	LOC681410	59	35.882	ENSRNOG00000046272	Hnrnpab	57	35.882
ENSRNOG00000039876	LOC681410	50	30.968	ENSRNOG00000012750	Pabpc1l	56	30.247
ENSRNOG00000039876	LOC681410	63	30.469	ENSRNOG00000012455	Tardbp	63	31.579
ENSRNOG00000039876	LOC681410	77	65.000	ENSRNOG00000049527	AC109707.1	67	64.151
ENSRNOG00000039876	LOC681410	50	43.421	ENSRNOG00000015999	Cirbp	61	38.095
ENSRNOG00000039876	LOC681410	88	33.582	ENSRNOG00000002292	Hnrnpd	54	36.842
ENSRNOG00000039876	LOC681410	51	31.788	ENSRNOG00000015642	Pabpc4	53	31.013
ENSRNOG00000039876	LOC681410	62	50.000	ENSRNOG00000051748	AABR07060628.1	84	51.685
ENSRNOG00000039876	LOC681410	60	43.750	ENSRNOG00000005387	Rbm3	68	38.679

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000039876	LOC681410	97	87.584	ENSG00000177733	HNRNPA0	96	88.591	Homo_sapiens
ENSRNOG00000039876	LOC681410	68	52.941	ENSAPOG00000003688	hnrnpa3	50	56.742	Acanthochromis_polyacanthus
ENSRNOG00000039876	LOC681410	60	56.667	ENSAPOG00000003641	hnrnpa3	69	57.143	Acanthochromis_polyacanthus
ENSRNOG00000039876	LOC681410	60	56.667	ENSAPOG00000014678	-	52	56.742	Acanthochromis_polyacanthus
ENSRNOG00000039876	LOC681410	59	62.011	ENSAPOG00000003364	HNRNPA0	58	63.068	Acanthochromis_polyacanthus
ENSRNOG00000039876	LOC681410	60	69.061	ENSAPOG00000003387	HNRNPA0	62	69.663	Acanthochromis_polyacanthus
ENSRNOG00000039876	LOC681410	72	92.130	ENSAMEG00000016316	HNRNPA0	58	98.889	Ailuropoda_melanoleuca
ENSRNOG00000039876	LOC681410	58	56.738	ENSAMEG00000004293	-	66	57.554	Ailuropoda_melanoleuca
ENSRNOG00000039876	LOC681410	69	66.346	ENSACIG00000021834	HNRNPA0	94	61.304	Amphilophus_citrinellus
ENSRNOG00000039876	LOC681410	58	63.068	ENSATEG00000003526	-	93	63.068	Anabas_testudineus
ENSRNOG00000039876	LOC681410	89	88.971	ENSANAG00000017086	HNRNPA0	94	86.395	Aotus_nancymaae
ENSRNOG00000039876	LOC681410	97	87.838	ENSBTAG00000016929	HNRNPA0	93	88.851	Bos_taurus
ENSRNOG00000039876	LOC681410	89	86.081	ENSCJAG00000006112	HNRNPA0	88	88.645	Callithrix_jacchus
ENSRNOG00000039876	LOC681410	89	86.738	ENSCAFG00000001132	HNRNPA0	95	86.711	Canis_familiaris
ENSRNOG00000039876	LOC681410	89	86.738	ENSCAFG00020008142	HNRNPA0	95	86.711	Canis_lupus_dingo
ENSRNOG00000039876	LOC681410	89	88.278	ENSCHIG00000002602	HNRNPA0	95	89.831	Capra_hircus
ENSRNOG00000039876	LOC681410	89	90.441	ENSCPOG00000026092	HNRNPA0	89	87.132	Cavia_porcellus
ENSRNOG00000039876	LOC681410	89	87.546	ENSCCAG00000010302	HNRNPA0	87	88.645	Cebus_capucinus
ENSRNOG00000039876	LOC681410	89	88.321	ENSCATG00000021167	HNRNPA0	87	85.766	Cercocebus_atys
ENSRNOG00000039876	LOC681410	60	51.934	ENSCATG00000038569	-	61	46.047	Cercocebus_atys
ENSRNOG00000039876	LOC681410	89	69.900	ENSCLAG00000015132	HNRNPA0	63	100.000	Chinchilla_lanigera
ENSRNOG00000039876	LOC681410	89	86.861	ENSCSAG00000000499	HNRNPA0	89	87.956	Chlorocebus_sabaeus
ENSRNOG00000039876	LOC681410	89	83.150	ENSCPBG00000008738	HNRNPA0	96	83.729	Chrysemys_picta_bellii
ENSRNOG00000039876	LOC681410	89	87.956	ENSCANG00000038062	HNRNPA0	87	87.956	Colobus_angolensis_palliatus
ENSRNOG00000039876	LOC681410	68	44.608	ENSCGRG00001010070	-	57	46.927	Cricetulus_griseus_chok1gshd
ENSRNOG00000039876	LOC681410	89	90.110	ENSCGRG00001005548	Hnrnpa0	88	89.011	Cricetulus_griseus_chok1gshd
ENSRNOG00000039876	LOC681410	95	48.252	ENSCGRG00000003686	-	63	56.983	Cricetulus_griseus_crigri
ENSRNOG00000039876	LOC681410	68	44.608	ENSCGRG00000007592	-	56	46.927	Cricetulus_griseus_crigri
ENSRNOG00000039876	LOC681410	61	55.191	ENSDARG00000059351	hnrnpa3	74	56.425	Danio_rerio
ENSRNOG00000039876	LOC681410	89	87.726	ENSDNOG00000030903	HNRNPA0	94	87.625	Dasypus_novemcinctus
ENSRNOG00000039876	LOC681410	62	56.989	ENSDNOG00000031964	-	60	58.659	Dasypus_novemcinctus
ENSRNOG00000039876	LOC681410	60	47.514	ENSETEG00000007747	-	62	48.045	Echinops_telfairi
ENSRNOG00000039876	LOC681410	63	52.910	ENSEBUG00000016570	HNRNPA0	53	53.933	Eptatretus_burgeri
ENSRNOG00000039876	LOC681410	89	89.299	ENSECAG00000032164	HNRNPA0	88	87.085	Equus_caballus
ENSRNOG00000039876	LOC681410	91	48.727	ENSELUG00000023080	hnrnpa3	62	56.425	Esox_lucius
ENSRNOG00000039876	LOC681410	89	88.364	ENSFCAG00000040261	HNRNPA0	95	86.195	Felis_catus
ENSRNOG00000039876	LOC681410	97	81.818	ENSFALG00000014395	HNRNPA0	88	82.492	Ficedula_albicollis
ENSRNOG00000039876	LOC681410	97	73.978	ENSFDAG00000019780	HNRNPA0	98	77.258	Fukomys_damarensis
ENSRNOG00000039876	LOC681410	60	44.199	ENSFDAG00000018739	-	63	44.693	Fukomys_damarensis
ENSRNOG00000039876	LOC681410	65	70.440	ENSFHEG00000008384	HNRNPA0	80	70.440	Fundulus_heteroclitus
ENSRNOG00000039876	LOC681410	96	53.242	ENSGMOG00000016232	HNRNPA0	63	65.922	Gadus_morhua
ENSRNOG00000039876	LOC681410	97	83.051	ENSGALG00000006160	HNRNPA0	96	83.729	Gallus_gallus
ENSRNOG00000039876	LOC681410	67	54.455	ENSGACG00000004477	hnrnpa3	59	57.303	Gasterosteus_aculeatus
ENSRNOG00000039876	LOC681410	89	82.418	ENSGAGG00000005632	HNRNPA0	96	84.746	Gopherus_agassizii
ENSRNOG00000039876	LOC681410	60	68.508	ENSHBUG00000023868	HNRNPA0	69	69.101	Haplochromis_burtoni
ENSRNOG00000039876	LOC681410	89	89.630	ENSHGLG00000018216	HNRNPA0	89	88.519	Heterocephalus_glaber_female
ENSRNOG00000039876	LOC681410	60	54.696	ENSHGLG00000014577	-	66	55.307	Heterocephalus_glaber_female
ENSRNOG00000039876	LOC681410	58	67.429	ENSHCOG00000007174	HNRNPA0	96	67.045	Hippocampus_comes
ENSRNOG00000039876	LOC681410	60	45.304	ENSSTOG00000019374	-	85	37.380	Ictidomys_tridecemlineatus
ENSRNOG00000039876	LOC681410	89	82.847	ENSJJAG00000006954	Hnrnpa0	88	82.847	Jaculus_jaculus
ENSRNOG00000039876	LOC681410	98	65.484	ENSLACG00000014480	HNRNPA0	59	80.556	Latimeria_chalumnae
ENSRNOG00000039876	LOC681410	60	59.890	ENSLACG00000008189	hnrnpa3	50	60.674	Latimeria_chalumnae
ENSRNOG00000039876	LOC681410	59	61.783	ENSLAFG00000027712	-	54	63.399	Loxodonta_africana
ENSRNOG00000039876	LOC681410	89	87.956	ENSMFAG00000030522	HNRNPA0	87	87.956	Macaca_fascicularis
ENSRNOG00000039876	LOC681410	60	51.366	ENSMMUG00000031232	-	61	45.622	Macaca_mulatta
ENSRNOG00000039876	LOC681410	89	87.956	ENSMNEG00000015863	HNRNPA0	87	87.956	Macaca_nemestrina
ENSRNOG00000039876	LOC681410	73	46.154	ENSMNEG00000038943	-	73	51.955	Macaca_nemestrina
ENSRNOG00000039876	LOC681410	89	88.321	ENSMLEG00000026629	HNRNPA0	87	85.766	Mandrillus_leucophaeus
ENSRNOG00000039876	LOC681410	74	37.945	ENSMLEG00000033415	-	61	45.581	Mandrillus_leucophaeus
ENSRNOG00000039876	LOC681410	69	64.904	ENSMAMG00000017754	HNRNPA0	69	69.886	Mastacembelus_armatus
ENSRNOG00000039876	LOC681410	89	74.227	ENSMAUG00000018485	Hnrnpa0	60	100.000	Mesocricetus_auratus
ENSRNOG00000039876	LOC681410	65	75.281	ENSMODG00000002463	-	95	75.281	Monodelphis_domestica
ENSRNOG00000039876	LOC681410	66	98.378	ENSMODG00000014720	HNRNPA0	71	98.378	Monodelphis_domestica
ENSRNOG00000039876	LOC681410	96	47.138	ENSMALG00000009691	hnrnpa3	85	48.750	Monopterus_albus
ENSRNOG00000039876	LOC681410	89	94.872	MGP_CAROLIEiJ_G0018593	Hnrnpa0	99	97.705	Mus_caroli
ENSRNOG00000039876	LOC681410	100	97.705	ENSMUSG00000007836	Hnrnpa0	99	97.705	Mus_musculus
ENSRNOG00000039876	LOC681410	89	96.350	MGP_PahariEiJ_G0019657	Hnrnpa0	89	91.606	Mus_pahari
ENSRNOG00000039876	LOC681410	99	98.671	MGP_SPRETEiJ_G0019473	Hnrnpa0	98	98.671	Mus_spretus
ENSRNOG00000039876	LOC681410	89	87.726	ENSMPUG00000019790	HNRNPA0	95	87.291	Mustela_putorius_furo
ENSRNOG00000039876	LOC681410	89	89.668	ENSMLUG00000012683	-	94	88.055	Myotis_lucifugus
ENSRNOG00000039876	LOC681410	89	91.078	ENSNGAG00000008883	Hnrnpa0	89	90.706	Nannospalax_galili
ENSRNOG00000039876	LOC681410	89	87.956	ENSNLEG00000008518	HNRNPA0	86	86.131	Nomascus_leucogenys
ENSRNOG00000039876	LOC681410	89	88.561	ENSMEUG00000013675	HNRNPA0	87	84.133	Notamacropus_eugenii
ENSRNOG00000039876	LOC681410	89	88.321	ENSODEG00000019566	HNRNPA0	89	89.051	Octodon_degus
ENSRNOG00000039876	LOC681410	65	59.669	ENSODEG00000016578	-	57	60.335	Octodon_degus
ENSRNOG00000039876	LOC681410	94	44.014	ENSORLG00000025015	-	57	58.523	Oryzias_latipes
ENSRNOG00000039876	LOC681410	60	60.000	ENSORLG00000027074	-	79	60.795	Oryzias_latipes
ENSRNOG00000039876	LOC681410	94	44.014	ENSORLG00000025332	-	57	58.523	Oryzias_latipes
ENSRNOG00000039876	LOC681410	97	47.284	ENSORLG00020008203	-	59	60.894	Oryzias_latipes_hni
ENSRNOG00000039876	LOC681410	62	61.272	ENSORLG00020007109	-	58	61.047	Oryzias_latipes_hni
ENSRNOG00000039876	LOC681410	97	45.361	ENSORLG00020022487	-	62	58.523	Oryzias_latipes_hni
ENSRNOG00000039876	LOC681410	95	47.078	ENSORLG00020007505	-	58	62.069	Oryzias_latipes_hni
ENSRNOG00000039876	LOC681410	96	47.742	ENSORLG00015016507	-	55	60.335	Oryzias_latipes_hsok
ENSRNOG00000039876	LOC681410	77	52.814	ENSORLG00015015182	-	77	61.582	Oryzias_latipes_hsok
ENSRNOG00000039876	LOC681410	62	59.777	ENSORLG00015015185	-	60	61.628	Oryzias_latipes_hsok
ENSRNOG00000039876	LOC681410	98	44.040	ENSORLG00015016236	HNRNPA0	59	53.947	Oryzias_latipes_hsok
ENSRNOG00000039876	LOC681410	96	47.260	ENSORLG00015016169	HNRNPA0	59	60.571	Oryzias_latipes_hsok
ENSRNOG00000039876	LOC681410	96	50.836	ENSORLG00015017144	-	58	61.714	Oryzias_latipes_hsok
ENSRNOG00000039876	LOC681410	59	63.687	ENSORLG00015016302	HNRNPA0	57	64.407	Oryzias_latipes_hsok
ENSRNOG00000039876	LOC681410	68	52.941	ENSOMEG00000004838	hnrnpa3	64	48.372	Oryzias_melastigma
ENSRNOG00000039876	LOC681410	92	85.333	ENSOGAG00000025754	HNRNPA0	76	98.889	Otolemur_garnettii
ENSRNOG00000039876	LOC681410	90	89.744	ENSOARG00000015434	HNRNPA0	90	86.397	Ovis_aries
ENSRNOG00000039876	LOC681410	89	87.956	ENSPPAG00000005303	HNRNPA0	86	87.956	Pan_paniscus
ENSRNOG00000039876	LOC681410	89	87.226	ENSPPRG00000014655	HNRNPA0	88	88.321	Panthera_pardus
ENSRNOG00000039876	LOC681410	89	87.956	ENSPTRG00000017273	HNRNPA0	86	87.956	Pan_troglodytes
ENSRNOG00000039876	LOC681410	89	88.321	ENSPANG00000012900	HNRNPA0	87	85.766	Papio_anubis
ENSRNOG00000039876	LOC681410	60	72.527	ENSPKIG00000020270	HNRNPA0	63	72.778	Paramormyrops_kingsleyae
ENSRNOG00000039876	LOC681410	68	52.941	ENSPKIG00000022916	hnrnpa3	64	56.425	Paramormyrops_kingsleyae
ENSRNOG00000039876	LOC681410	60	72.222	ENSPKIG00000020281	-	53	72.472	Paramormyrops_kingsleyae
ENSRNOG00000039876	LOC681410	74	55.484	ENSPMGG00000000747	hnrnpa3	72	56.209	Periophthalmus_magnuspinnatus
ENSRNOG00000039876	LOC681410	89	81.413	ENSPEMG00000020274	Hnrnpa0	86	78.067	Peromyscus_maniculatus_bairdii
ENSRNOG00000039876	LOC681410	79	48.333	ENSPMAG00000004449	-	76	55.307	Petromyzon_marinus
ENSRNOG00000039876	LOC681410	65	69.591	ENSPMEG00000017025	HNRNPA0	98	69.591	Poecilia_mexicana
ENSRNOG00000039876	LOC681410	65	69.811	ENSPREG00000010619	HNRNPA0	76	69.375	Poecilia_reticulata
ENSRNOG00000039876	LOC681410	68	51.961	ENSPREG00000005411	hnrnpa3	59	55.307	Poecilia_reticulata
ENSRNOG00000039876	LOC681410	60	58.564	ENSPPYG00000001012	-	58	59.218	Pongo_abelii
ENSRNOG00000039876	LOC681410	89	50.667	ENSPPYG00000012967	-	71	61.875	Pongo_abelii
ENSRNOG00000039876	LOC681410	97	87.584	ENSPPYG00000015814	HNRNPA0	96	88.591	Pongo_abelii
ENSRNOG00000039876	LOC681410	82	58.824	ENSPNYG00000008424	hnrnpa3	74	57.143	Pundamilia_nyererei
ENSRNOG00000039876	LOC681410	89	87.956	ENSRBIG00000023673	HNRNPA0	88	87.956	Rhinopithecus_bieti
ENSRNOG00000039876	LOC681410	89	87.956	ENSRROG00000002558	HNRNPA0	88	87.956	Rhinopithecus_roxellana
ENSRNOG00000039876	LOC681410	59	56.442	ENSRROG00000034643	-	53	56.442	Rhinopithecus_roxellana
ENSRNOG00000039876	LOC681410	60	72.222	ENSSFOG00015002650	HNRNPA0	56	72.222	Scleropages_formosus
ENSRNOG00000039876	LOC681410	68	53.431	ENSSDUG00000000381	hnrnpa3	57	57.303	Seriola_dumerili
ENSRNOG00000039876	LOC681410	97	82.373	ENSSPUG00000016613	HNRNPA0	96	83.051	Sphenodon_punctatus
ENSRNOG00000039876	LOC681410	97	78.114	ENSTGUG00000001186	HNRNPA0	96	78.788	Taeniopygia_guttata
ENSRNOG00000039876	LOC681410	59	59.777	ENSTRUG00000021494	-	59	60.227	Takifugu_rubripes
ENSRNOG00000039876	LOC681410	60	55.000	ENSTRUG00000017504	hnrnpa3	89	45.973	Takifugu_rubripes
ENSRNOG00000039876	LOC681410	89	90.037	ENSTTRG00000000499	HNRNPA0	88	84.502	Tursiops_truncatus
ENSRNOG00000039876	LOC681410	89	87.410	ENSVVUG00000014736	HNRNPA0	95	87.000	Vulpes_vulpes
ENSRNOG00000039876	LOC681410	96	67.931	ENSXETG00000003833	hnrnpa0	57	82.123	Xenopus_tropicalis
ENSRNOG00000039876	LOC681410	64	70.414	ENSXMAG00000019804	HNRNPA0	95	70.414	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005654	nucleoplasm	-	IEA	Component
GO:0006954	inflammatory response	-	IEA	Process
GO:0017091	AU-rich element binding	-	IEA	Function
GO:0019901	protein kinase binding	-	IEA	Function
GO:0032496	response to lipopolysaccharide	-	IEA	Process
GO:0070935	3'-UTR-mediated mRNA stabilization	-	IEA	Process