EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000039949 (Gene tree)
Gene ID: 313063
Gene Symbol: Rad54b
Alias: Fsbp|LOC313063|RGD1306507
Full Name: RAD54 homolog B
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 67428 bases
Position: chr5:25146949-25214376
Accession: 1306507
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000058084	ResIII	PF04851.15	5.6e-10	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000061370	-	3288	XM_006237890	ENSRNOP00000058084	888 (aa)	XP_006237952	F1LYB7

Gene Model

Click here to download ENSRNOG00000039949's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03440	Homologous recombination	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000039949's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000039949	Rad54b	71	45.131	ENSRNOG00000013148	Rad54l	76	47.279

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000039949	Rad54b	81	80.801	ENSG00000265817	FSBP	99	80.801	Homo_sapiens
ENSRNOG00000039949	Rad54b	99	75.908	ENSG00000197275	RAD54B	99	75.908	Homo_sapiens
ENSRNOG00000039949	Rad54b	100	75.685	ENSAMEG00000005834	-	100	75.685	Ailuropoda_melanoleuca
ENSRNOG00000039949	Rad54b	99	55.184	ENSACIG00000013005	rad54b	99	55.184	Amphilophus_citrinellus
ENSRNOG00000039949	Rad54b	99	54.478	ENSAOCG00000008523	rad54b	99	54.478	Amphiprion_ocellaris
ENSRNOG00000039949	Rad54b	99	55.269	ENSAPEG00000001673	rad54b	99	55.269	Amphiprion_percula
ENSRNOG00000039949	Rad54b	99	55.580	ENSATEG00000001527	rad54b	99	55.580	Anabas_testudineus
ENSRNOG00000039949	Rad54b	99	66.013	ENSAPLG00000014366	-	99	66.013	Anas_platyrhynchos
ENSRNOG00000039949	Rad54b	90	67.618	ENSACAG00000003671	-	99	67.618	Anolis_carolinensis
ENSRNOG00000039949	Rad54b	73	79.630	ENSANAG00000019528	-	99	79.630	Aotus_nancymaae
ENSRNOG00000039949	Rad54b	99	55.556	ENSACLG00000007826	rad54b	99	55.556	Astatotilapia_calliptera
ENSRNOG00000039949	Rad54b	87	57.942	ENSAMXG00000039985	rad54b	94	57.683	Astyanax_mexicanus
ENSRNOG00000039949	Rad54b	100	73.875	ENSBTAG00000000632	RAD54B	100	73.875	Bos_taurus
ENSRNOG00000039949	Rad54b	82	33.818	WBGene00013792	Y116A8C.13	86	33.933	Caenorhabditis_elegans
ENSRNOG00000039949	Rad54b	99	74.807	ENSCJAG00000000080	-	99	79.420	Callithrix_jacchus
ENSRNOG00000039949	Rad54b	100	75.027	ENSCAFG00000009179	RAD54B	99	75.027	Canis_familiaris
ENSRNOG00000039949	Rad54b	100	74.808	ENSCAFG00020012084	-	99	74.808	Canis_lupus_dingo
ENSRNOG00000039949	Rad54b	100	73.765	ENSCHIG00000008230	-	100	73.765	Capra_hircus
ENSRNOG00000039949	Rad54b	100	76.974	ENSTSYG00000013234	-	100	76.974	Carlito_syrichta
ENSRNOG00000039949	Rad54b	100	75.916	ENSCPOG00000011643	-	99	75.916	Cavia_porcellus
ENSRNOG00000039949	Rad54b	99	75.028	ENSCCAG00000011754	-	99	79.586	Cebus_capucinus
ENSRNOG00000039949	Rad54b	99	76.211	ENSCATG00000030661	-	99	81.077	Cercocebus_atys
ENSRNOG00000039949	Rad54b	99	78.965	ENSCLAG00000010476	-	99	78.965	Chinchilla_lanigera
ENSRNOG00000039949	Rad54b	99	75.881	ENSCSAG00000012712	-	99	75.881	Chlorocebus_sabaeus
ENSRNOG00000039949	Rad54b	99	66.521	ENSCPBG00000003204	-	99	67.020	Chrysemys_picta_bellii
ENSRNOG00000039949	Rad54b	99	76.322	ENSCANG00000017939	-	99	81.354	Colobus_angolensis_palliatus
ENSRNOG00000039949	Rad54b	100	83.838	ENSCGRG00001020184	Rad54b	100	83.838	Cricetulus_griseus_chok1gshd
ENSRNOG00000039949	Rad54b	100	82.531	ENSCGRG00000016752	Rad54b	100	82.531	Cricetulus_griseus_crigri
ENSRNOG00000039949	Rad54b	99	55.518	ENSCSEG00000001601	rad54b	99	55.518	Cynoglossus_semilaevis
ENSRNOG00000039949	Rad54b	99	57.539	ENSCVAG00000009200	rad54b	99	57.539	Cyprinodon_variegatus
ENSRNOG00000039949	Rad54b	100	53.726	ENSDARG00000092134	rad54b	100	59.385	Danio_rerio
ENSRNOG00000039949	Rad54b	99	73.632	ENSDNOG00000015535	-	99	73.632	Dasypus_novemcinctus
ENSRNOG00000039949	Rad54b	100	76.067	ENSDORG00000002492	Rad54b	100	76.404	Dipodomys_ordii
ENSRNOG00000039949	Rad54b	86	72.449	ENSETEG00000010605	-	100	72.449	Echinops_telfairi
ENSRNOG00000039949	Rad54b	99	46.811	ENSEBUG00000009104	rad54b	99	46.811	Eptatretus_burgeri
ENSRNOG00000039949	Rad54b	97	74.376	ENSEASG00005004021	-	99	74.376	Equus_asinus_asinus
ENSRNOG00000039949	Rad54b	100	74.424	ENSECAG00000021949	-	95	78.765	Equus_caballus
ENSRNOG00000039949	Rad54b	80	78.261	ENSEEUG00000008056	-	79	78.261	Erinaceus_europaeus
ENSRNOG00000039949	Rad54b	88	57.396	ENSELUG00000009287	rad54b	99	52.345	Esox_lucius
ENSRNOG00000039949	Rad54b	100	75.794	ENSFCAG00000015513	-	100	80.880	Felis_catus
ENSRNOG00000039949	Rad54b	99	65.098	ENSFALG00000005467	-	99	65.098	Ficedula_albicollis
ENSRNOG00000039949	Rad54b	99	76.432	ENSFDAG00000020541	-	99	76.432	Fukomys_damarensis
ENSRNOG00000039949	Rad54b	88	58.794	ENSFHEG00000014382	rad54b	87	58.794	Fundulus_heteroclitus
ENSRNOG00000039949	Rad54b	88	56.946	ENSGMOG00000014774	rad54b	98	56.946	Gadus_morhua
ENSRNOG00000039949	Rad54b	99	65.939	ENSGALG00000043597	RAD54B	99	65.939	Gallus_gallus
ENSRNOG00000039949	Rad54b	99	55.211	ENSGAFG00000007901	rad54b	99	55.333	Gambusia_affinis
ENSRNOG00000039949	Rad54b	99	53.506	ENSGACG00000009128	rad54b	100	53.326	Gasterosteus_aculeatus
ENSRNOG00000039949	Rad54b	100	66.522	ENSGAGG00000018747	-	99	66.522	Gopherus_agassizii
ENSRNOG00000039949	Rad54b	100	75.631	ENSGGOG00000023516	-	100	75.631	Gorilla_gorilla
ENSRNOG00000039949	Rad54b	99	53.617	ENSHBUG00000016017	rad54b	99	53.617	Haplochromis_burtoni
ENSRNOG00000039949	Rad54b	100	75.682	ENSHGLG00000008263	RAD54B	99	75.682	Heterocephalus_glaber_female
ENSRNOG00000039949	Rad54b	100	74.865	ENSHGLG00100008108	-	99	74.865	Heterocephalus_glaber_male
ENSRNOG00000039949	Rad54b	99	53.583	ENSHCOG00000004764	rad54b	100	53.583	Hippocampus_comes
ENSRNOG00000039949	Rad54b	100	52.587	ENSIPUG00000018531	rad54b	99	52.482	Ictalurus_punctatus
ENSRNOG00000039949	Rad54b	99	75.250	ENSSTOG00000010791	-	99	75.250	Ictidomys_tridecemlineatus
ENSRNOG00000039949	Rad54b	100	76.839	ENSJJAG00000010314	Rad54b	100	76.839	Jaculus_jaculus
ENSRNOG00000039949	Rad54b	99	54.087	ENSKMAG00000004744	rad54b	99	54.087	Kryptolebias_marmoratus
ENSRNOG00000039949	Rad54b	83	67.420	ENSLACG00000000859	-	100	67.420	Latimeria_chalumnae
ENSRNOG00000039949	Rad54b	99	57.066	ENSLOCG00000010100	rad54b	96	61.858	Lepisosteus_oculatus
ENSRNOG00000039949	Rad54b	91	78.245	ENSLAFG00000015315	-	100	78.245	Loxodonta_africana
ENSRNOG00000039949	Rad54b	99	76.101	ENSMFAG00000031629	-	99	80.939	Macaca_fascicularis
ENSRNOG00000039949	Rad54b	99	76.101	ENSMMUG00000005659	-	99	76.101	Macaca_mulatta
ENSRNOG00000039949	Rad54b	99	76.185	ENSMNEG00000016408	-	99	76.185	Macaca_nemestrina
ENSRNOG00000039949	Rad54b	99	76.101	ENSMLEG00000006946	-	99	76.101	Mandrillus_leucophaeus
ENSRNOG00000039949	Rad54b	99	55.531	ENSMAMG00000012269	rad54b	99	55.531	Mastacembelus_armatus
ENSRNOG00000039949	Rad54b	99	53.830	ENSMZEG00005005281	rad54b	95	59.142	Maylandia_zebra
ENSRNOG00000039949	Rad54b	99	65.317	ENSMGAG00000012024	-	99	65.317	Meleagris_gallopavo
ENSRNOG00000039949	Rad54b	100	82.716	ENSMAUG00000013586	Rad54b	100	82.716	Mesocricetus_auratus
ENSRNOG00000039949	Rad54b	99	76.180	ENSMICG00000000754	-	99	76.180	Microcebus_murinus
ENSRNOG00000039949	Rad54b	100	83.389	ENSMOCG00000020035	Rad54b	99	83.389	Microtus_ochrogaster
ENSRNOG00000039949	Rad54b	99	54.153	ENSMMOG00000003394	rad54b	99	54.153	Mola_mola
ENSRNOG00000039949	Rad54b	91	73.449	ENSMODG00000007343	-	99	73.449	Monodelphis_domestica
ENSRNOG00000039949	Rad54b	72	59.472	ENSMALG00000001520	rad54b	99	59.472	Monopterus_albus
ENSRNOG00000039949	Rad54b	100	89.089	MGP_CAROLIEiJ_G0025810	Rad54b	100	89.089	Mus_caroli
ENSRNOG00000039949	Rad54b	100	88.189	ENSMUSG00000078773	Rad54b	100	88.189	Mus_musculus
ENSRNOG00000039949	Rad54b	100	88.526	MGP_PahariEiJ_G0023933	Rad54b	100	88.526	Mus_pahari
ENSRNOG00000039949	Rad54b	100	88.639	MGP_SPRETEiJ_G0026758	Rad54b	100	88.639	Mus_spretus
ENSRNOG00000039949	Rad54b	91	79.136	ENSMPUG00000008878	-	100	79.136	Mustela_putorius_furo
ENSRNOG00000039949	Rad54b	99	73.355	ENSMLUG00000008953	-	99	73.355	Myotis_lucifugus
ENSRNOG00000039949	Rad54b	100	80.931	ENSNGAG00000017537	Rad54b	100	80.931	Nannospalax_galili
ENSRNOG00000039949	Rad54b	99	55.072	ENSNBRG00000013394	rad54b	99	55.072	Neolamprologus_brichardi
ENSRNOG00000039949	Rad54b	99	75.881	ENSNLEG00000003062	-	99	80.525	Nomascus_leucogenys
ENSRNOG00000039949	Rad54b	73	70.732	ENSMEUG00000012426	-	71	70.732	Notamacropus_eugenii
ENSRNOG00000039949	Rad54b	100	75.332	ENSODEG00000019564	-	100	75.332	Octodon_degus
ENSRNOG00000039949	Rad54b	91	73.573	ENSODEG00000002650	-	96	79.846	Octodon_degus
ENSRNOG00000039949	Rad54b	99	54.625	ENSONIG00000006067	rad54b	99	54.329	Oreochromis_niloticus
ENSRNOG00000039949	Rad54b	84	71.353	ENSOANG00000011348	-	100	71.353	Ornithorhynchus_anatinus
ENSRNOG00000039949	Rad54b	100	75.851	ENSOCUG00000016478	-	99	75.851	Oryctolagus_cuniculus
ENSRNOG00000039949	Rad54b	99	54.234	ENSORLG00000008918	rad54b	99	61.801	Oryzias_latipes
ENSRNOG00000039949	Rad54b	72	61.801	ENSORLG00020012171	rad54b	99	61.801	Oryzias_latipes_hni
ENSRNOG00000039949	Rad54b	88	59.747	ENSORLG00015018536	rad54b	84	59.747	Oryzias_latipes_hsok
ENSRNOG00000039949	Rad54b	86	58.839	ENSOMEG00000004345	rad54b	99	58.839	Oryzias_melastigma
ENSRNOG00000039949	Rad54b	99	74.973	ENSOGAG00000007854	-	99	74.973	Otolemur_garnettii
ENSRNOG00000039949	Rad54b	91	78.844	ENSOARG00000007691	-	100	78.844	Ovis_aries
ENSRNOG00000039949	Rad54b	99	74.449	ENSPPAG00000029572	-	99	74.449	Pan_paniscus
ENSRNOG00000039949	Rad54b	100	75.904	ENSPPRG00000007571	-	100	80.880	Panthera_pardus
ENSRNOG00000039949	Rad54b	82	80.880	ENSPTIG00000012670	-	100	80.880	Panthera_tigris_altaica
ENSRNOG00000039949	Rad54b	99	75.881	ENSPTRG00000020427	-	99	80.801	Pan_troglodytes
ENSRNOG00000039949	Rad54b	99	76.211	ENSPANG00000019566	-	99	76.211	Papio_anubis
ENSRNOG00000039949	Rad54b	99	57.018	ENSPKIG00000014974	rad54b	99	57.018	Paramormyrops_kingsleyae
ENSRNOG00000039949	Rad54b	99	64.122	ENSPSIG00000002383	-	98	68.618	Pelodiscus_sinensis
ENSRNOG00000039949	Rad54b	100	83.502	ENSPEMG00000012133	Rad54b	100	83.502	Peromyscus_maniculatus_bairdii
ENSRNOG00000039949	Rad54b	88	57.161	ENSPMAG00000002916	rad54b	98	57.286	Petromyzon_marinus
ENSRNOG00000039949	Rad54b	90	73.350	ENSPCIG00000020151	-	94	73.010	Phascolarctos_cinereus
ENSRNOG00000039949	Rad54b	99	54.593	ENSPFOG00000023411	rad54b	99	54.593	Poecilia_formosa
ENSRNOG00000039949	Rad54b	99	54.805	ENSPLAG00000010430	rad54b	99	54.805	Poecilia_latipinna
ENSRNOG00000039949	Rad54b	99	55.395	ENSPMEG00000016873	rad54b	99	55.395	Poecilia_mexicana
ENSRNOG00000039949	Rad54b	99	56.715	ENSPREG00000018443	rad54b	99	56.715	Poecilia_reticulata
ENSRNOG00000039949	Rad54b	99	75.441	ENSPPYG00000018750	-	99	75.441	Pongo_abelii
ENSRNOG00000039949	Rad54b	99	76.948	ENSPCOG00000026845	-	99	81.956	Propithecus_coquereli
ENSRNOG00000039949	Rad54b	83	79.515	ENSPVAG00000000261	-	86	79.515	Pteropus_vampyrus
ENSRNOG00000039949	Rad54b	88	58.365	ENSPNYG00000018303	rad54b	96	58.365	Pundamilia_nyererei
ENSRNOG00000039949	Rad54b	99	53.980	ENSPNAG00000000295	rad54b	99	53.762	Pygocentrus_nattereri
ENSRNOG00000039949	Rad54b	99	75.881	ENSRBIG00000020419	-	99	75.881	Rhinopithecus_bieti
ENSRNOG00000039949	Rad54b	99	75.881	ENSRROG00000039897	-	99	75.881	Rhinopithecus_roxellana
ENSRNOG00000039949	Rad54b	80	36.294	YBR073W	RDH54	78	36.294	Saccharomyces_cerevisiae
ENSRNOG00000039949	Rad54b	99	74.424	ENSSBOG00000028501	-	99	74.424	Saimiri_boliviensis_boliviensis
ENSRNOG00000039949	Rad54b	99	68.750	ENSSHAG00000017038	-	99	68.750	Sarcophilus_harrisii
ENSRNOG00000039949	Rad54b	64	64.561	ENSSFOG00015008483	rad54b	88	64.561	Scleropages_formosus
ENSRNOG00000039949	Rad54b	99	54.770	ENSSMAG00000018659	rad54b	99	54.871	Scophthalmus_maximus
ENSRNOG00000039949	Rad54b	97	53.879	ENSSDUG00000001122	rad54b	97	53.987	Seriola_dumerili
ENSRNOG00000039949	Rad54b	99	53.757	ENSSLDG00000013787	rad54b	99	53.862	Seriola_lalandi_dorsalis
ENSRNOG00000039949	Rad54b	99	65.657	ENSSPUG00000016497	-	99	65.657	Sphenodon_punctatus
ENSRNOG00000039949	Rad54b	99	55.703	ENSSPAG00000012800	rad54b	99	55.703	Stegastes_partitus
ENSRNOG00000039949	Rad54b	99	75.166	ENSSSCG00000006101	-	99	80.075	Sus_scrofa
ENSRNOG00000039949	Rad54b	99	64.442	ENSTGUG00000011880	-	99	64.442	Taeniopygia_guttata
ENSRNOG00000039949	Rad54b	88	59.166	ENSTRUG00000010015	rad54b	99	53.102	Takifugu_rubripes
ENSRNOG00000039949	Rad54b	100	71.240	ENSTTRG00000006312	-	100	71.240	Tursiops_truncatus
ENSRNOG00000039949	Rad54b	100	75.246	ENSUMAG00000016401	-	100	75.246	Ursus_maritimus
ENSRNOG00000039949	Rad54b	100	74.037	ENSVPAG00000003157	-	100	74.037	Vicugna_pacos
ENSRNOG00000039949	Rad54b	99	53.184	ENSXETG00000025924	rad54b	99	56.713	Xenopus_tropicalis
ENSRNOG00000039949	Rad54b	99	55.925	ENSXMAG00000013141	rad54b	99	56.049	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000724	double-strand break repair via homologous recombination	-	IEA	Process
GO:0000724	double-strand break repair via homologous recombination	-	ISO	Process
GO:0003674	molecular_function	-	ND	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	20531236.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0006974	cellular response to DNA damage stimulus	-	ISO	Process
GO:0008150	biological_process	-	ND	Process
GO:0008340	determination of adult lifespan	-	IEA	Process
GO:0008340	determination of adult lifespan	-	ISO	Process
GO:0010212	response to ionizing radiation	-	IEA	Process
GO:0010212	response to ionizing radiation	-	ISO	Process
GO:0015616	DNA translocase activity	-	ISO	Function
GO:0042493	response to drug	-	IEA	Process
GO:0042493	response to drug	-	ISO	Process
GO:0042802	identical protein binding	-	ISO	Function