EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000040045 (Gene tree)
Gene ID
100910202
Gene Symbol
Crnkl1
Alias
Crn|LOC100360434|LOC100910202|MGC93283
Full Name
crooked neck pre-mRNA splicing factor 1
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Minus strand
Length
2370 bases
Position
chr6:18349167-18351536
Accession
620507
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000073513HATPF02184.161e-3712
ENSRNOP00000073513HATPF02184.161e-3722
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000061588-2370-ENSRNOP00000073513690 (aa)-A0A0G2K5Q2
Gene Model
Click here to download ENSRNOG00000040045's gene model file
Pathways
Pathway IDPathway NameSource
rno03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000040045's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSRNOG00000040045Crnkl110099.565ENSRNOG00000010587Crnkl110099.565
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000040045Crnkl19995.924ENSG00000101343CRNKL110095.924Homo_sapiens
ENSRNOG00000040045Crnkl19986.006ENSAPOG00000009705crnkl19785.926Acanthochromis_polyacanthus
ENSRNOG00000040045Crnkl19998.253ENSAMEG00000000270CRNKL18398.253Ailuropoda_melanoleuca
ENSRNOG00000040045Crnkl19886.053ENSACIG00000015267crnkl18986.053Amphilophus_citrinellus
ENSRNOG00000040045Crnkl19986.152ENSAOCG00000021964crnkl19186.152Amphiprion_ocellaris
ENSRNOG00000040045Crnkl19985.881ENSAPEG00000015041crnkl19185.881Amphiprion_percula
ENSRNOG00000040045Crnkl19985.174ENSATEG00000001068crnkl18986.029Anabas_testudineus
ENSRNOG00000040045Crnkl19989.956ENSAPLG00000013105CRNKL19989.956Anas_platyrhynchos
ENSRNOG00000040045Crnkl19992.387ENSACAG00000005284CRNKL19992.387Anolis_carolinensis
ENSRNOG00000040045Crnkl19296.519ENSANAG00000024889CRNKL110096.519Aotus_nancymaae
ENSRNOG00000040045Crnkl19986.026ENSACLG00000010813crnkl19186.026Astatotilapia_calliptera
ENSRNOG00000040045Crnkl19687.349ENSAMXG00000018334crnkl19385.298Astyanax_mexicanus
ENSRNOG00000040045Crnkl19996.512ENSBTAG00000008472CRNKL19996.512Bos_taurus
ENSRNOG00000040045Crnkl19361.586WBGene00019762M03F8.39360.432Caenorhabditis_elegans
ENSRNOG00000040045Crnkl19995.779ENSCJAG00000005393CRNKL110095.779Callithrix_jacchus
ENSRNOG00000040045Crnkl19998.108ENSCAFG00000005333CRNKL19498.108Canis_familiaris
ENSRNOG00000040045Crnkl19998.108ENSCAFG00020027488CRNKL110098.108Canis_lupus_dingo
ENSRNOG00000040045Crnkl19995.785ENSCHIG00000013171CRNKL19995.785Capra_hircus
ENSRNOG00000040045Crnkl19996.798ENSTSYG00000004197CRNKL110096.798Carlito_syrichta
ENSRNOG00000040045Crnkl19596.290ENSCAPG00000010501CRNKL19996.290Cavia_aperea
ENSRNOG00000040045Crnkl19996.507ENSCPOG00000004418CRNKL110096.507Cavia_porcellus
ENSRNOG00000040045Crnkl19995.779ENSCCAG00000027037CRNKL110095.779Cebus_capucinus
ENSRNOG00000040045Crnkl19995.924ENSCATG00000034247CRNKL110095.924Cercocebus_atys
ENSRNOG00000040045Crnkl19997.234ENSCLAG00000013859CRNKL110097.234Chinchilla_lanigera
ENSRNOG00000040045Crnkl19995.924ENSCSAG00000011434CRNKL110095.924Chlorocebus_sabaeus
ENSRNOG00000040045Crnkl19997.380ENSCHOG00000006371CRNKL18497.380Choloepus_hoffmanni
ENSRNOG00000040045Crnkl19993.723ENSCPBG00000023501CRNKL19993.723Chrysemys_picta_bellii
ENSRNOG00000040045Crnkl19669.033ENSCING00000002709-9967.398Ciona_intestinalis
ENSRNOG00000040045Crnkl19996.070ENSCANG00000038789CRNKL110096.070Colobus_angolensis_palliatus
ENSRNOG00000040045Crnkl110098.696ENSCGRG00001001115-10098.696Cricetulus_griseus_chok1gshd
ENSRNOG00000040045Crnkl110098.696ENSCGRG00001000687-10098.696Cricetulus_griseus_chok1gshd
ENSRNOG00000040045Crnkl110098.696ENSCGRG00000007854Crnkl110098.696Cricetulus_griseus_crigri
ENSRNOG00000040045Crnkl19885.778ENSCSEG00000005594crnkl18784.716Cynoglossus_semilaevis
ENSRNOG00000040045Crnkl19787.087ENSCVAG00000015172crnkl19285.153Cyprinodon_variegatus
ENSRNOG00000040045Crnkl19686.556ENSDARG00000007901crnkl19085.234Danio_rerio
ENSRNOG00000040045Crnkl19997.807ENSDNOG00000016226CRNKL19597.807Dasypus_novemcinctus
ENSRNOG00000040045Crnkl19996.392ENSDORG00000000394-10096.392Dipodomys_ordii
ENSRNOG00000040045Crnkl19788.060ENSDORG00000030174-9988.060Dipodomys_ordii
ENSRNOG00000040045Crnkl19788.657ENSDORG00000023724-9988.657Dipodomys_ordii
ENSRNOG00000040045Crnkl19668.769FBgn0000377crn9568.769Drosophila_melanogaster
ENSRNOG00000040045Crnkl19984.862ENSETEG00000003711CRNKL18484.862Echinops_telfairi
ENSRNOG00000040045Crnkl19961.155ENSEBUG00000013461crnkl19658.419Eptatretus_burgeri
ENSRNOG00000040045Crnkl19997.962ENSEASG00005002072CRNKL110097.962Equus_asinus_asinus
ENSRNOG00000040045Crnkl19997.962ENSECAG00000022215CRNKL110097.962Equus_caballus
ENSRNOG00000040045Crnkl19994.706ENSEEUG00000000413CRNKL19294.760Erinaceus_europaeus
ENSRNOG00000040045Crnkl19785.329ENSELUG00000015424crnkl19783.918Esox_lucius
ENSRNOG00000040045Crnkl19998.253ENSFCAG00000000714CRNKL110098.253Felis_catus
ENSRNOG00000040045Crnkl19791.220ENSFALG00000004611CRNKL110091.220Ficedula_albicollis
ENSRNOG00000040045Crnkl19997.234ENSFDAG00000000604CRNKL110097.234Fukomys_damarensis
ENSRNOG00000040045Crnkl19886.181ENSFHEG00000013163crnkl19084.928Fundulus_heteroclitus
ENSRNOG00000040045Crnkl19785.479ENSGMOG00000007609crnkl19483.697Gadus_morhua
ENSRNOG00000040045Crnkl19992.993ENSGALG00000008429CRNKL19992.993Gallus_gallus
ENSRNOG00000040045Crnkl19786.637ENSGAFG00000014249crnkl19084.964Gambusia_affinis
ENSRNOG00000040045Crnkl19984.649ENSGACG00000011852crnkl19184.649Gasterosteus_aculeatus
ENSRNOG00000040045Crnkl19592.530ENSGAGG00000021233CRNKL110092.553Gopherus_agassizii
ENSRNOG00000040045Crnkl19995.924ENSGGOG00000014176CRNKL110095.924Gorilla_gorilla
ENSRNOG00000040045Crnkl19985.881ENSHBUG00000005246crnkl19185.881Haplochromis_burtoni
ENSRNOG00000040045Crnkl19997.089ENSHGLG00000010856CRNKL110097.089Heterocephalus_glaber_female
ENSRNOG00000040045Crnkl19997.089ENSHGLG00100011521CRNKL110097.089Heterocephalus_glaber_male
ENSRNOG00000040045Crnkl19784.258ENSHCOG00000006420crnkl19982.387Hippocampus_comes
ENSRNOG00000040045Crnkl19487.211ENSIPUG00000006751crnkl19385.373Ictalurus_punctatus
ENSRNOG00000040045Crnkl19675.639ENSIPUG00000006836-9974.852Ictalurus_punctatus
ENSRNOG00000040045Crnkl19268.603ENSIPUG00000000315-10069.811Ictalurus_punctatus
ENSRNOG00000040045Crnkl19998.253ENSSTOG00000014747CRNKL110098.253Ictidomys_tridecemlineatus
ENSRNOG00000040045Crnkl19996.302ENSJJAG00000016926Crnkl110096.302Jaculus_jaculus
ENSRNOG00000040045Crnkl19985.569ENSKMAG00000003620crnkl18785.569Kryptolebias_marmoratus
ENSRNOG00000040045Crnkl19770.431ENSLBEG00000003543crnkl19272.661Labrus_bergylta
ENSRNOG00000040045Crnkl19987.701ENSLACG00000001129CRNKL19987.701Latimeria_chalumnae
ENSRNOG00000040045Crnkl19688.855ENSLOCG00000016889crnkl19587.427Lepisosteus_oculatus
ENSRNOG00000040045Crnkl19997.529ENSLAFG00000004512CRNKL110097.529Loxodonta_africana
ENSRNOG00000040045Crnkl19995.924ENSMFAG00000039893CRNKL110095.924Macaca_fascicularis
ENSRNOG00000040045Crnkl19995.924ENSMMUG00000007709CRNKL110095.924Macaca_mulatta
ENSRNOG00000040045Crnkl19995.924ENSMNEG00000037490CRNKL110095.924Macaca_nemestrina
ENSRNOG00000040045Crnkl19995.924ENSMLEG00000034885CRNKL110095.924Mandrillus_leucophaeus
ENSRNOG00000040045Crnkl19985.444ENSMAMG00000008757crnkl19185.444Mastacembelus_armatus
ENSRNOG00000040045Crnkl19986.026ENSMZEG00005022345crnkl19186.026Maylandia_zebra
ENSRNOG00000040045Crnkl19992.274ENSMGAG00000003452CRNKL19492.274Meleagris_gallopavo
ENSRNOG00000040045Crnkl110098.551ENSMAUG00000020764Crnkl110098.551Mesocricetus_auratus
ENSRNOG00000040045Crnkl19997.234ENSMICG00000006048CRNKL110097.234Microcebus_murinus
ENSRNOG00000040045Crnkl110090.598ENSMOCG00000000681-10090.598Microtus_ochrogaster
ENSRNOG00000040045Crnkl19670.270ENSMOCG00000004179-9869.175Microtus_ochrogaster
ENSRNOG00000040045Crnkl19185.103ENSMMOG00000017601crnkl19785.103Mola_mola
ENSRNOG00000040045Crnkl19991.667ENSMODG00000005961-9991.667Monodelphis_domestica
ENSRNOG00000040045Crnkl110085.652ENSMODG00000010857-10085.652Monodelphis_domestica
ENSRNOG00000040045Crnkl19960.637ENSMALG00000011211crnkl19062.428Monopterus_albus
ENSRNOG00000040045Crnkl110099.420MGP_CAROLIEiJ_G0024394Crnkl110099.420Mus_caroli
ENSRNOG00000040045Crnkl110099.565ENSMUSG00000001767Crnkl110099.565Mus_musculus
ENSRNOG00000040045Crnkl110097.536MGP_PahariEiJ_G0025838Crnkl110097.536Mus_pahari
ENSRNOG00000040045Crnkl110099.420MGP_SPRETEiJ_G0025312Crnkl110099.420Mus_spretus
ENSRNOG00000040045Crnkl19998.108ENSMPUG00000001226CRNKL110098.108Mustela_putorius_furo
ENSRNOG00000040045Crnkl19997.384ENSMLUG00000016513CRNKL18997.384Myotis_lucifugus
ENSRNOG00000040045Crnkl19995.857ENSNGAG00000023097Crnkl110095.857Nannospalax_galili
ENSRNOG00000040045Crnkl19986.172ENSNBRG00000007867crnkl19186.172Neolamprologus_brichardi
ENSRNOG00000040045Crnkl19992.431ENSNLEG00000009862CRNKL110092.431Nomascus_leucogenys
ENSRNOG00000040045Crnkl19985.756ENSMEUG00000002361-9985.756Notamacropus_eugenii
ENSRNOG00000040045Crnkl19794.776ENSMEUG00000012167-10094.776Notamacropus_eugenii
ENSRNOG00000040045Crnkl18667.761ENSOPRG00000009242-6167.761Ochotona_princeps
ENSRNOG00000040045Crnkl19997.089ENSODEG00000012175CRNKL110097.089Octodon_degus
ENSRNOG00000040045Crnkl19986.317ENSONIG00000018728crnkl19186.317Oreochromis_niloticus
ENSRNOG00000040045Crnkl19997.959ENSOCUG00000015484CRNKL18397.959Oryctolagus_cuniculus
ENSRNOG00000040045Crnkl19785.435ENSORLG00000017240crnkl19679.539Oryzias_latipes
ENSRNOG00000040045Crnkl19785.586ENSORLG00020001742crnkl18985.586Oryzias_latipes_hni
ENSRNOG00000040045Crnkl19785.586ENSORLG00015019564crnkl18985.586Oryzias_latipes_hsok
ENSRNOG00000040045Crnkl19984.526ENSOMEG00000019895crnkl19184.526Oryzias_melastigma
ENSRNOG00000040045Crnkl19996.215ENSOGAG00000011544CRNKL110096.215Otolemur_garnettii
ENSRNOG00000040045Crnkl19996.802ENSOARG00000002150CRNKL19096.802Ovis_aries
ENSRNOG00000040045Crnkl19994.706ENSPPAG00000027847CRNKL18394.760Pan_paniscus
ENSRNOG00000040045Crnkl19998.253ENSPPRG00000001955CRNKL110098.253Panthera_pardus
ENSRNOG00000040045Crnkl19998.253ENSPTIG00000007393CRNKL110098.253Panthera_tigris_altaica
ENSRNOG00000040045Crnkl19995.779ENSPTRG00000030609CRNKL110095.779Pan_troglodytes
ENSRNOG00000040045Crnkl19995.924ENSPANG00000017420CRNKL110095.924Papio_anubis
ENSRNOG00000040045Crnkl19682.857ENSPKIG00000017093crnkl18982.111Paramormyrops_kingsleyae
ENSRNOG00000040045Crnkl19992.533ENSPSIG00000012705CRNKL19992.533Pelodiscus_sinensis
ENSRNOG00000040045Crnkl19879.472ENSPMGG00000006263crnkl19679.087Periophthalmus_magnuspinnatus
ENSRNOG00000040045Crnkl110098.696ENSPEMG00000000073-9998.696Peromyscus_maniculatus_bairdii
ENSRNOG00000040045Crnkl19981.739ENSPMAG00000002250crnkl19981.739Petromyzon_marinus
ENSRNOG00000040045Crnkl19994.178ENSPCIG00000025825CRNKL19694.178Phascolarctos_cinereus
ENSRNOG00000040045Crnkl19786.486ENSPFOG00000005102crnkl19384.493Poecilia_formosa
ENSRNOG00000040045Crnkl19786.486ENSPLAG00000007288crnkl19084.370Poecilia_latipinna
ENSRNOG00000040045Crnkl19786.637ENSPMEG00000008865crnkl19484.638Poecilia_mexicana
ENSRNOG00000040045Crnkl19786.186ENSPREG00000012615crnkl19284.134Poecilia_reticulata
ENSRNOG00000040045Crnkl19995.882ENSPPYG00000010747CRNKL18195.924Pongo_abelii
ENSRNOG00000040045Crnkl19991.618ENSPCAG00000003296CRNKL18591.703Procavia_capensis
ENSRNOG00000040045Crnkl19995.882ENSPCOG00000017608CRNKL18395.924Propithecus_coquereli
ENSRNOG00000040045Crnkl19997.525ENSPVAG00000006207CRNKL18397.525Pteropus_vampyrus
ENSRNOG00000040045Crnkl19985.881ENSPNYG00000001977crnkl19185.881Pundamilia_nyererei
ENSRNOG00000040045Crnkl19788.209ENSPNAG00000001507crnkl19883.430Pygocentrus_nattereri
ENSRNOG00000040045Crnkl19995.779ENSRBIG00000031770CRNKL110095.779Rhinopithecus_bieti
ENSRNOG00000040045Crnkl19995.633ENSRROG00000040450CRNKL110095.633Rhinopithecus_roxellana
ENSRNOG00000040045Crnkl19437.536YLR117CCLF19937.627Saccharomyces_cerevisiae
ENSRNOG00000040045Crnkl19995.779ENSSBOG00000029672CRNKL110095.779Saimiri_boliviensis_boliviensis
ENSRNOG00000040045Crnkl19574.052ENSSHAG00000011199CRNKL19974.052Sarcophilus_harrisii
ENSRNOG00000040045Crnkl19687.613ENSSFOG00015000946crnkl18985.965Scleropages_formosus
ENSRNOG00000040045Crnkl19786.248ENSSMAG00000007933crnkl18786.248Scophthalmus_maximus
ENSRNOG00000040045Crnkl19979.185ENSSDUG00000012625crnkl18779.971Seriola_dumerili
ENSRNOG00000040045Crnkl19985.714ENSSLDG00000021413crnkl18985.714Seriola_lalandi_dorsalis
ENSRNOG00000040045Crnkl19996.798ENSSARG00000006443CRNKL18296.798Sorex_araneus
ENSRNOG00000040045Crnkl19992.826ENSSPUG00000005254CRNKL19992.826Sphenodon_punctatus
ENSRNOG00000040045Crnkl19985.486ENSSPAG00000016150crnkl18985.486Stegastes_partitus
ENSRNOG00000040045Crnkl19997.820ENSSSCG00000038587CRNKL19997.820Sus_scrofa
ENSRNOG00000040045Crnkl19991.691ENSTGUG00000007645CRNKL19891.691Taeniopygia_guttata
ENSRNOG00000040045Crnkl19780.689ENSTRUG00000015417crnkl19079.823Takifugu_rubripes
ENSRNOG00000040045Crnkl19784.858ENSTNIG00000010710crnkl19983.528Tetraodon_nigroviridis
ENSRNOG00000040045Crnkl19196.000ENSTBEG00000001304CRNKL18296.044Tupaia_belangeri
ENSRNOG00000040045Crnkl19193.440ENSTTRG00000000484CRNKL18193.513Tursiops_truncatus
ENSRNOG00000040045Crnkl19998.253ENSUAMG00000018586CRNKL110098.253Ursus_americanus
ENSRNOG00000040045Crnkl19998.253ENSUMAG00000024957CRNKL110098.253Ursus_maritimus
ENSRNOG00000040045Crnkl19998.108ENSVVUG00000012559CRNKL18298.108Vulpes_vulpes
ENSRNOG00000040045Crnkl19990.539ENSXETG00000009698crnkl19990.539Xenopus_tropicalis
ENSRNOG00000040045Crnkl19785.757ENSXCOG00000000824crnkl19184.041Xiphophorus_couchianus
ENSRNOG00000040045Crnkl19786.637ENSXMAG00000006896crnkl19184.897Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000245spliceosomal complex assembly21873635.IBAProcess
GO:0000245spliceosomal complex assembly-ISOProcess
GO:0000245spliceosomal complex assembly-ISSProcess
GO:0000398mRNA splicing, via spliceosome21873635.IBAProcess
GO:0000398mRNA splicing, via spliceosome-ISOProcess
GO:0000398mRNA splicing, via spliceosome-ISSProcess
GO:0000974Prp19 complex21873635.IBAComponent
GO:0003674molecular_function-NDFunction
GO:0003723RNA binding-ISOFunction
GO:0003723RNA binding-ISSFunction
GO:0005575cellular_component-NDComponent
GO:0005634nucleus-ISOComponent
GO:0005634nucleus-ISSComponent
GO:0005681spliceosomal complex-ISOComponent
GO:0005681spliceosomal complex-ISSComponent
GO:0006396RNA processing-IEAProcess
GO:0016607nuclear speck-IEAComponent
GO:0021987cerebral cortex development12801913.IEPProcess
GO:0071007U2-type catalytic step 2 spliceosome21873635.IBAComponent
GO:0071007U2-type catalytic step 2 spliceosome-ISOComponent
GO:0071007U2-type catalytic step 2 spliceosome-ISSComponent
GO:0071013catalytic step 2 spliceosome21873635.IBAComponent
GO:0071013catalytic step 2 spliceosome-ISOComponent
GO:0071014post-mRNA release spliceosomal complex21873635.IBAComponent
GO:1990416cellular response to brain-derived neurotrophic factor stimulus12801913.IEPProcess
GO:1990830cellular response to leukemia inhibitory factor12801913.IEPProcess

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