EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000042195 (Gene tree)
Gene ID
116697
Gene Symbol
Pabpn1
Alias
-
Full Name
poly(A) binding protein%2C nuclear 1
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Plus strand
Length
4603 bases
Position
chr15:33555640-33560242
Accession
619928
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000021096RRM_1PF00076.227.7e-1511
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000021096-1779XM_008770659ENSRNOP00000021096302 (aa)XP_008768881G3V7Z8
Gene Model
Click here to download ENSRNOG00000042195's gene model file
Pathways
Pathway IDPathway NameSource
rno03015mRNA surveillance pathwayKEGG
rno05164Influenza AKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000042195's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSRNOG00000042195Pabpn17345.339ENSRNOG00000029558Pabpn1l5259.184
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000042195Pabpn17090.141ENSG00000258643BCL2L2-PABPN16490.141Homo_sapiens
ENSRNOG00000042195Pabpn110097.059ENSG00000100836PABPN110098.876Homo_sapiens
ENSRNOG00000042195Pabpn18570.229ENSAPOG00000016425pabpn18681.553Acanthochromis_polyacanthus
ENSRNOG00000042195Pabpn16398.942ENSAMEG00000007048BCL2L2-PABPN110098.942Ailuropoda_melanoleuca
ENSRNOG00000042195Pabpn18467.050ENSACIG00000021744pabpn19481.548Amphilophus_citrinellus
ENSRNOG00000042195Pabpn18570.229ENSAOCG00000015805pabpn18681.553Amphiprion_ocellaris
ENSRNOG00000042195Pabpn18570.229ENSAPEG00000009623pabpn18681.553Amphiprion_percula
ENSRNOG00000042195Pabpn18570.611ENSATEG00000020531pabpn18682.039Anabas_testudineus
ENSRNOG00000042195Pabpn16590.816ENSACAG00000006185-7487.560Anolis_carolinensis
ENSRNOG00000042195Pabpn110089.735ENSANAG00000024513-10089.735Aotus_nancymaae
ENSRNOG00000042195Pabpn18466.794ENSACLG00000016374pabpn16680.402Astatotilapia_calliptera
ENSRNOG00000042195Pabpn18571.756ENSAMXG00000000452pabpn19483.333Astyanax_mexicanus
ENSRNOG00000042195Pabpn16587.245ENSBTAG00000050594-8977.256Bos_taurus
ENSRNOG00000042195Pabpn110096.405ENSBTAG00000006884PABPN110096.405Bos_taurus
ENSRNOG00000042195Pabpn19277.256ENSBTAG00000053753-7197.382Bos_taurus
ENSRNOG00000042195Pabpn110097.059ENSCJAG00000007960-10097.059Callithrix_jacchus
ENSRNOG00000042195Pabpn15997.191ENSCJAG00000004407-8997.191Callithrix_jacchus
ENSRNOG00000042195Pabpn110094.118ENSCAFG00000011482PABPN110094.118Canis_familiaris
ENSRNOG00000042195Pabpn110097.059ENSCAFG00020007298-10097.059Canis_lupus_dingo
ENSRNOG00000042195Pabpn110097.059ENSCAFG00020006651-10097.059Canis_lupus_dingo
ENSRNOG00000042195Pabpn110096.732ENSCHIG00000012184PABPN110096.732Capra_hircus
ENSRNOG00000042195Pabpn17090.141ENSTSYG00000033996BCL2L2-PABPN110098.876Carlito_syrichta
ENSRNOG00000042195Pabpn110096.405ENSCPOG00000025574PABPN110096.405Cavia_porcellus
ENSRNOG00000042195Pabpn110097.059ENSCCAG00000033954BCL2L2-PABPN110097.059Cebus_capucinus
ENSRNOG00000042195Pabpn110097.059ENSCATG00000038536BCL2L2-PABPN110097.059Cercocebus_atys
ENSRNOG00000042195Pabpn16879.024ENSCLAG00000012423PABPN19179.715Chinchilla_lanigera
ENSRNOG00000042195Pabpn110095.752ENSCSAG00000016036PABPN110095.752Chlorocebus_sabaeus
ENSRNOG00000042195Pabpn16587.562ENSCHOG00000004798BCL2L2-PABPN18787.562Choloepus_hoffmanni
ENSRNOG00000042195Pabpn15593.413ENSCPBG00000026060-9493.413Chrysemys_picta_bellii
ENSRNOG00000042195Pabpn16663.682ENSCING00000012468-8464.677Ciona_intestinalis
ENSRNOG00000042195Pabpn15960.112ENSCSAVG00000002001-9361.677Ciona_savignyi
ENSRNOG00000042195Pabpn17090.141ENSCANG00000009750BCL2L2-PABPN110098.876Colobus_angolensis_palliatus
ENSRNOG00000042195Pabpn19680.069ENSCANG00000030980-9477.978Colobus_angolensis_palliatus
ENSRNOG00000042195Pabpn110099.338ENSCGRG00001019696Pabpn110099.438Cricetulus_griseus_chok1gshd
ENSRNOG00000042195Pabpn15999.438ENSCGRG00000011102Pabpn110099.438Cricetulus_griseus_crigri
ENSRNOG00000042195Pabpn16979.439ENSCSEG00000008774pabpn18980.000Cynoglossus_semilaevis
ENSRNOG00000042195Pabpn18567.939ENSCVAG00000003152pabpn18680.583Cyprinodon_variegatus
ENSRNOG00000042195Pabpn16982.775ENSDARG00000045373pabpn18683.010Danio_rerio
ENSRNOG00000042195Pabpn110097.059ENSDNOG00000023682PABPN110097.059Dasypus_novemcinctus
ENSRNOG00000042195Pabpn110096.732ENSDORG00000028966-10096.732Dipodomys_ordii
ENSRNOG00000042195Pabpn16363.874FBgn0005648Pabp28263.874Drosophila_melanogaster
ENSRNOG00000042195Pabpn16478.462ENSEBUG00000002322pabpn18378.866Eptatretus_burgeri
ENSRNOG00000042195Pabpn110097.059ENSEASG00005011716PABPN110097.059Equus_asinus_asinus
ENSRNOG00000042195Pabpn19996.711ENSECAG00000011652PABPN19996.939Equus_caballus
ENSRNOG00000042195Pabpn19384.859ENSEEUG00000012973-7293.839Erinaceus_europaeus
ENSRNOG00000042195Pabpn18573.462ENSELUG00000022654pabpn18584.951Esox_lucius
ENSRNOG00000042195Pabpn110097.059ENSFCAG00000031922PABPN110097.059Felis_catus
ENSRNOG00000042195Pabpn15997.753ENSFDAG00000018381BCL2L2-PABPN110097.753Fukomys_damarensis
ENSRNOG00000042195Pabpn18566.412ENSFHEG00000007215pabpn18679.612Fundulus_heteroclitus
ENSRNOG00000042195Pabpn16582.741ENSGMOG00000003922pabpn16682.990Gadus_morhua
ENSRNOG00000042195Pabpn16490.306ENSGALG00000052930-6090.291Gallus_gallus
ENSRNOG00000042195Pabpn18570.342ENSGAFG00000017099pabpn18681.643Gambusia_affinis
ENSRNOG00000042195Pabpn18567.518ENSGACG00000002167pabpn19076.126Gasterosteus_aculeatus
ENSRNOG00000042195Pabpn19381.071ENSGGOG00000025919-9883.108Gorilla_gorilla
ENSRNOG00000042195Pabpn110097.059ENSGGOG00000022683-10097.059Gorilla_gorilla
ENSRNOG00000042195Pabpn19275.177ENSGGOG00000039675-7680.976Gorilla_gorilla
ENSRNOG00000042195Pabpn18570.611ENSHBUG00000019523pabpn18682.039Haplochromis_burtoni
ENSRNOG00000042195Pabpn15575.449ENSHGLG00000009842-9375.449Heterocephalus_glaber_female
ENSRNOG00000042195Pabpn19173.310ENSHGLG00000018588-7180.476Heterocephalus_glaber_female
ENSRNOG00000042195Pabpn110096.405ENSHGLG00000002927-10096.405Heterocephalus_glaber_female
ENSRNOG00000042195Pabpn19169.565ENSHGLG00100015565-7280.476Heterocephalus_glaber_male
ENSRNOG00000042195Pabpn15998.315ENSHGLG00100006673-10098.315Heterocephalus_glaber_male
ENSRNOG00000042195Pabpn15587.719ENSHGLG00100018935-9487.719Heterocephalus_glaber_male
ENSRNOG00000042195Pabpn18567.433ENSHCOG00000004655pabpn18681.553Hippocampus_comes
ENSRNOG00000042195Pabpn18570.992ENSIPUG00000008085PABPN18682.524Ictalurus_punctatus
ENSRNOG00000042195Pabpn16874.886ENSIPUG00000000180-8680.808Ictalurus_punctatus
ENSRNOG00000042195Pabpn15998.876ENSSTOG00000029847BCL2L2-PABPN110098.876Ictidomys_tridecemlineatus
ENSRNOG00000042195Pabpn15998.876ENSJJAG00000023507Gm2052110098.876Jaculus_jaculus
ENSRNOG00000042195Pabpn16980.952ENSKMAG00000018748pabpn18681.159Kryptolebias_marmoratus
ENSRNOG00000042195Pabpn18570.611ENSLBEG00000027266pabpn18682.039Labrus_bergylta
ENSRNOG00000042195Pabpn15987.079ENSLACG00000000646pabpn18384.817Latimeria_chalumnae
ENSRNOG00000042195Pabpn18170.850ENSLOCG00000000796pabpn16983.505Lepisosteus_oculatus
ENSRNOG00000042195Pabpn16964.762ENSLOCG00000004694pabpn1l9565.217Lepisosteus_oculatus
ENSRNOG00000042195Pabpn15098.013ENSLAFG00000031227-10098.013Loxodonta_africana
ENSRNOG00000042195Pabpn17090.141ENSMFAG00000032183BCL2L2-PABPN110098.876Macaca_fascicularis
ENSRNOG00000042195Pabpn16298.936ENSMMUG00000014747BCL2L2-PABPN110098.630Macaca_mulatta
ENSRNOG00000042195Pabpn19773.244ENSMMUG00000048382-9574.296Macaca_mulatta
ENSRNOG00000042195Pabpn17582.051ENSMNEG00000035750-9992.199Macaca_nemestrina
ENSRNOG00000042195Pabpn110097.059ENSMNEG00000045065BCL2L2-PABPN110097.059Macaca_nemestrina
ENSRNOG00000042195Pabpn19771.575ENSMLEG00000034623-9990.071Mandrillus_leucophaeus
ENSRNOG00000042195Pabpn17090.141ENSMLEG00000043862BCL2L2-PABPN110098.876Mandrillus_leucophaeus
ENSRNOG00000042195Pabpn18170.400ENSMAMG00000007979pabpn16881.281Mastacembelus_armatus
ENSRNOG00000042195Pabpn18170.000ENSMZEG00005011904pabpn16681.959Maylandia_zebra
ENSRNOG00000042195Pabpn19899.327ENSMAUG00000007383Gm205219999.327Mesocricetus_auratus
ENSRNOG00000042195Pabpn110097.386ENSMICG00000010002BCL2L2-PABPN110097.386Microcebus_murinus
ENSRNOG00000042195Pabpn110099.007ENSMOCG00000018557Gm2052110099.007Microtus_ochrogaster
ENSRNOG00000042195Pabpn18570.992ENSMMOG00000005405pabpn18682.524Mola_mola
ENSRNOG00000042195Pabpn16995.673ENSMODG00000004535-9191.367Monodelphis_domestica
ENSRNOG00000042195Pabpn18170.000ENSMALG00000019612pabpn16781.281Monopterus_albus
ENSRNOG00000042195Pabpn110099.007MGP_CAROLIEiJ_G0019277Pabpn110099.007Mus_caroli
ENSRNOG00000042195Pabpn16398.942MGP_CAROLIEiJ_G0019276Gm205215798.942Mus_caroli
ENSRNOG00000042195Pabpn16399.471ENSMUSG00000092232Gm205215799.471Mus_musculus
ENSRNOG00000042195Pabpn110099.338ENSMUSG00000022194Pabpn110099.438Mus_musculus
ENSRNOG00000042195Pabpn110099.338MGP_PahariEiJ_G0030295Pabpn1100100.000Mus_pahari
ENSRNOG00000042195Pabpn16399.471MGP_PahariEiJ_G0030294Gm205215799.471Mus_pahari
ENSRNOG00000042195Pabpn16399.471MGP_SPRETEiJ_G0020165Gm205215799.471Mus_spretus
ENSRNOG00000042195Pabpn110099.338MGP_SPRETEiJ_G0020166Pabpn110099.438Mus_spretus
ENSRNOG00000042195Pabpn15598.795ENSMPUG00000006775-9998.795Mustela_putorius_furo
ENSRNOG00000042195Pabpn16396.825ENSMLUG00000003800-10096.825Myotis_lucifugus
ENSRNOG00000042195Pabpn19285.563ENSMLUG00000012452-7091.549Myotis_lucifugus
ENSRNOG00000042195Pabpn19579.371ENSMLUG00000028677-9279.783Myotis_lucifugus
ENSRNOG00000042195Pabpn16398.942ENSNGAG00000019529Gm205215798.942Nannospalax_galili
ENSRNOG00000042195Pabpn18170.000ENSNBRG00000023955pabpn19481.548Neolamprologus_brichardi
ENSRNOG00000042195Pabpn17098.578ENSNLEG00000015007-7598.578Nomascus_leucogenys
ENSRNOG00000042195Pabpn19774.315ENSNLEG00000030598-7981.991Nomascus_leucogenys
ENSRNOG00000042195Pabpn15985.955ENSODEG00000011555-8985.629Octodon_degus
ENSRNOG00000042195Pabpn19283.394ENSODEG00000003739-9582.671Octodon_degus
ENSRNOG00000042195Pabpn110096.405ENSODEG00000002083BCL2L2-PABPN110096.405Octodon_degus
ENSRNOG00000042195Pabpn18170.000ENSONIG00000008112pabpn16681.959Oreochromis_niloticus
ENSRNOG00000042195Pabpn19997.667ENSOCUG00000016174PABPN110097.667Oryctolagus_cuniculus
ENSRNOG00000042195Pabpn16582.234ENSORLG00000027900pabpn18479.412Oryzias_latipes
ENSRNOG00000042195Pabpn16283.957ENSORLG00020004681pabpn16781.773Oryzias_latipes_hni
ENSRNOG00000042195Pabpn16982.297ENSORLG00015000018pabpn18682.524Oryzias_latipes_hsok
ENSRNOG00000042195Pabpn16978.744ENSOMEG00000016618pabpn17278.922Oryzias_melastigma
ENSRNOG00000042195Pabpn110097.059ENSOGAG00000008710PABPN110097.059Otolemur_garnettii
ENSRNOG00000042195Pabpn17090.141ENSOARG00000019336BCL2L2-PABPN15990.141Ovis_aries
ENSRNOG00000042195Pabpn15582.635ENSPPAG00000039421-9382.635Pan_paniscus
ENSRNOG00000042195Pabpn17090.141ENSPPAG00000028984BCL2L2-PABPN19998.795Pan_paniscus
ENSRNOG00000042195Pabpn110097.059ENSPPRG00000010567PABPN110097.059Panthera_pardus
ENSRNOG00000042195Pabpn15998.876ENSPTIG00000001063BCL2L2-PABPN110098.876Panthera_tigris_altaica
ENSRNOG00000042195Pabpn19273.022ENSPTRG00000047273-9974.007Pan_troglodytes
ENSRNOG00000042195Pabpn110097.059ENSPTRG00000006167BCL2L210097.059Pan_troglodytes
ENSRNOG00000042195Pabpn19776.370ENSPANG00000023326-9992.199Papio_anubis
ENSRNOG00000042195Pabpn110097.059ENSPANG00000021100BCL2L2-PABPN110097.059Papio_anubis
ENSRNOG00000042195Pabpn16563.131ENSPKIG00000008340pabpn1l9261.929Paramormyrops_kingsleyae
ENSRNOG00000042195Pabpn16386.316ENSPKIG00000008144-6782.759Paramormyrops_kingsleyae
ENSRNOG00000042195Pabpn16982.297ENSPKIG00000018052pabpn18683.010Paramormyrops_kingsleyae
ENSRNOG00000042195Pabpn18169.600ENSPMGG00000022027pabpn16981.443Periophthalmus_magnuspinnatus
ENSRNOG00000042195Pabpn110099.338ENSPEMG00000008332Gm2052110099.338Peromyscus_maniculatus_bairdii
ENSRNOG00000042195Pabpn15577.778ENSPMAG00000006212pabpn18476.355Petromyzon_marinus
ENSRNOG00000042195Pabpn17096.209ENSPCIG00000027751-9291.459Phascolarctos_cinereus
ENSRNOG00000042195Pabpn18567.681ENSPFOG00000010351pabpn18680.193Poecilia_formosa
ENSRNOG00000042195Pabpn18169.323ENSPLAG00000022696pabpn16880.392Poecilia_latipinna
ENSRNOG00000042195Pabpn18567.681ENSPMEG00000020856pabpn18680.193Poecilia_mexicana
ENSRNOG00000042195Pabpn18568.061ENSPREG00000011278pabpn18680.676Poecilia_reticulata
ENSRNOG00000042195Pabpn18589.695ENSPPYG00000005663PABPN19192.157Pongo_abelii
ENSRNOG00000042195Pabpn16683.500ENSPCAG00000005902PABPN19283.333Procavia_capensis
ENSRNOG00000042195Pabpn110097.386ENSPCOG00000028047BCL2L2-PABPN110097.386Propithecus_coquereli
ENSRNOG00000042195Pabpn17094.787ENSPVAG00000005270PABPN19287.857Pteropus_vampyrus
ENSRNOG00000042195Pabpn18570.611ENSPNYG00000013182pabpn18682.039Pundamilia_nyererei
ENSRNOG00000042195Pabpn18571.756ENSPNAG00000023526pabpn18683.495Pygocentrus_nattereri
ENSRNOG00000042195Pabpn16663.000ENSPNAG00000021666pabpn1l9464.677Pygocentrus_nattereri
ENSRNOG00000042195Pabpn15998.870ENSRBIG00000040762BCL2L2-PABPN15598.870Rhinopithecus_bieti
ENSRNOG00000042195Pabpn19779.932ENSRBIG00000039547-9279.061Rhinopithecus_bieti
ENSRNOG00000042195Pabpn17285.714ENSRBIG00000042811-8885.308Rhinopithecus_bieti
ENSRNOG00000042195Pabpn17281.567ENSRROG00000036409-6781.567Rhinopithecus_roxellana
ENSRNOG00000042195Pabpn19980.656ENSRROG00000040409-7585.854Rhinopithecus_roxellana
ENSRNOG00000042195Pabpn15998.876ENSRROG00000045535BCL2L2-PABPN110098.876Rhinopithecus_roxellana
ENSRNOG00000042195Pabpn17084.956ENSSBOG00000026930BCL2L2-PABPN19998.795Saimiri_boliviensis_boliviensis
ENSRNOG00000042195Pabpn17286.239ENSSHAG00000014841-8796.296Sarcophilus_harrisii
ENSRNOG00000042195Pabpn18665.134ENSSHAG00000007707-8973.460Sarcophilus_harrisii
ENSRNOG00000042195Pabpn16960.577ENSSFOG00015015833pabpn1l8863.636Scleropages_formosus
ENSRNOG00000042195Pabpn17278.281ENSSFOG00015012565pabpn19082.039Scleropages_formosus
ENSRNOG00000042195Pabpn18570.611ENSSFOG00015014718pabpn18682.524Scleropages_formosus
ENSRNOG00000042195Pabpn18570.611ENSSMAG00000020157pabpn18682.039Scophthalmus_maximus
ENSRNOG00000042195Pabpn18170.000ENSSDUG00000020582pabpn16781.281Seriola_dumerili
ENSRNOG00000042195Pabpn18570.611ENSSLDG00000007118pabpn18682.039Seriola_lalandi_dorsalis
ENSRNOG00000042195Pabpn15592.216ENSSPUG00000018308-9492.216Sphenodon_punctatus
ENSRNOG00000042195Pabpn18570.611ENSSPAG00000021658pabpn18682.039Stegastes_partitus
ENSRNOG00000042195Pabpn15855.114ENSSSCG00000038472-9154.491Sus_scrofa
ENSRNOG00000042195Pabpn19366.071ENSSSCG00000034805-7668.627Sus_scrofa
ENSRNOG00000042195Pabpn110097.059ENSSSCG00000002023PABPN110097.059Sus_scrofa
ENSRNOG00000042195Pabpn18571.374ENSTRUG00000023664pabpn18683.010Takifugu_rubripes
ENSRNOG00000042195Pabpn16979.048ENSTNIG00000005369pabpn19379.227Tetraodon_nigroviridis
ENSRNOG00000042195Pabpn110096.405ENSUAMG00000024460PABPN110096.405Ursus_americanus
ENSRNOG00000042195Pabpn17090.141ENSUMAG00000014288BCL2L2-PABPN16490.141Ursus_maritimus
ENSRNOG00000042195Pabpn17090.141ENSVVUG00000019912BCL2L2-PABPN18787.330Vulpes_vulpes
ENSRNOG00000042195Pabpn16589.286ENSXETG00000014597pabpn17088.889Xenopus_tropicalis
ENSRNOG00000042195Pabpn15868.362ENSXCOG00000005158pabpn18980.921Xiphophorus_couchianus
ENSRNOG00000042195Pabpn18568.441ENSXMAG00000006196pabpn18681.159Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000165MAPK cascade-IEAProcess
GO:0000165MAPK cascade-ISOProcess
GO:0003674molecular_function-NDFunction
GO:0003723RNA binding-IEAFunction
GO:0005634nucleus14976164.IDAComponent
GO:0005634nucleus-ISOComponent
GO:0008150biological_process-NDProcess
GO:0016973poly(A)+ mRNA export from nucleus-IEAProcess
GO:0016973poly(A)+ mRNA export from nucleus-ISOProcess
GO:0042405nuclear inclusion body18255312.IDAComponent
GO:0042405nuclear inclusion body-ISOComponent
GO:0070063RNA polymerase binding-IEAFunction
GO:0070063RNA polymerase binding-ISOFunction
GO:0071222cellular response to lipopolysaccharide-IEAProcess
GO:0071222cellular response to lipopolysaccharide-ISOProcess
GO:1904247positive regulation of polynucleotide adenylyltransferase activity-IEAProcess
GO:1904247positive regulation of polynucleotide adenylyltransferase activity-ISOProcess
GO:1990904ribonucleoprotein complex-IEAComponent
GO:1990904ribonucleoprotein complex-ISOComponent

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