EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000042340 (Gene tree)
Gene ID: 679894
Gene Symbol: LOC679894
Alias: -
Full Name: similar to THO complex subunit 2 (Tho2)
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 5159 bases
Position: chr14:6581983-6587141
Accession: 1583596
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000058376	Tho2	PF11262.8	1.9e-100	1	1
ENSRNOP00000058376	Thoc2	PF11732.8	1.7e-36	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000061664	-	5159	XM_008770069	ENSRNOP00000058376	1587 (aa)	XP_008768291	F1LZ00

Gene Model

Click here to download ENSRNOG00000042340's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000042340's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000042340	LOC679894	100	89.335	ENSRNOG00000007315	Thoc2	100	89.969

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000042340	LOC679894	99	90.208	ENSG00000125676	THOC2	100	90.464	Homo_sapiens
ENSRNOG00000042340	LOC679894	99	71.671	ENSAPOG00000003459	thoc2	99	71.429	Acanthochromis_polyacanthus
ENSRNOG00000042340	LOC679894	100	89.536	ENSAMEG00000014841	THOC2	100	89.793	Ailuropoda_melanoleuca
ENSRNOG00000042340	LOC679894	88	71.591	ENSACIG00000015022	thoc2	99	71.144	Amphilophus_citrinellus
ENSRNOG00000042340	LOC679894	98	69.290	ENSAOCG00000013305	thoc2	95	73.888	Amphiprion_ocellaris
ENSRNOG00000042340	LOC679894	98	69.290	ENSAPEG00000004792	thoc2	97	72.011	Amphiprion_percula
ENSRNOG00000042340	LOC679894	99	70.770	ENSATEG00000013110	thoc2	99	70.581	Anabas_testudineus
ENSRNOG00000042340	LOC679894	95	82.566	ENSAPLG00000010614	THOC2	100	83.026	Anas_platyrhynchos
ENSRNOG00000042340	LOC679894	99	80.597	ENSACAG00000011585	THOC2	99	81.157	Anolis_carolinensis
ENSRNOG00000042340	LOC679894	99	86.528	ENSANAG00000034037	-	99	88.094	Aotus_nancymaae
ENSRNOG00000042340	LOC679894	100	88.449	ENSANAG00000022505	-	100	88.896	Aotus_nancymaae
ENSRNOG00000042340	LOC679894	96	69.423	ENSACLG00000012036	thoc2	100	67.915	Astatotilapia_calliptera
ENSRNOG00000042340	LOC679894	99	68.683	ENSAMXG00000014184	thoc2	97	70.152	Astyanax_mexicanus
ENSRNOG00000042340	LOC679894	100	89.956	ENSBTAG00000008388	THOC2	100	90.339	Bos_taurus
ENSRNOG00000042340	LOC679894	98	88.405	ENSBTAG00000047341	-	98	88.020	Bos_taurus
ENSRNOG00000042340	LOC679894	91	31.812	WBGene00015813	thoc-2	81	33.908	Caenorhabditis_elegans
ENSRNOG00000042340	LOC679894	99	89.514	ENSCJAG00000016157	THOC2	100	89.837	Callithrix_jacchus
ENSRNOG00000042340	LOC679894	100	90.082	ENSCAFG00000018574	THOC2	100	90.339	Canis_familiaris
ENSRNOG00000042340	LOC679894	99	89.905	ENSCAFG00020002284	THOC2	99	89.660	Canis_lupus_dingo
ENSRNOG00000042340	LOC679894	98	88.967	ENSCHIG00000025851	-	99	89.352	Capra_hircus
ENSRNOG00000042340	LOC679894	99	89.905	ENSCHIG00000017733	-	99	89.660	Capra_hircus
ENSRNOG00000042340	LOC679894	100	87.664	ENSTSYG00000012292	THOC2	100	88.048	Carlito_syrichta
ENSRNOG00000042340	LOC679894	99	87.453	ENSCPOG00000038670	THOC2	99	87.516	Cavia_porcellus
ENSRNOG00000042340	LOC679894	99	90.082	ENSCCAG00000021906	THOC2	100	90.402	Cebus_capucinus
ENSRNOG00000042340	LOC679894	99	90.272	ENSCATG00000003183	THOC2	100	90.527	Cercocebus_atys
ENSRNOG00000042340	LOC679894	100	89.831	ENSCLAG00000002641	THOC2	100	90.025	Chinchilla_lanigera
ENSRNOG00000042340	LOC679894	99	90.272	ENSCSAG00000018332	THOC2	100	90.527	Chlorocebus_sabaeus
ENSRNOG00000042340	LOC679894	98	81.503	ENSCPBG00000012863	THOC2	99	85.939	Chrysemys_picta_bellii
ENSRNOG00000042340	LOC679894	75	57.718	ENSCING00000007364	-	99	57.550	Ciona_intestinalis
ENSRNOG00000042340	LOC679894	62	58.284	ENSCSAVG00000007923	-	100	76.596	Ciona_savignyi
ENSRNOG00000042340	LOC679894	99	90.272	ENSCANG00000035077	THOC2	100	90.527	Colobus_angolensis_palliatus
ENSRNOG00000042340	LOC679894	100	86.983	ENSCGRG00001015509	Thoc2	100	87.608	Cricetulus_griseus_chok1gshd
ENSRNOG00000042340	LOC679894	100	94.518	ENSCGRG00001009811	BC005561	99	94.518	Cricetulus_griseus_chok1gshd
ENSRNOG00000042340	LOC679894	100	94.581	ENSCGRG00000000980	BC005561	99	94.581	Cricetulus_griseus_crigri
ENSRNOG00000042340	LOC679894	98	86.052	ENSCGRG00000001226	Thoc2	99	86.701	Cricetulus_griseus_crigri
ENSRNOG00000042340	LOC679894	87	72.274	ENSCSEG00000019946	thoc2	100	71.758	Cynoglossus_semilaevis
ENSRNOG00000042340	LOC679894	99	68.362	ENSCVAG00000021509	thoc2	99	68.279	Cyprinodon_variegatus
ENSRNOG00000042340	LOC679894	99	71.805	ENSDARG00000037503	thoc2	99	71.213	Danio_rerio
ENSRNOG00000042340	LOC679894	100	86.875	ENSDNOG00000012487	THOC2	100	88.132	Dasypus_novemcinctus
ENSRNOG00000042340	LOC679894	97	40.798	FBgn0031390	tho2	74	46.968	Drosophila_melanogaster
ENSRNOG00000042340	LOC679894	88	80.540	ENSETEG00000016183	THOC2	91	80.606	Echinops_telfairi
ENSRNOG00000042340	LOC679894	95	90.429	ENSEASG00005017399	THOC2	100	90.627	Equus_asinus_asinus
ENSRNOG00000042340	LOC679894	100	90.025	ENSECAG00000010431	THOC2	100	90.508	Equus_caballus
ENSRNOG00000042340	LOC679894	73	95.793	ENSEEUG00000015598	THOC2	78	95.793	Erinaceus_europaeus
ENSRNOG00000042340	LOC679894	90	73.398	ENSELUG00000007778	thoc2	96	73.324	Esox_lucius
ENSRNOG00000042340	LOC679894	100	89.768	ENSFCAG00000008301	THOC2	100	90.151	Felis_catus
ENSRNOG00000042340	LOC679894	99	80.707	ENSFALG00000001519	THOC2	99	80.955	Ficedula_albicollis
ENSRNOG00000042340	LOC679894	98	90.064	ENSFDAG00000017237	THOC2	100	90.261	Fukomys_damarensis
ENSRNOG00000042340	LOC679894	99	67.527	ENSFHEG00000001695	thoc2	99	67.653	Fundulus_heteroclitus
ENSRNOG00000042340	LOC679894	94	69.348	ENSGMOG00000000069	thoc2	97	69.021	Gadus_morhua
ENSRNOG00000042340	LOC679894	92	83.231	ENSGALG00000008507	THOC2	98	83.162	Gallus_gallus
ENSRNOG00000042340	LOC679894	97	69.852	ENSGAFG00000005902	thoc2	100	69.052	Gambusia_affinis
ENSRNOG00000042340	LOC679894	95	69.887	ENSGACG00000020367	thoc2	97	69.536	Gasterosteus_aculeatus
ENSRNOG00000042340	LOC679894	98	82.394	ENSGAGG00000024263	THOC2	99	82.714	Gopherus_agassizii
ENSRNOG00000042340	LOC679894	99	90.208	ENSGGOG00000000486	THOC2	100	90.464	Gorilla_gorilla
ENSRNOG00000042340	LOC679894	92	72.883	ENSHBUG00000003516	thoc2	98	72.840	Haplochromis_burtoni
ENSRNOG00000042340	LOC679894	100	88.652	ENSHGLG00000004222	THOC2	100	89.342	Heterocephalus_glaber_female
ENSRNOG00000042340	LOC679894	93	90.659	ENSHGLG00100011595	THOC2	93	91.074	Heterocephalus_glaber_male
ENSRNOG00000042340	LOC679894	97	69.994	ENSHCOG00000006276	thoc2	99	69.371	Hippocampus_comes
ENSRNOG00000042340	LOC679894	99	70.927	ENSIPUG00000015876	thoc2	99	70.677	Ictalurus_punctatus
ENSRNOG00000042340	LOC679894	100	89.711	ENSSTOG00000009134	THOC2	100	90.345	Ictidomys_tridecemlineatus
ENSRNOG00000042340	LOC679894	100	88.708	ENSJJAG00000017282	Thoc2	100	89.781	Jaculus_jaculus
ENSRNOG00000042340	LOC679894	99	88.672	ENSJJAG00000008784	BC005561	99	88.672	Jaculus_jaculus
ENSRNOG00000042340	LOC679894	95	67.697	ENSKMAG00000012263	thoc2	99	73.358	Kryptolebias_marmoratus
ENSRNOG00000042340	LOC679894	99	70.526	ENSLBEG00000003049	thoc2	98	72.573	Labrus_bergylta
ENSRNOG00000042340	LOC679894	98	79.372	ENSLACG00000016494	THOC2	99	79.436	Latimeria_chalumnae
ENSRNOG00000042340	LOC679894	99	76.560	ENSLOCG00000014546	thoc2	99	76.293	Lepisosteus_oculatus
ENSRNOG00000042340	LOC679894	100	89.517	ENSLAFG00000003146	THOC2	100	89.837	Loxodonta_africana
ENSRNOG00000042340	LOC679894	99	90.272	ENSMFAG00000042215	THOC2	100	90.527	Macaca_fascicularis
ENSRNOG00000042340	LOC679894	99	90.272	ENSMMUG00000003745	THOC2	100	90.527	Macaca_mulatta
ENSRNOG00000042340	LOC679894	99	90.272	ENSMNEG00000033627	THOC2	100	90.527	Macaca_nemestrina
ENSRNOG00000042340	LOC679894	99	90.272	ENSMLEG00000034817	THOC2	100	90.527	Mandrillus_leucophaeus
ENSRNOG00000042340	LOC679894	95	70.801	ENSMAMG00000012993	thoc2	99	68.632	Mastacembelus_armatus
ENSRNOG00000042340	LOC679894	99	71.608	ENSMZEG00005015842	thoc2	99	71.276	Maylandia_zebra
ENSRNOG00000042340	LOC679894	98	81.587	ENSMGAG00000007345	THOC2	100	82.043	Meleagris_gallopavo
ENSRNOG00000042340	LOC679894	99	88.826	ENSMAUG00000002356	Thoc2	100	89.342	Mesocricetus_auratus
ENSRNOG00000042340	LOC679894	100	89.014	ENSMICG00000011840	THOC2	100	90.213	Microcebus_murinus
ENSRNOG00000042340	LOC679894	100	88.645	ENSMOCG00000009946	Thoc2	100	89.279	Microtus_ochrogaster
ENSRNOG00000042340	LOC679894	100	93.888	ENSMOCG00000019406	BC005561	99	93.888	Microtus_ochrogaster
ENSRNOG00000042340	LOC679894	98	68.915	ENSMMOG00000016313	thoc2	96	73.264	Mola_mola
ENSRNOG00000042340	LOC679894	99	80.375	ENSMODG00000014984	THOC2	99	80.613	Monodelphis_domestica
ENSRNOG00000042340	LOC679894	98	68.626	ENSMALG00000019718	thoc2	97	69.547	Monopterus_albus
ENSRNOG00000042340	LOC679894	100	97.417	MGP_CAROLIEiJ_G0027482	BC005561	99	97.417	Mus_caroli
ENSRNOG00000042340	LOC679894	99	88.699	MGP_CAROLIEiJ_G0033023	Thoc2	100	89.781	Mus_caroli
ENSRNOG00000042340	LOC679894	99	88.826	ENSMUSG00000037475	Thoc2	100	89.906	Mus_musculus
ENSRNOG00000042340	LOC679894	100	97.227	ENSMUSG00000079065	BC005561	99	97.227	Mus_musculus
ENSRNOG00000042340	LOC679894	100	96.723	MGP_PahariEiJ_G0017260	BC005561	99	96.723	Mus_pahari
ENSRNOG00000042340	LOC679894	99	88.763	MGP_PahariEiJ_G0031569	Thoc2	100	89.843	Mus_pahari
ENSRNOG00000042340	LOC679894	100	97.353	MGP_SPRETEiJ_G0028479	BC005561	99	97.353	Mus_spretus
ENSRNOG00000042340	LOC679894	99	88.826	MGP_SPRETEiJ_G0034181	Thoc2	100	89.906	Mus_spretus
ENSRNOG00000042340	LOC679894	100	89.569	ENSMPUG00000001357	THOC2	100	89.825	Mustela_putorius_furo
ENSRNOG00000042340	LOC679894	95	79.934	ENSMLUG00000026072	-	100	79.934	Myotis_lucifugus
ENSRNOG00000042340	LOC679894	90	86.199	ENSMLUG00000027559	-	99	84.995	Myotis_lucifugus
ENSRNOG00000042340	LOC679894	94	75.717	ENSMLUG00000028256	-	99	75.650	Myotis_lucifugus
ENSRNOG00000042340	LOC679894	98	89.193	ENSMLUG00000013656	-	100	90.025	Myotis_lucifugus
ENSRNOG00000042340	LOC679894	100	91.132	ENSNGAG00000010936	BC005561	99	90.755	Nannospalax_galili
ENSRNOG00000042340	LOC679894	100	88.188	ENSNGAG00000016184	Thoc2	100	88.695	Nannospalax_galili
ENSRNOG00000042340	LOC679894	90	71.528	ENSNBRG00000018089	thoc2	97	71.897	Neolamprologus_brichardi
ENSRNOG00000042340	LOC679894	100	83.978	ENSNLEG00000015055	THOC2	100	84.361	Nomascus_leucogenys
ENSRNOG00000042340	LOC679894	82	84.393	ENSMEUG00000003533	THOC2	81	84.393	Notamacropus_eugenii
ENSRNOG00000042340	LOC679894	99	89.836	ENSODEG00000002478	THOC2	100	90.031	Octodon_degus
ENSRNOG00000042340	LOC679894	99	71.706	ENSONIG00000004348	thoc2	99	71.375	Oreochromis_niloticus
ENSRNOG00000042340	LOC679894	97	82.145	ENSOANG00000004054	THOC2	99	83.173	Ornithorhynchus_anatinus
ENSRNOG00000042340	LOC679894	100	89.140	ENSOCUG00000005996	THOC2	100	89.523	Oryctolagus_cuniculus
ENSRNOG00000042340	LOC679894	99	70.980	ENSORLG00000008692	thoc2	99	70.333	Oryzias_latipes
ENSRNOG00000042340	LOC679894	99	68.695	ENSORLG00020002321	thoc2	93	75.271	Oryzias_latipes_hni
ENSRNOG00000042340	LOC679894	99	69.579	ENSORLG00015000665	thoc2	98	72.456	Oryzias_latipes_hsok
ENSRNOG00000042340	LOC679894	99	70.644	ENSOMEG00000004006	thoc2	99	70.076	Oryzias_melastigma
ENSRNOG00000042340	LOC679894	100	88.889	ENSOGAG00000000302	THOC2	100	90.151	Otolemur_garnettii
ENSRNOG00000042340	LOC679894	98	90.057	ENSOARG00000013665	-	100	90.446	Ovis_aries
ENSRNOG00000042340	LOC679894	76	92.063	ENSOARG00000003614	-	96	92.063	Ovis_aries
ENSRNOG00000042340	LOC679894	99	87.854	ENSPPAG00000040720	THOC2	99	91.367	Pan_paniscus
ENSRNOG00000042340	LOC679894	100	89.705	ENSPPRG00000023137	THOC2	100	90.088	Panthera_pardus
ENSRNOG00000042340	LOC679894	100	88.073	ENSPTIG00000006983	THOC2	100	87.508	Panthera_tigris_altaica
ENSRNOG00000042340	LOC679894	100	90.144	ENSPTRG00000022246	THOC2	100	90.527	Pan_troglodytes
ENSRNOG00000042340	LOC679894	99	87.070	ENSPANG00000004038	THOC2	100	87.810	Papio_anubis
ENSRNOG00000042340	LOC679894	93	74.615	ENSPKIG00000021719	thoc2	94	74.748	Paramormyrops_kingsleyae
ENSRNOG00000042340	LOC679894	99	81.569	ENSPSIG00000015352	THOC2	98	82.192	Pelodiscus_sinensis
ENSRNOG00000042340	LOC679894	90	70.494	ENSPMGG00000002688	thoc2	95	70.404	Periophthalmus_magnuspinnatus
ENSRNOG00000042340	LOC679894	99	88.580	ENSPEMG00000007626	Thoc2	100	89.098	Peromyscus_maniculatus_bairdii
ENSRNOG00000042340	LOC679894	100	95.589	ENSPEMG00000011125	BC005561	99	95.589	Peromyscus_maniculatus_bairdii
ENSRNOG00000042340	LOC679894	99	62.001	ENSPMAG00000007219	-	99	73.263	Petromyzon_marinus
ENSRNOG00000042340	LOC679894	62	86.829	ENSPCIG00000007574	THOC2	99	87.957	Phascolarctos_cinereus
ENSRNOG00000042340	LOC679894	99	70.328	ENSPFOG00000019556	thoc2	99	69.634	Poecilia_formosa
ENSRNOG00000042340	LOC679894	99	68.821	ENSPLAG00000005761	thoc2	99	68.150	Poecilia_latipinna
ENSRNOG00000042340	LOC679894	99	68.546	ENSPMEG00000002951	thoc2	99	68.108	Poecilia_mexicana
ENSRNOG00000042340	LOC679894	99	71.069	ENSPREG00000021746	thoc2	99	70.082	Poecilia_reticulata
ENSRNOG00000042340	LOC679894	99	90.208	ENSPPYG00000020695	THOC2	100	90.464	Pongo_abelii
ENSRNOG00000042340	LOC679894	100	76.552	ENSPCAG00000005402	THOC2	100	76.364	Procavia_capensis
ENSRNOG00000042340	LOC679894	99	85.723	ENSPCOG00000001806	THOC2	99	86.989	Propithecus_coquereli
ENSRNOG00000042340	LOC679894	100	88.826	ENSPVAG00000006132	THOC2	100	89.210	Pteropus_vampyrus
ENSRNOG00000042340	LOC679894	96	69.645	ENSPNYG00000019622	thoc2	100	68.132	Pundamilia_nyererei
ENSRNOG00000042340	LOC679894	100	67.665	ENSPNAG00000020593	thoc2	99	67.273	Pygocentrus_nattereri
ENSRNOG00000042340	LOC679894	93	78.533	ENSRBIG00000044129	THOC2	98	87.294	Rhinopithecus_bieti
ENSRNOG00000042340	LOC679894	99	90.272	ENSRROG00000041515	THOC2	100	90.527	Rhinopithecus_roxellana
ENSRNOG00000042340	LOC679894	99	90.019	ENSSBOG00000007245	THOC2	100	90.402	Saimiri_boliviensis_boliviensis
ENSRNOG00000042340	LOC679894	98	81.016	ENSSHAG00000015987	THOC2	100	81.067	Sarcophilus_harrisii
ENSRNOG00000042340	LOC679894	99	72.682	ENSSFOG00015010127	thoc2	98	75.967	Scleropages_formosus
ENSRNOG00000042340	LOC679894	99	75.442	ENSSFOG00015004767	THOC2	99	74.937	Scleropages_formosus
ENSRNOG00000042340	LOC679894	99	70.962	ENSSMAG00000016574	thoc2	99	70.820	Scophthalmus_maximus
ENSRNOG00000042340	LOC679894	99	71.734	ENSSDUG00000012815	thoc2	99	72.590	Seriola_dumerili
ENSRNOG00000042340	LOC679894	99	71.545	ENSSLDG00000015816	thoc2	99	71.429	Seriola_lalandi_dorsalis
ENSRNOG00000042340	LOC679894	95	83.850	ENSSARG00000005799	THOC2	100	84.387	Sorex_araneus
ENSRNOG00000042340	LOC679894	100	81.328	ENSSPUG00000012889	THOC2	100	81.700	Sphenodon_punctatus
ENSRNOG00000042340	LOC679894	82	75.538	ENSSPAG00000023593	thoc2	93	74.288	Stegastes_partitus
ENSRNOG00000042340	LOC679894	100	89.573	ENSSSCG00000012639	THOC2	100	90.581	Sus_scrofa
ENSRNOG00000042340	LOC679894	92	82.937	ENSTGUG00000003682	THOC2	100	83.345	Taeniopygia_guttata
ENSRNOG00000042340	LOC679894	99	69.343	ENSTRUG00000015122	thoc2	99	69.153	Takifugu_rubripes
ENSRNOG00000042340	LOC679894	94	68.995	ENSTNIG00000011794	thoc2	97	68.858	Tetraodon_nigroviridis
ENSRNOG00000042340	LOC679894	82	83.551	ENSTBEG00000004420	-	100	83.794	Tupaia_belangeri
ENSRNOG00000042340	LOC679894	57	92.562	ENSTBEG00000005854	-	60	92.562	Tupaia_belangeri
ENSRNOG00000042340	LOC679894	100	82.873	ENSTTRG00000002762	THOC2	100	84.787	Tursiops_truncatus
ENSRNOG00000042340	LOC679894	99	89.842	ENSUAMG00000008780	THOC2	99	89.952	Ursus_americanus
ENSRNOG00000042340	LOC679894	98	79.674	ENSUMAG00000024014	THOC2	99	87.850	Ursus_maritimus
ENSRNOG00000042340	LOC679894	98	89.994	ENSVPAG00000006247	THOC2	100	90.382	Vicugna_pacos
ENSRNOG00000042340	LOC679894	99	89.905	ENSVVUG00000028282	THOC2	99	89.660	Vulpes_vulpes
ENSRNOG00000042340	LOC679894	100	76.360	ENSXETG00000016195	thoc2	99	89.251	Xenopus_tropicalis
ENSRNOG00000042340	LOC679894	97	69.434	ENSXCOG00000006301	thoc2	100	68.682	Xiphophorus_couchianus
ENSRNOG00000042340	LOC679894	97	69.478	ENSXMAG00000011604	thoc2	99	70.555	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000445	THO complex part of transcription export complex	21873635.	IBA	Component
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0006397	mRNA processing	-	IEA	Process
GO:0006406	mRNA export from nucleus	21873635.	IBA	Process