EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000042777 (Gene tree)
Gene ID: 102548693
Gene Symbol: Zfp28
Alias: LOC102548693|Zfp28l
Full Name: zinc finger protein 28
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 6061 bases
Position: chr1:71167156-71173216
Accession: 7679103
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000020523	zf-C2H2	PF00096.26	3.2e-65	1	11
ENSRNOP00000020523	zf-C2H2	PF00096.26	3.2e-65	2	11
ENSRNOP00000020523	zf-C2H2	PF00096.26	3.2e-65	3	11
ENSRNOP00000020523	zf-C2H2	PF00096.26	3.2e-65	4	11
ENSRNOP00000020523	zf-C2H2	PF00096.26	3.2e-65	5	11
ENSRNOP00000020523	zf-C2H2	PF00096.26	3.2e-65	6	11
ENSRNOP00000020523	zf-C2H2	PF00096.26	3.2e-65	7	11
ENSRNOP00000020523	zf-C2H2	PF00096.26	3.2e-65	8	11
ENSRNOP00000020523	zf-C2H2	PF00096.26	3.2e-65	9	11
ENSRNOP00000020523	zf-C2H2	PF00096.26	3.2e-65	10	11
ENSRNOP00000020523	zf-C2H2	PF00096.26	3.2e-65	11	11
ENSRNOP00000020523	zf-met	PF12874.7	4.2e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000020523	-	2561	XM_006228205	ENSRNOP00000020523	721 (aa)	XP_006228267	D3ZVD4

Gene Model

Click here to download ENSRNOG00000042777's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000042777's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000042777	Zfp28	83	47.921	ENSRNOG00000049259	LOC102549842	99	47.921
ENSRNOG00000042777	Zfp28	67	31.765	ENSRNOG00000014658	Zfp423	98	31.765
ENSRNOG00000042777	Zfp28	66	37.450	ENSRNOG00000028628	LOC100911196	78	34.302
ENSRNOG00000042777	Zfp28	64	51.636	ENSRNOG00000025937	Zfp26	87	51.636
ENSRNOG00000042777	Zfp28	67	54.693	ENSRNOG00000019416	Zfp61	76	54.693
ENSRNOG00000042777	Zfp28	63	48.035	ENSRNOG00000027923	Mynn	54	47.761
ENSRNOG00000042777	Zfp28	67	55.583	ENSRNOG00000032625	AC118165.1	100	55.583
ENSRNOG00000042777	Zfp28	63	54.733	ENSRNOG00000019059	Zfp1	80	54.733
ENSRNOG00000042777	Zfp28	67	49.403	ENSRNOG00000061533	AABR07001926.3	95	49.867
ENSRNOG00000042777	Zfp28	63	44.853	ENSRNOG00000017066	Zfp384	51	42.174
ENSRNOG00000042777	Zfp28	60	47.458	ENSRNOG00000016279	Zfp865	67	47.458
ENSRNOG00000042777	Zfp28	63	38.978	ENSRNOG00000023679	Prdm5	73	38.978
ENSRNOG00000042777	Zfp28	68	47.198	ENSRNOG00000022431	Zfp867	88	47.198
ENSRNOG00000042777	Zfp28	63	33.130	ENSRNOG00000055761	Zfp574	94	35.961
ENSRNOG00000042777	Zfp28	62	33.735	ENSRNOG00000008239	Repin1	82	38.421
ENSRNOG00000042777	Zfp28	83	60.055	ENSRNOG00000030517	Zfp879	96	60.055
ENSRNOG00000042777	Zfp28	63	54.667	ENSRNOG00000003455	Zfp13	60	54.667
ENSRNOG00000042777	Zfp28	63	48.730	ENSRNOG00000043341	Zfp51	96	50.246
ENSRNOG00000042777	Zfp28	68	47.330	ENSRNOG00000016417	Zfp136	88	47.330
ENSRNOG00000042777	Zfp28	63	47.872	ENSRNOG00000006684	Zfp317	92	47.044
ENSRNOG00000042777	Zfp28	60	53.091	ENSRNOG00000029490	Znf768	60	52.313
ENSRNOG00000042777	Zfp28	58	42.453	ENSRNOG00000009594	Snai1	53	42.453
ENSRNOG00000042777	Zfp28	58	40.458	ENSRNOG00000047699	Snai2	50	40.458
ENSRNOG00000042777	Zfp28	67	51.628	ENSRNOG00000052406	LOC102552527	94	51.628
ENSRNOG00000042777	Zfp28	64	51.680	ENSRNOG00000048394	Zfp560	75	51.680
ENSRNOG00000042777	Zfp28	65	52.616	ENSRNOG00000014331	Zfp810	85	52.616
ENSRNOG00000042777	Zfp28	63	31.839	ENSRNOG00000016874	Zfp521	89	33.333
ENSRNOG00000042777	Zfp28	66	42.941	ENSRNOG00000010436	Zbtb17	62	42.941
ENSRNOG00000042777	Zfp28	59	41.060	ENSRNOG00000013586	Snai3	54	41.060
ENSRNOG00000042777	Zfp28	61	37.778	ENSRNOG00000007576	Zfp597	93	37.778
ENSRNOG00000042777	Zfp28	63	40.821	ENSRNOG00000002713	Zfp672	89	40.821
ENSRNOG00000042777	Zfp28	62	55.120	ENSRNOG00000030308	Zfp251	69	55.120
ENSRNOG00000042777	Zfp28	96	42.654	ENSRNOG00000014712	Zfp39	88	48.341
ENSRNOG00000042777	Zfp28	67	46.485	ENSRNOG00000024056	Zfp17	77	46.485
ENSRNOG00000042777	Zfp28	66	60.494	ENSRNOG00000015188	AABR07053681.1	89	60.494
ENSRNOG00000042777	Zfp28	66	35.853	ENSRNOG00000013460	Zfp319	92	38.107

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000042777	Zfp28	100	81.856	ENSPEMG00000000472	Zfp28	84	81.856	Peromyscus_maniculatus_bairdii

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0046872	metal ion binding	-	IEA	Function