EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000042823 (Gene tree)
Gene ID: 302776
Gene Symbol: RGD1561230
Alias: LOC302776
Full Name: similar to RIKEN cDNA 4921511C20 gene
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 2078 bases
Position: chrX:97074710-97076787
Accession: 1561230
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000051365	KH_1	PF00013.29	9.2e-53	1	3
ENSRNOP00000051365	KH_1	PF00013.29	9.2e-53	2	3
ENSRNOP00000051365	KH_1	PF00013.29	9.2e-53	3	3

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000044379	-	2078	XM_006257206	ENSRNOP00000051365	676 (aa)	XP_006257268	D3ZYY6

Gene Model

Click here to download ENSRNOG00000042823's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000042823's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000042823	RGD1561230	94	57.953	ENSRNOG00000031294	RGD1563104	72	57.953
ENSRNOG00000042823	RGD1561230	97	44.073	ENSRNOG00000031479	Hdlbp	92	44.073
ENSRNOG00000042823	RGD1561230	64	57.471	ENSRNOG00000028847	AABR07040251.1	100	56.948

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000042823	RGD1561230	97	46.960	ENSG00000115677	HDLBP	99	46.960	Homo_sapiens
ENSRNOG00000042823	RGD1561230	93	42.587	ENSAPOG00000012609	hdlbpa	93	42.767	Acanthochromis_polyacanthus
ENSRNOG00000042823	RGD1561230	97	44.529	ENSAMEG00000016552	HDLBP	93	44.529	Ailuropoda_melanoleuca
ENSRNOG00000042823	RGD1561230	93	43.515	ENSACIG00000006015	hdlbpa	93	43.515	Amphilophus_citrinellus
ENSRNOG00000042823	RGD1561230	93	42.429	ENSAOCG00000000300	hdlbpa	93	42.610	Amphiprion_ocellaris
ENSRNOG00000042823	RGD1561230	93	42.429	ENSAPEG00000000522	hdlbpa	99	42.610	Amphiprion_percula
ENSRNOG00000042823	RGD1561230	93	42.610	ENSATEG00000009748	hdlbpa	93	42.610	Anabas_testudineus
ENSRNOG00000042823	RGD1561230	93	44.550	ENSACAG00000001556	HDLBP	92	44.550	Anolis_carolinensis
ENSRNOG00000042823	RGD1561230	97	44.985	ENSANAG00000020545	HDLBP	92	44.985	Aotus_nancymaae
ENSRNOG00000042823	RGD1561230	93	41.798	ENSACLG00000025965	hdlbpa	93	41.798	Astatotilapia_calliptera
ENSRNOG00000042823	RGD1561230	93	42.610	ENSAMXG00000004221	hdlbpa	98	42.610	Astyanax_mexicanus
ENSRNOG00000042823	RGD1561230	97	44.073	ENSBTAG00000004315	HDLBP	92	44.073	Bos_taurus
ENSRNOG00000042823	RGD1561230	97	44.529	ENSCJAG00000006152	HDLBP	92	44.529	Callithrix_jacchus
ENSRNOG00000042823	RGD1561230	97	44.681	ENSCAFG00000012913	HDLBP	99	44.681	Canis_familiaris
ENSRNOG00000042823	RGD1561230	97	44.681	ENSCAFG00020025089	HDLBP	92	44.681	Canis_lupus_dingo
ENSRNOG00000042823	RGD1561230	97	43.769	ENSCHIG00000022364	HDLBP	92	43.769	Capra_hircus
ENSRNOG00000042823	RGD1561230	97	44.985	ENSTSYG00000002379	HDLBP	92	44.985	Carlito_syrichta
ENSRNOG00000042823	RGD1561230	97	43.609	ENSCAPG00000008584	HDLBP	89	43.609	Cavia_aperea
ENSRNOG00000042823	RGD1561230	97	43.609	ENSCPOG00000006297	HDLBP	92	43.609	Cavia_porcellus
ENSRNOG00000042823	RGD1561230	97	41.337	ENSCCAG00000037920	-	87	41.337	Cebus_capucinus
ENSRNOG00000042823	RGD1561230	97	44.833	ENSCCAG00000023361	-	92	44.833	Cebus_capucinus
ENSRNOG00000042823	RGD1561230	97	45.220	ENSCATG00000039363	HDLBP	92	45.220	Cercocebus_atys
ENSRNOG00000042823	RGD1561230	97	43.750	ENSCLAG00000002365	HDLBP	92	43.750	Chinchilla_lanigera
ENSRNOG00000042823	RGD1561230	97	45.372	ENSCSAG00000005781	HDLBP	90	45.372	Chlorocebus_sabaeus
ENSRNOG00000042823	RGD1561230	88	37.651	ENSCHOG00000003882	-	70	36.747	Choloepus_hoffmanni
ENSRNOG00000042823	RGD1561230	97	40.578	ENSCPBG00000002442	HDLBP	91	40.578	Chrysemys_picta_bellii
ENSRNOG00000042823	RGD1561230	96	46.372	ENSCANG00000033571	HDLBP	92	46.372	Colobus_angolensis_palliatus
ENSRNOG00000042823	RGD1561230	69	80.810	ENSCGRG00001010570	4921511C20Rik	99	80.603	Cricetulus_griseus_chok1gshd
ENSRNOG00000042823	RGD1561230	97	44.073	ENSCGRG00001006086	Hdlbp	92	44.073	Cricetulus_griseus_chok1gshd
ENSRNOG00000042823	RGD1561230	94	59.055	ENSCGRG00000015720	Gm382	72	59.055	Cricetulus_griseus_crigri
ENSRNOG00000042823	RGD1561230	97	44.073	ENSCGRG00000014444	Hdlbp	92	44.073	Cricetulus_griseus_crigri
ENSRNOG00000042823	RGD1561230	94	42.278	ENSCSEG00000008853	hdlbpa	94	42.278	Cynoglossus_semilaevis
ENSRNOG00000042823	RGD1561230	93	41.352	ENSCVAG00000017892	hdlbpa	93	41.483	Cyprinodon_variegatus
ENSRNOG00000042823	RGD1561230	93	41.417	ENSDARG00000009830	hdlbpa	91	41.417	Danio_rerio
ENSRNOG00000042823	RGD1561230	97	43.854	ENSDNOG00000006753	HDLBP	92	43.854	Dasypus_novemcinctus
ENSRNOG00000042823	RGD1561230	97	44.377	ENSEASG00005008249	HDLBP	92	44.377	Equus_asinus_asinus
ENSRNOG00000042823	RGD1561230	97	44.377	ENSECAG00000012829	HDLBP	92	44.377	Equus_caballus
ENSRNOG00000042823	RGD1561230	96	49.466	ENSECAG00000028723	-	75	49.466	Equus_caballus
ENSRNOG00000042823	RGD1561230	96	48.936	ENSECAG00000030885	-	70	48.936	Equus_caballus
ENSRNOG00000042823	RGD1561230	97	36.787	ENSEEUG00000014648	HDLBP	99	36.787	Erinaceus_europaeus
ENSRNOG00000042823	RGD1561230	89	42.571	ENSELUG00000010700	hdlbpa	89	42.571	Esox_lucius
ENSRNOG00000042823	RGD1561230	97	44.078	ENSFCAG00000010455	HDLBP	92	44.078	Felis_catus
ENSRNOG00000042823	RGD1561230	97	44.377	ENSFALG00000003437	HDLBP	92	44.377	Ficedula_albicollis
ENSRNOG00000042823	RGD1561230	97	43.531	ENSFDAG00000000456	HDLBP	92	43.531	Fukomys_damarensis
ENSRNOG00000042823	RGD1561230	93	41.956	ENSFHEG00000004848	hdlbpa	91	42.138	Fundulus_heteroclitus
ENSRNOG00000042823	RGD1561230	93	41.352	ENSGMOG00000009932	hdlbpa	96	41.352	Gadus_morhua
ENSRNOG00000042823	RGD1561230	97	43.921	ENSGALG00000005823	HDLBP	92	44.377	Gallus_gallus
ENSRNOG00000042823	RGD1561230	93	41.348	ENSGAFG00000016766	hdlbpa	91	41.348	Gambusia_affinis
ENSRNOG00000042823	RGD1561230	93	41.009	ENSGACG00000004648	hdlbpa	96	41.009	Gasterosteus_aculeatus
ENSRNOG00000042823	RGD1561230	97	43.921	ENSGAGG00000004256	HDLBP	94	43.921	Gopherus_agassizii
ENSRNOG00000042823	RGD1561230	97	44.985	ENSGGOG00000004392	HDLBP	92	44.985	Gorilla_gorilla
ENSRNOG00000042823	RGD1561230	93	41.798	ENSHBUG00000001136	hdlbpa	93	41.798	Haplochromis_burtoni
ENSRNOG00000042823	RGD1561230	97	43.227	ENSHGLG00000004910	HDLBP	92	43.227	Heterocephalus_glaber_female
ENSRNOG00000042823	RGD1561230	97	43.227	ENSHGLG00100013326	HDLBP	92	43.227	Heterocephalus_glaber_male
ENSRNOG00000042823	RGD1561230	94	41.925	ENSHCOG00000014837	hdlbpa	95	41.925	Hippocampus_comes
ENSRNOG00000042823	RGD1561230	52	43.446	ENSIPUG00000013177	-	91	43.446	Ictalurus_punctatus
ENSRNOG00000042823	RGD1561230	93	42.520	ENSIPUG00000013088	hdlbp	92	42.520	Ictalurus_punctatus
ENSRNOG00000042823	RGD1561230	97	43.683	ENSSTOG00000013331	HDLBP	92	43.683	Ictidomys_tridecemlineatus
ENSRNOG00000042823	RGD1561230	97	44.225	ENSJJAG00000003596	Hdlbp	92	44.225	Jaculus_jaculus
ENSRNOG00000042823	RGD1561230	85	51.568	ENSJJAG00000013712	-	67	51.568	Jaculus_jaculus
ENSRNOG00000042823	RGD1561230	94	41.030	ENSKMAG00000007571	hdlbpa	91	41.213	Kryptolebias_marmoratus
ENSRNOG00000042823	RGD1561230	94	41.705	ENSLBEG00000027461	hdlbpa	93	41.886	Labrus_bergylta
ENSRNOG00000042823	RGD1561230	96	45.008	ENSLACG00000003592	HDLBP	93	45.008	Latimeria_chalumnae
ENSRNOG00000042823	RGD1561230	93	41.981	ENSLOCG00000006278	hdlbpa	91	41.981	Lepisosteus_oculatus
ENSRNOG00000042823	RGD1561230	97	44.529	ENSLAFG00000014826	HDLBP	92	44.529	Loxodonta_africana
ENSRNOG00000042823	RGD1561230	97	45.524	ENSMFAG00000033641	HDLBP	92	45.524	Macaca_fascicularis
ENSRNOG00000042823	RGD1561230	97	45.137	ENSMMUG00000004730	HDLBP	92	45.137	Macaca_mulatta
ENSRNOG00000042823	RGD1561230	97	45.220	ENSMNEG00000024260	HDLBP	92	45.220	Macaca_nemestrina
ENSRNOG00000042823	RGD1561230	97	45.220	ENSMLEG00000042734	HDLBP	92	45.220	Mandrillus_leucophaeus
ENSRNOG00000042823	RGD1561230	93	42.114	ENSMAMG00000008611	hdlbpa	93	42.047	Mastacembelus_armatus
ENSRNOG00000042823	RGD1561230	93	41.798	ENSMZEG00005009513	hdlbpa	93	41.798	Maylandia_zebra
ENSRNOG00000042823	RGD1561230	97	43.769	ENSMGAG00000003686	HDLBP	98	44.225	Meleagris_gallopavo
ENSRNOG00000042823	RGD1561230	97	44.377	ENSMAUG00000017743	Hdlbp	92	44.377	Mesocricetus_auratus
ENSRNOG00000042823	RGD1561230	97	43.465	ENSMICG00000004569	HDLBP	92	43.465	Microcebus_murinus
ENSRNOG00000042823	RGD1561230	97	44.377	ENSMOCG00000006679	Hdlbp	92	44.377	Microtus_ochrogaster
ENSRNOG00000042823	RGD1561230	88	42.642	ENSMMOG00000006880	hdlbpa	91	42.642	Mola_mola
ENSRNOG00000042823	RGD1561230	97	43.666	ENSMODG00000016033	HDLBP	93	43.666	Monodelphis_domestica
ENSRNOG00000042823	RGD1561230	93	42.636	ENSMALG00000015095	hdlbpa	93	42.636	Monopterus_albus
ENSRNOG00000042823	RGD1561230	97	44.377	MGP_CAROLIEiJ_G0014456	Hdlbp	92	44.377	Mus_caroli
ENSRNOG00000042823	RGD1561230	69	87.420	MGP_CAROLIEiJ_G0033374	4921511C20Rik	99	87.716	Mus_caroli
ENSRNOG00000042823	RGD1561230	94	56.535	MGP_CAROLIEiJ_G0033373	Gm382	78	56.535	Mus_caroli
ENSRNOG00000042823	RGD1561230	69	87.420	ENSMUSG00000049815	4921511C20Rik	99	87.716	Mus_musculus
ENSRNOG00000042823	RGD1561230	97	44.529	ENSMUSG00000034088	Hdlbp	92	44.529	Mus_musculus
ENSRNOG00000042823	RGD1561230	94	56.693	ENSMUSG00000062791	Gm382	72	56.693	Mus_musculus
ENSRNOG00000042823	RGD1561230	94	56.693	MGP_PahariEiJ_G0031913	Gm382	78	56.693	Mus_pahari
ENSRNOG00000042823	RGD1561230	69	88.273	MGP_PahariEiJ_G0031914	4921511C20Rik	99	88.362	Mus_pahari
ENSRNOG00000042823	RGD1561230	97	44.377	MGP_PahariEiJ_G0027692	Hdlbp	92	44.377	Mus_pahari
ENSRNOG00000042823	RGD1561230	94	56.850	MGP_SPRETEiJ_G0034538	Gm382	72	56.850	Mus_spretus
ENSRNOG00000042823	RGD1561230	69	86.994	MGP_SPRETEiJ_G0034539	4921511C20Rik	99	87.284	Mus_spretus
ENSRNOG00000042823	RGD1561230	97	44.377	MGP_SPRETEiJ_G0015260	Hdlbp	92	44.377	Mus_spretus
ENSRNOG00000042823	RGD1561230	97	43.921	ENSMPUG00000000163	HDLBP	92	43.921	Mustela_putorius_furo
ENSRNOG00000042823	RGD1561230	97	44.294	ENSMLUG00000005628	HDLBP	92	44.294	Myotis_lucifugus
ENSRNOG00000042823	RGD1561230	97	44.073	ENSNGAG00000014873	Hdlbp	92	44.073	Nannospalax_galili
ENSRNOG00000042823	RGD1561230	93	42.114	ENSNBRG00000000051	hdlbpa	94	41.798	Neolamprologus_brichardi
ENSRNOG00000042823	RGD1561230	86	39.519	ENSNLEG00000031018	-	84	37.801	Nomascus_leucogenys
ENSRNOG00000042823	RGD1561230	97	45.137	ENSNLEG00000013818	HDLBP	92	45.137	Nomascus_leucogenys
ENSRNOG00000042823	RGD1561230	96	42.553	ENSMEUG00000008427	HDLBP	53	41.573	Notamacropus_eugenii
ENSRNOG00000042823	RGD1561230	97	43.921	ENSOPRG00000011965	-	92	43.921	Ochotona_princeps
ENSRNOG00000042823	RGD1561230	97	43.759	ENSODEG00000012313	-	92	43.759	Octodon_degus
ENSRNOG00000042823	RGD1561230	97	42.683	ENSODEG00000017391	-	93	42.683	Octodon_degus
ENSRNOG00000042823	RGD1561230	93	41.798	ENSONIG00000019272	hdlbpa	93	42.229	Oreochromis_niloticus
ENSRNOG00000042823	RGD1561230	97	44.901	ENSOANG00000011759	-	91	44.901	Ornithorhynchus_anatinus
ENSRNOG00000042823	RGD1561230	97	43.769	ENSOCUG00000012667	HDLBP	92	43.769	Oryctolagus_cuniculus
ENSRNOG00000042823	RGD1561230	93	41.277	ENSORLG00000002226	hdlbpa	93	41.641	Oryzias_latipes
ENSRNOG00000042823	RGD1561230	93	41.589	ENSORLG00020007905	hdlbpa	93	41.950	Oryzias_latipes_hni
ENSRNOG00000042823	RGD1561230	93	41.277	ENSORLG00015004126	hdlbpa	93	41.641	Oryzias_latipes_hsok
ENSRNOG00000042823	RGD1561230	93	38.245	ENSOMEG00000000247	hdlbpa	93	38.245	Oryzias_melastigma
ENSRNOG00000042823	RGD1561230	97	44.917	ENSOGAG00000000738	HDLBP	92	44.917	Otolemur_garnettii
ENSRNOG00000042823	RGD1561230	97	42.470	ENSOARG00000017870	HDLBP	92	42.470	Ovis_aries
ENSRNOG00000042823	RGD1561230	97	44.833	ENSPPAG00000023318	HDLBP	92	44.833	Pan_paniscus
ENSRNOG00000042823	RGD1561230	97	44.377	ENSPPRG00000010215	HDLBP	92	44.377	Panthera_pardus
ENSRNOG00000042823	RGD1561230	97	43.505	ENSPTIG00000009328	HDLBP	91	43.505	Panthera_tigris_altaica
ENSRNOG00000042823	RGD1561230	97	44.985	ENSPTRG00000013121	HDLBP	92	44.985	Pan_troglodytes
ENSRNOG00000042823	RGD1561230	97	45.220	ENSPANG00000011832	HDLBP	92	45.220	Papio_anubis
ENSRNOG00000042823	RGD1561230	94	41.213	ENSPKIG00000002392	hdlbpa	91	41.213	Paramormyrops_kingsleyae
ENSRNOG00000042823	RGD1561230	87	46.182	ENSPSIG00000010068	HDLBP	93	46.182	Pelodiscus_sinensis
ENSRNOG00000042823	RGD1561230	94	41.615	ENSPMGG00000002102	hdlbpa	91	41.615	Periophthalmus_magnuspinnatus
ENSRNOG00000042823	RGD1561230	97	44.529	ENSPEMG00000017704	Hdlbp	92	44.529	Peromyscus_maniculatus_bairdii
ENSRNOG00000042823	RGD1561230	96	43.902	ENSPCIG00000015375	HDLBP	88	44.055	Phascolarctos_cinereus
ENSRNOG00000042823	RGD1561230	96	41.509	ENSPFOG00000000236	hdlbpa	93	41.509	Poecilia_formosa
ENSRNOG00000042823	RGD1561230	91	44.092	ENSPLAG00000006033	hdlbpa	93	44.288	Poecilia_latipinna
ENSRNOG00000042823	RGD1561230	96	41.325	ENSPMEG00000006627	hdlbpa	93	41.509	Poecilia_mexicana
ENSRNOG00000042823	RGD1561230	94	35.455	ENSPREG00000014450	hdlbpa	93	35.455	Poecilia_reticulata
ENSRNOG00000042823	RGD1561230	97	44.985	ENSPPYG00000013351	HDLBP	92	44.985	Pongo_abelii
ENSRNOG00000042823	RGD1561230	92	47.143	ENSPCAG00000011136	HDLBP	67	47.143	Procavia_capensis
ENSRNOG00000042823	RGD1561230	97	43.921	ENSPCOG00000021622	HDLBP	91	43.921	Propithecus_coquereli
ENSRNOG00000042823	RGD1561230	97	43.694	ENSPVAG00000000555	HDLBP	92	43.694	Pteropus_vampyrus
ENSRNOG00000042823	RGD1561230	93	41.798	ENSPNYG00000020753	hdlbpa	93	41.798	Pundamilia_nyererei
ENSRNOG00000042823	RGD1561230	93	42.790	ENSPNAG00000029610	hdlbpa	91	42.790	Pygocentrus_nattereri
ENSRNOG00000042823	RGD1561230	97	44.978	ENSRBIG00000041381	HDLBP	92	44.978	Rhinopithecus_bieti
ENSRNOG00000042823	RGD1561230	97	44.978	ENSRROG00000034263	HDLBP	92	44.978	Rhinopithecus_roxellana
ENSRNOG00000042823	RGD1561230	97	43.778	ENSSBOG00000029714	-	89	43.778	Saimiri_boliviensis_boliviensis
ENSRNOG00000042823	RGD1561230	96	40.701	ENSSBOG00000033067	-	69	40.701	Saimiri_boliviensis_boliviensis
ENSRNOG00000042823	RGD1561230	97	44.833	ENSSHAG00000012422	HDLBP	93	44.833	Sarcophilus_harrisii
ENSRNOG00000042823	RGD1561230	93	41.732	ENSSFOG00015018627	hdlbp	93	41.732	Scleropages_formosus
ENSRNOG00000042823	RGD1561230	93	42.429	ENSSMAG00000002382	hdlbpa	93	42.610	Scophthalmus_maximus
ENSRNOG00000042823	RGD1561230	93	42.610	ENSSDUG00000022258	hdlbpa	93	42.610	Seriola_dumerili
ENSRNOG00000042823	RGD1561230	93	42.453	ENSSLDG00000004437	hdlbpa	93	42.453	Seriola_lalandi_dorsalis
ENSRNOG00000042823	RGD1561230	97	40.701	ENSSARG00000012639	HDLBP	60	40.701	Sorex_araneus
ENSRNOG00000042823	RGD1561230	97	43.928	ENSSPUG00000009182	HDLBP	94	43.928	Sphenodon_punctatus
ENSRNOG00000042823	RGD1561230	93	42.744	ENSSPAG00000009145	hdlbpa	93	42.925	Stegastes_partitus
ENSRNOG00000042823	RGD1561230	97	43.009	ENSSSCG00000016379	HDLBP	99	43.009	Sus_scrofa
ENSRNOG00000042823	RGD1561230	87	45.435	ENSTGUG00000006189	HDLBP	90	45.652	Taeniopygia_guttata
ENSRNOG00000042823	RGD1561230	97	40.845	ENSTRUG00000012148	hdlbpa	95	40.845	Takifugu_rubripes
ENSRNOG00000042823	RGD1561230	84	43.576	ENSTNIG00000004185	hdlbpa	90	43.576	Tetraodon_nigroviridis
ENSRNOG00000042823	RGD1561230	92	52.308	ENSTBEG00000001860	HDLBP	61	52.308	Tupaia_belangeri
ENSRNOG00000042823	RGD1561230	93	45.202	ENSTTRG00000015251	HDLBP	68	45.202	Tursiops_truncatus
ENSRNOG00000042823	RGD1561230	97	44.529	ENSUAMG00000018383	HDLBP	92	46.000	Ursus_americanus
ENSRNOG00000042823	RGD1561230	97	44.529	ENSUMAG00000010539	HDLBP	93	44.529	Ursus_maritimus
ENSRNOG00000042823	RGD1561230	86	50.341	ENSVPAG00000003112	HDLBP	69	50.341	Vicugna_pacos
ENSRNOG00000042823	RGD1561230	95	46.780	ENSVVUG00000022797	HDLBP	91	45.818	Vulpes_vulpes
ENSRNOG00000042823	RGD1561230	96	42.744	ENSXETG00000012164	hdlbp	90	42.744	Xenopus_tropicalis
ENSRNOG00000042823	RGD1561230	96	40.852	ENSXCOG00000005943	hdlbpa	94	40.852	Xiphophorus_couchianus
ENSRNOG00000042823	RGD1561230	96	40.852	ENSXMAG00000003787	hdlbpa	93	41.038	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function