EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000042951 (Gene tree)
Gene ID: 300944
Gene Symbol: Xrn1
Alias: LOC300944|RGD1309713
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 104542 bases
Position: chr8:103774358-103878899
Accession: 1309713
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000014481	XRN_N	PF03159.18	3.1e-96	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000014481	-	5526	XM_006243594	ENSRNOP00000014481	1723 (aa)	XP_006243656	D4ABN8

Gene Model

Click here to download ENSRNOG00000042951's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03008	Ribosome biogenesis in eukaryotes	KEGG
rno03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000042951's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000042951	Xrn1	100	86.828	ENSG00000114127	XRN1	100	98.788	Homo_sapiens
ENSRNOG00000042951	Xrn1	93	72.861	ENSAPOG00000000622	xrn1	93	77.542	Acanthochromis_polyacanthus
ENSRNOG00000042951	Xrn1	100	88.639	ENSAMEG00000012538	XRN1	100	88.754	Ailuropoda_melanoleuca
ENSRNOG00000042951	Xrn1	93	72.033	ENSACIG00000001057	xrn1	98	72.172	Amphilophus_citrinellus
ENSRNOG00000042951	Xrn1	100	60.440	ENSAOCG00000014097	xrn1	95	68.110	Amphiprion_ocellaris
ENSRNOG00000042951	Xrn1	100	59.711	ENSAPEG00000006620	xrn1	91	72.458	Amphiprion_percula
ENSRNOG00000042951	Xrn1	93	70.963	ENSATEG00000009752	xrn1	100	70.929	Anabas_testudineus
ENSRNOG00000042951	Xrn1	99	74.985	ENSAPLG00000004905	XRN1	100	74.753	Anas_platyrhynchos
ENSRNOG00000042951	Xrn1	100	72.425	ENSACAG00000004985	XRN1	100	72.032	Anolis_carolinensis
ENSRNOG00000042951	Xrn1	100	87.291	ENSANAG00000029013	XRN1	99	93.645	Aotus_nancymaae
ENSRNOG00000042951	Xrn1	100	59.989	ENSACLG00000004806	xrn1	99	60.034	Astatotilapia_calliptera
ENSRNOG00000042951	Xrn1	99	60.276	ENSAMXG00000019370	xrn1	95	94.175	Astyanax_mexicanus
ENSRNOG00000042951	Xrn1	100	86.165	ENSBTAG00000011524	XRN1	100	86.165	Bos_taurus
ENSRNOG00000042951	Xrn1	70	39.011	WBGene00012730	xrn-1	83	39.127	Caenorhabditis_elegans
ENSRNOG00000042951	Xrn1	100	87.002	ENSCJAG00000001872	XRN1	100	87.002	Callithrix_jacchus
ENSRNOG00000042951	Xrn1	100	88.966	ENSCAFG00000007783	XRN1	100	89.081	Canis_familiaris
ENSRNOG00000042951	Xrn1	100	88.966	ENSCAFG00020009120	XRN1	99	91.325	Canis_lupus_dingo
ENSRNOG00000042951	Xrn1	99	88.246	ENSCHIG00000019192	XRN1	99	88.246	Capra_hircus
ENSRNOG00000042951	Xrn1	100	87.413	ENSTSYG00000002705	XRN1	100	87.413	Carlito_syrichta
ENSRNOG00000042951	Xrn1	55	75.788	ENSCAPG00000004604	-	99	75.788	Cavia_aperea
ENSRNOG00000042951	Xrn1	100	87.406	ENSCCAG00000034800	XRN1	99	95.563	Cebus_capucinus
ENSRNOG00000042951	Xrn1	100	87.522	ENSCATG00000041794	XRN1	100	87.637	Cercocebus_atys
ENSRNOG00000042951	Xrn1	100	86.455	ENSCLAG00000001451	XRN1	99	94.612	Chinchilla_lanigera
ENSRNOG00000042951	Xrn1	100	86.812	ENSCSAG00000011265	XRN1	100	86.927	Chlorocebus_sabaeus
ENSRNOG00000042951	Xrn1	56	98.701	ENSCHOG00000013961	-	59	98.701	Choloepus_hoffmanni
ENSRNOG00000042951	Xrn1	68	50.749	ENSCSAVG00000008584	-	87	50.649	Ciona_savignyi
ENSRNOG00000042951	Xrn1	100	87.348	ENSCANG00000037495	XRN1	99	95.563	Colobus_angolensis_palliatus
ENSRNOG00000042951	Xrn1	100	92.241	ENSCGRG00001019411	Xrn1	99	97.940	Cricetulus_griseus_chok1gshd
ENSRNOG00000042951	Xrn1	100	92.241	ENSCGRG00000012464	Xrn1	99	97.940	Cricetulus_griseus_crigri
ENSRNOG00000042951	Xrn1	91	67.152	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSRNOG00000042951	Xrn1	66	70.547	ENSCVAG00000013089	xrn1	99	71.869	Cyprinodon_variegatus
ENSRNOG00000042951	Xrn1	99	62.307	ENSDARG00000091652	xrn1	98	80.591	Danio_rerio
ENSRNOG00000042951	Xrn1	100	85.821	ENSDORG00000013833	Xrn1	100	85.821	Dipodomys_ordii
ENSRNOG00000042951	Xrn1	74	39.582	FBgn0020261	pcm	76	39.492	Drosophila_melanogaster
ENSRNOG00000042951	Xrn1	86	94.595	ENSETEG00000003978	XRN1	88	94.355	Echinops_telfairi
ENSRNOG00000042951	Xrn1	100	88.330	ENSEASG00005002687	XRN1	99	94.929	Equus_asinus_asinus
ENSRNOG00000042951	Xrn1	100	86.124	ENSECAG00000008301	XRN1	100	86.239	Equus_caballus
ENSRNOG00000042951	Xrn1	92	81.232	ENSEEUG00000011323	XRN1	92	81.232	Erinaceus_europaeus
ENSRNOG00000042951	Xrn1	100	60.889	ENSELUG00000000169	xrn1	100	60.157	Esox_lucius
ENSRNOG00000042951	Xrn1	100	82.852	ENSFCAG00000027589	XRN1	99	93.626	Felis_catus
ENSRNOG00000042951	Xrn1	100	73.989	ENSFALG00000007021	XRN1	100	73.708	Ficedula_albicollis
ENSRNOG00000042951	Xrn1	100	87.205	ENSFDAG00000020494	XRN1	99	93.978	Fukomys_damarensis
ENSRNOG00000042951	Xrn1	82	67.950	ENSGMOG00000006396	xrn1	83	67.950	Gadus_morhua
ENSRNOG00000042951	Xrn1	100	74.226	ENSGALG00000002706	XRN1	100	73.960	Gallus_gallus
ENSRNOG00000042951	Xrn1	100	60.262	ENSGACG00000014328	xrn1	100	59.921	Gasterosteus_aculeatus
ENSRNOG00000042951	Xrn1	95	77.155	ENSGAGG00000017535	XRN1	99	76.974	Gopherus_agassizii
ENSRNOG00000042951	Xrn1	100	87.175	ENSGGOG00000008047	XRN1	100	87.175	Gorilla_gorilla
ENSRNOG00000042951	Xrn1	94	70.285	ENSHBUG00000005908	xrn1	98	73.306	Haplochromis_burtoni
ENSRNOG00000042951	Xrn1	100	87.730	ENSHGLG00000014476	XRN1	99	94.770	Heterocephalus_glaber_female
ENSRNOG00000042951	Xrn1	100	87.788	ENSHGLG00100015130	XRN1	99	94.770	Heterocephalus_glaber_male
ENSRNOG00000042951	Xrn1	94	70.221	ENSHCOG00000014062	xrn1	99	70.221	Hippocampus_comes
ENSRNOG00000042951	Xrn1	99	62.385	ENSIPUG00000015229	xrn1	99	62.350	Ictalurus_punctatus
ENSRNOG00000042951	Xrn1	100	89.145	ENSSTOG00000013552	XRN1	99	95.404	Ictidomys_tridecemlineatus
ENSRNOG00000042951	Xrn1	98	86.686	ENSJJAG00000010863	Xrn1	99	93.548	Jaculus_jaculus
ENSRNOG00000042951	Xrn1	100	59.208	ENSKMAG00000021356	xrn1	94	75.738	Kryptolebias_marmoratus
ENSRNOG00000042951	Xrn1	100	59.502	ENSLBEG00000018656	xrn1	97	96.117	Labrus_bergylta
ENSRNOG00000042951	Xrn1	100	68.597	ENSLACG00000009020	XRN1	100	68.427	Latimeria_chalumnae
ENSRNOG00000042951	Xrn1	100	64.525	ENSLOCG00000007944	xrn1	100	64.298	Lepisosteus_oculatus
ENSRNOG00000042951	Xrn1	62	93.545	ENSLAFG00000015426	XRN1	100	93.545	Loxodonta_africana
ENSRNOG00000042951	Xrn1	100	87.579	ENSMFAG00000032599	XRN1	100	87.695	Macaca_fascicularis
ENSRNOG00000042951	Xrn1	100	87.579	ENSMMUG00000014038	XRN1	100	87.695	Macaca_mulatta
ENSRNOG00000042951	Xrn1	100	87.406	ENSMNEG00000034217	XRN1	100	87.522	Macaca_nemestrina
ENSRNOG00000042951	Xrn1	92	71.327	ENSMAMG00000013219	xrn1	94	75.670	Mastacembelus_armatus
ENSRNOG00000042951	Xrn1	100	59.830	ENSMZEG00005015099	xrn1	99	59.921	Maylandia_zebra
ENSRNOG00000042951	Xrn1	99	74.012	ENSMGAG00000006333	XRN1	100	73.736	Meleagris_gallopavo
ENSRNOG00000042951	Xrn1	100	86.916	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSRNOG00000042951	Xrn1	57	96.513	ENSMOCG00000008665	Xrn1	99	96.513	Microtus_ochrogaster
ENSRNOG00000042951	Xrn1	100	77.702	ENSMODG00000021236	XRN1	100	77.702	Monodelphis_domestica
ENSRNOG00000042951	Xrn1	100	57.062	ENSMALG00000004098	xrn1	100	57.127	Monopterus_albus
ENSRNOG00000042951	Xrn1	96	97.472	MGP_CAROLIEiJ_G0032535	Xrn1	100	100.000	Mus_caroli
ENSRNOG00000042951	Xrn1	100	94.036	ENSMUSG00000032410	Xrn1	100	100.000	Mus_musculus
ENSRNOG00000042951	Xrn1	100	93.631	MGP_PahariEiJ_G0015404	Xrn1	100	100.000	Mus_pahari
ENSRNOG00000042951	Xrn1	100	93.978	MGP_SPRETEiJ_G0033678	Xrn1	100	100.000	Mus_spretus
ENSRNOG00000042951	Xrn1	100	86.697	ENSMPUG00000012040	XRN1	100	86.812	Mustela_putorius_furo
ENSRNOG00000042951	Xrn1	100	86.655	ENSMLUG00000016885	XRN1	100	86.655	Myotis_lucifugus
ENSRNOG00000042951	Xrn1	57	90.967	ENSNGAG00000023964	Xrn1	99	90.967	Nannospalax_galili
ENSRNOG00000042951	Xrn1	100	87.406	ENSNLEG00000004726	XRN1	100	87.522	Nomascus_leucogenys
ENSRNOG00000042951	Xrn1	71	98.969	ENSMEUG00000014473	-	73	99.029	Notamacropus_eugenii
ENSRNOG00000042951	Xrn1	79	82.775	ENSOPRG00000007337	-	78	82.775	Ochotona_princeps
ENSRNOG00000042951	Xrn1	100	61.600	ENSONIG00000016673	xrn1	99	63.843	Oreochromis_niloticus
ENSRNOG00000042951	Xrn1	92	74.549	ENSOANG00000006735	XRN1	100	74.549	Ornithorhynchus_anatinus
ENSRNOG00000042951	Xrn1	100	86.869	ENSOCUG00000001861	XRN1	100	86.869	Oryctolagus_cuniculus
ENSRNOG00000042951	Xrn1	100	60.637	ENSORLG00000013005	xrn1	100	59.731	Oryzias_latipes
ENSRNOG00000042951	Xrn1	94	72.320	ENSORLG00020005559	xrn1	97	72.218	Oryzias_latipes_hni
ENSRNOG00000042951	Xrn1	100	60.934	ENSORLG00015022523	xrn1	89	72.058	Oryzias_latipes_hsok
ENSRNOG00000042951	Xrn1	90	72.883	ENSOMEG00000015397	xrn1	99	72.846	Oryzias_melastigma
ENSRNOG00000042951	Xrn1	100	83.773	ENSOGAG00000000170	XRN1	100	83.773	Otolemur_garnettii
ENSRNOG00000042951	Xrn1	99	87.874	ENSOARG00000006343	XRN1	99	87.874	Ovis_aries
ENSRNOG00000042951	Xrn1	100	86.936	ENSPPAG00000010180	XRN1	100	86.936	Pan_paniscus
ENSRNOG00000042951	Xrn1	100	86.894	ENSPPRG00000007125	XRN1	100	87.009	Panthera_pardus
ENSRNOG00000042951	Xrn1	100	86.836	ENSPTIG00000021081	XRN1	100	86.952	Panthera_tigris_altaica
ENSRNOG00000042951	Xrn1	100	87.052	ENSPTRG00000015482	XRN1	100	87.052	Pan_troglodytes
ENSRNOG00000042951	Xrn1	100	87.579	ENSPANG00000010638	XRN1	100	87.579	Papio_anubis
ENSRNOG00000042951	Xrn1	100	75.200	ENSPSIG00000018050	XRN1	100	75.314	Pelodiscus_sinensis
ENSRNOG00000042951	Xrn1	56	77.708	ENSPMGG00000002648	xrn1	98	78.964	Periophthalmus_magnuspinnatus
ENSRNOG00000042951	Xrn1	57	96.989	ENSPEMG00000020610	Xrn1	99	96.989	Peromyscus_maniculatus_bairdii
ENSRNOG00000042951	Xrn1	64	50.377	ENSPMAG00000002975	xrn1	91	78.161	Petromyzon_marinus
ENSRNOG00000042951	Xrn1	95	86.109	ENSPCIG00000028735	XRN1	99	88.273	Phascolarctos_cinereus
ENSRNOG00000042951	Xrn1	91	62.926	ENSPFOG00000013932	xrn1	97	63.215	Poecilia_formosa
ENSRNOG00000042951	Xrn1	91	62.414	ENSPLAG00000021653	xrn1	97	63.098	Poecilia_latipinna
ENSRNOG00000042951	Xrn1	89	63.514	ENSPMEG00000003076	xrn1	95	63.175	Poecilia_mexicana
ENSRNOG00000042951	Xrn1	95	69.383	ENSPREG00000021147	xrn1	99	69.383	Poecilia_reticulata
ENSRNOG00000042951	Xrn1	100	86.525	ENSPPYG00000014172	XRN1	100	86.525	Pongo_abelii
ENSRNOG00000042951	Xrn1	88	79.315	ENSPCAG00000005638	XRN1	96	79.315	Procavia_capensis
ENSRNOG00000042951	Xrn1	100	87.348	ENSPCOG00000013089	XRN1	99	94.929	Propithecus_coquereli
ENSRNOG00000042951	Xrn1	94	89.861	ENSPVAG00000016265	XRN1	93	89.861	Pteropus_vampyrus
ENSRNOG00000042951	Xrn1	94	70.794	ENSPNYG00000010570	xrn1	98	71.032	Pundamilia_nyererei
ENSRNOG00000042951	Xrn1	99	60.195	ENSPNAG00000023531	xrn1	99	60.253	Pygocentrus_nattereri
ENSRNOG00000042951	Xrn1	100	86.713	ENSRBIG00000041227	XRN1	100	86.771	Rhinopithecus_bieti
ENSRNOG00000042951	Xrn1	66	54.223	YGL173C	XRN1	73	54.223	Saccharomyces_cerevisiae
ENSRNOG00000042951	Xrn1	100	86.944	ENSSBOG00000029561	XRN1	100	86.944	Saimiri_boliviensis_boliviensis
ENSRNOG00000042951	Xrn1	99	77.946	ENSSHAG00000016207	XRN1	100	77.946	Sarcophilus_harrisii
ENSRNOG00000042951	Xrn1	100	60.688	ENSSFOG00015024211	xrn1	100	60.458	Scleropages_formosus
ENSRNOG00000042951	Xrn1	95	70.787	ENSSMAG00000016534	xrn1	98	71.913	Scophthalmus_maximus
ENSRNOG00000042951	Xrn1	88	71.974	ENSSDUG00000010306	xrn1	97	71.974	Seriola_dumerili
ENSRNOG00000042951	Xrn1	93	71.383	ENSSLDG00000021543	xrn1	100	71.383	Seriola_lalandi_dorsalis
ENSRNOG00000042951	Xrn1	65	82.955	ENSSARG00000007741	-	81	82.955	Sorex_araneus
ENSRNOG00000042951	Xrn1	100	75.100	ENSTGUG00000008498	XRN1	100	74.986	Taeniopygia_guttata
ENSRNOG00000042951	Xrn1	94	68.685	ENSTRUG00000004895	xrn1	96	77.399	Takifugu_rubripes
ENSRNOG00000042951	Xrn1	100	57.889	ENSTNIG00000017615	xrn1	100	57.760	Tetraodon_nigroviridis
ENSRNOG00000042951	Xrn1	85	97.305	ENSTBEG00000003256	XRN1	89	85.965	Tupaia_belangeri
ENSRNOG00000042951	Xrn1	100	82.444	ENSTTRG00000012914	XRN1	100	82.444	Tursiops_truncatus
ENSRNOG00000042951	Xrn1	100	87.644	ENSUAMG00000001608	XRN1	99	90.768	Ursus_americanus
ENSRNOG00000042951	Xrn1	100	89.492	ENSUMAG00000013625	XRN1	100	89.607	Ursus_maritimus
ENSRNOG00000042951	Xrn1	100	83.601	ENSVPAG00000004690	XRN1	100	83.716	Vicugna_pacos
ENSRNOG00000042951	Xrn1	100	89.197	ENSVVUG00000024461	XRN1	99	94.929	Vulpes_vulpes
ENSRNOG00000042951	Xrn1	100	66.724	ENSXETG00000000619	xrn1	97	88.441	Xenopus_tropicalis
ENSRNOG00000042951	Xrn1	100	59.683	ENSXCOG00000007917	xrn1	100	59.989	Xiphophorus_couchianus
ENSRNOG00000042951	Xrn1	91	71.232	ENSXMAG00000018320	xrn1	98	71.556	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000932	P-body	22590546.	IDA	Component
GO:0000932	P-body	-	ISO	Component
GO:0000956	nuclear-transcribed mRNA catabolic process	-	ISO	Process
GO:0002151	G-quadruplex RNA binding	-	ISO	Function
GO:0003674	molecular_function	-	ND	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0004534	5'-3' exoribonuclease activity	-	IEA	Function
GO:0004534	5'-3' exoribonuclease activity	-	ISO	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005886	plasma membrane	-	IEA	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0016075	rRNA catabolic process	-	IEA	Process
GO:0016075	rRNA catabolic process	-	ISO	Process
GO:0017148	negative regulation of translation	25797256.	IMP	Process
GO:0030425	dendrite	25797256.	IDA	Component
GO:0033574	response to testosterone	25797256.	IEP	Process
GO:0043025	neuronal cell body	25797256.	IDA	Component
GO:0045202	synapse	25797256.	IDA	Component
GO:0051880	G-quadruplex DNA binding	-	ISO	Function
GO:0071028	nuclear mRNA surveillance	-	IEA	Process
GO:0071028	nuclear mRNA surveillance	-	ISO	Process
GO:0071044	histone mRNA catabolic process	-	IEA	Process
GO:0071044	histone mRNA catabolic process	-	ISO	Process
GO:0071409	cellular response to cycloheximide	25797256.	IEP	Process
GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic	-	IEA	Process
GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic	-	ISO	Process
GO:1905795	cellular response to puromycin	25736288.	IEP	Process