EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000043099 (Gene tree)
Gene ID: 317399
Gene Symbol: Ddx21
Alias: Ddx21a|Ddx21b|LOC317399|LOC361847|MGC112658|MGC124980
Full Name: DExD-box helicase 21
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 19485 bases
Position: chr20:32213148-32232632
Accession: 1307306
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000063494	GUCT	PF08152.12	8.2e-31	1	1
ENSRNOP00000063494	ResIII	PF04851.15	4.5e-08	1	1
ENSRNOP00000063494	DEAD	PF00270.29	7e-46	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000068184	-	4380	XM_008758384	ENSRNOP00000063494	782 (aa)	XP_008756606	Q3B8Q1

Gene Model

Click here to download ENSRNOG00000043099's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000043099's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000043099	Ddx21	77	63.987	ENSRNOG00000000396	Ddx50	98	58.575
ENSRNOG00000043099	Ddx21	100	99.361	ENSRNOG00000048990	AABR07037356.1	100	99.361

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000043099	Ddx21	100	84.097	ENSG00000165732	DDX21	99	87.832	Homo_sapiens
ENSRNOG00000043099	Ddx21	52	73.723	ENSAPOG00000012269	ddx21	75	73.723	Acanthochromis_polyacanthus
ENSRNOG00000043099	Ddx21	100	77.491	ENSAMEG00000017978	DDX21	100	74.326	Ailuropoda_melanoleuca
ENSRNOG00000043099	Ddx21	73	72.117	ENSACIG00000006429	ddx21	85	69.579	Amphilophus_citrinellus
ENSRNOG00000043099	Ddx21	73	70.912	ENSAOCG00000023174	ddx21	99	60.127	Amphiprion_ocellaris
ENSRNOG00000043099	Ddx21	73	70.912	ENSAPEG00000007108	ddx21	99	60.127	Amphiprion_percula
ENSRNOG00000043099	Ddx21	83	66.314	ENSATEG00000022194	ddx21	99	60.459	Anabas_testudineus
ENSRNOG00000043099	Ddx21	78	71.701	ENSAPLG00000013022	-	95	70.465	Anas_platyrhynchos
ENSRNOG00000043099	Ddx21	81	71.226	ENSACAG00000009829	DDX21	79	71.586	Anolis_carolinensis
ENSRNOG00000043099	Ddx21	100	84.097	ENSANAG00000038109	DDX21	94	94.136	Aotus_nancymaae
ENSRNOG00000043099	Ddx21	71	73.599	ENSACLG00000008248	ddx21	88	63.421	Astatotilapia_calliptera
ENSRNOG00000043099	Ddx21	84	64.318	ENSAMXG00000009140	ddx21	94	62.432	Astyanax_mexicanus
ENSRNOG00000043099	Ddx21	100	82.846	ENSBTAG00000014558	DDX21	100	81.599	Bos_taurus
ENSRNOG00000043099	Ddx21	100	83.461	ENSCJAG00000012876	DDX21	100	83.079	Callithrix_jacchus
ENSRNOG00000043099	Ddx21	100	83.650	ENSCAFG00000013791	DDX21	100	82.785	Canis_familiaris
ENSRNOG00000043099	Ddx21	100	62.548	ENSCHIG00000014104	-	92	62.008	Capra_hircus
ENSRNOG00000043099	Ddx21	92	85.417	ENSCHIG00000000248	-	100	83.620	Capra_hircus
ENSRNOG00000043099	Ddx21	100	57.854	ENSCHIG00000006053	-	91	57.417	Capra_hircus
ENSRNOG00000043099	Ddx21	100	83.100	ENSTSYG00000011231	DDX21	100	81.957	Carlito_syrichta
ENSRNOG00000043099	Ddx21	89	72.562	ENSCAPG00000005945	DDX21	97	71.122	Cavia_aperea
ENSRNOG00000043099	Ddx21	100	83.842	ENSCPOG00000015479	DDX21	100	83.609	Cavia_porcellus
ENSRNOG00000043099	Ddx21	100	83.715	ENSCCAG00000026288	DDX21	96	90.936	Cebus_capucinus
ENSRNOG00000043099	Ddx21	94	69.565	ENSCATG00000045019	-	100	66.624	Cercocebus_atys
ENSRNOG00000043099	Ddx21	100	83.206	ENSCATG00000043540	DDX21	100	83.079	Cercocebus_atys
ENSRNOG00000043099	Ddx21	100	82.746	ENSCLAG00000012235	DDX21	100	83.588	Chinchilla_lanigera
ENSRNOG00000043099	Ddx21	100	73.376	ENSCHOG00000000234	DDX21	100	72.427	Choloepus_hoffmanni
ENSRNOG00000043099	Ddx21	84	70.420	ENSCPBG00000019934	-	89	71.341	Chrysemys_picta_bellii
ENSRNOG00000043099	Ddx21	81	72.741	ENSCPBG00000019937	-	86	62.991	Chrysemys_picta_bellii
ENSRNOG00000043099	Ddx21	100	83.588	ENSCANG00000039926	DDX21	100	83.206	Colobus_angolensis_palliatus
ENSRNOG00000043099	Ddx21	94	68.071	ENSCANG00000036110	-	98	66.450	Colobus_angolensis_palliatus
ENSRNOG00000043099	Ddx21	99	87.867	ENSCGRG00001016264	-	99	89.272	Cricetulus_griseus_chok1gshd
ENSRNOG00000043099	Ddx21	100	77.834	ENSCGRG00001017824	-	100	78.117	Cricetulus_griseus_chok1gshd
ENSRNOG00000043099	Ddx21	100	77.962	ENSCGRG00000008450	-	100	78.244	Cricetulus_griseus_crigri
ENSRNOG00000043099	Ddx21	99	87.867	ENSCGRG00000015134	-	99	89.272	Cricetulus_griseus_crigri
ENSRNOG00000043099	Ddx21	69	72.376	ENSCSEG00000013939	ddx21	81	68.631	Cynoglossus_semilaevis
ENSRNOG00000043099	Ddx21	81	67.504	ENSCVAG00000018333	ddx21	84	68.446	Cyprinodon_variegatus
ENSRNOG00000043099	Ddx21	72	72.776	ENSDARG00000063626	ddx21	79	68.701	Danio_rerio
ENSRNOG00000043099	Ddx21	96	81.569	ENSDNOG00000001680	DDX21	99	80.574	Dasypus_novemcinctus
ENSRNOG00000043099	Ddx21	100	78.854	ENSDORG00000002202	Ddx21	100	78.854	Dipodomys_ordii
ENSRNOG00000043099	Ddx21	100	77.086	ENSETEG00000014073	DDX21	100	79.574	Echinops_telfairi
ENSRNOG00000043099	Ddx21	100	81.704	ENSEASG00005015598	DDX21	100	81.305	Equus_asinus_asinus
ENSRNOG00000043099	Ddx21	100	82.868	ENSECAG00000010810	DDX21	100	81.876	Equus_caballus
ENSRNOG00000043099	Ddx21	72	83.451	ENSEEUG00000005959	DDX21	100	74.642	Erinaceus_europaeus
ENSRNOG00000043099	Ddx21	69	73.371	ENSELUG00000018856	ddx21	81	68.621	Esox_lucius
ENSRNOG00000043099	Ddx21	100	84.351	ENSFCAG00000002109	DDX21	100	83.355	Felis_catus
ENSRNOG00000043099	Ddx21	75	67.627	ENSFALG00000013043	-	91	65.293	Ficedula_albicollis
ENSRNOG00000043099	Ddx21	78	72.295	ENSFALG00000013022	-	89	72.480	Ficedula_albicollis
ENSRNOG00000043099	Ddx21	100	83.715	ENSFDAG00000007401	DDX21	100	83.863	Fukomys_damarensis
ENSRNOG00000043099	Ddx21	68	73.596	ENSFHEG00000019089	ddx21	99	58.987	Fundulus_heteroclitus
ENSRNOG00000043099	Ddx21	68	67.664	ENSGMOG00000012354	ddx21	99	63.875	Gadus_morhua
ENSRNOG00000043099	Ddx21	75	72.362	ENSGALG00000004144	-	95	68.148	Gallus_gallus
ENSRNOG00000043099	Ddx21	80	67.091	ENSGALG00000042254	-	86	68.896	Gallus_gallus
ENSRNOG00000043099	Ddx21	75	68.866	ENSGAFG00000003427	ddx21	99	59.490	Gambusia_affinis
ENSRNOG00000043099	Ddx21	68	73.645	ENSGACG00000016060	ddx21	93	68.671	Gasterosteus_aculeatus
ENSRNOG00000043099	Ddx21	87	68.162	ENSGAGG00000022163	-	82	70.229	Gopherus_agassizii
ENSRNOG00000043099	Ddx21	81	70.497	ENSGAGG00000022169	-	100	61.568	Gopherus_agassizii
ENSRNOG00000043099	Ddx21	100	84.097	ENSGGOG00000005065	DDX21	100	83.969	Gorilla_gorilla
ENSRNOG00000043099	Ddx21	71	73.599	ENSHBUG00000017638	ddx21	88	63.497	Haplochromis_burtoni
ENSRNOG00000043099	Ddx21	100	83.694	ENSHGLG00000013902	DDX21	100	84.351	Heterocephalus_glaber_female
ENSRNOG00000043099	Ddx21	100	83.694	ENSHGLG00100015956	DDX21	100	84.351	Heterocephalus_glaber_male
ENSRNOG00000043099	Ddx21	70	72.161	ENSHCOG00000014503	ddx21	81	69.344	Hippocampus_comes
ENSRNOG00000043099	Ddx21	84	65.179	ENSIPUG00000006972	ddx21	83	68.934	Ictalurus_punctatus
ENSRNOG00000043099	Ddx21	100	83.375	ENSSTOG00000011572	DDX21	100	83.375	Ictidomys_tridecemlineatus
ENSRNOG00000043099	Ddx21	100	82.625	ENSJJAG00000014035	Ddx21	100	83.000	Jaculus_jaculus
ENSRNOG00000043099	Ddx21	71	71.067	ENSKMAG00000020766	ddx21	93	62.343	Kryptolebias_marmoratus
ENSRNOG00000043099	Ddx21	75	68.823	ENSLBEG00000001244	ddx21	81	69.391	Labrus_bergylta
ENSRNOG00000043099	Ddx21	78	71.664	ENSLACG00000000658	DDX21	99	72.204	Latimeria_chalumnae
ENSRNOG00000043099	Ddx21	83	65.269	ENSLOCG00000009123	ddx21	99	60.377	Lepisosteus_oculatus
ENSRNOG00000043099	Ddx21	100	80.964	ENSLAFG00000007962	DDX21	100	80.556	Loxodonta_africana
ENSRNOG00000043099	Ddx21	100	83.461	ENSMFAG00000044838	DDX21	95	93.023	Macaca_fascicularis
ENSRNOG00000043099	Ddx21	94	69.241	ENSMFAG00000033536	-	100	66.582	Macaca_fascicularis
ENSRNOG00000043099	Ddx21	100	83.588	ENSMMUG00000001005	DDX21	100	83.206	Macaca_mulatta
ENSRNOG00000043099	Ddx21	94	72.493	ENSMMUG00000032331	-	100	69.543	Macaca_mulatta
ENSRNOG00000043099	Ddx21	100	83.588	ENSMNEG00000032825	DDX21	100	83.206	Macaca_nemestrina
ENSRNOG00000043099	Ddx21	94	69.701	ENSMLEG00000028215	-	100	67.006	Mandrillus_leucophaeus
ENSRNOG00000043099	Ddx21	100	80.534	ENSMLEG00000028940	DDX21	92	92.523	Mandrillus_leucophaeus
ENSRNOG00000043099	Ddx21	80	67.732	ENSMAMG00000019683	ddx21	85	67.732	Mastacembelus_armatus
ENSRNOG00000043099	Ddx21	71	73.599	ENSMZEG00005011618	ddx21	93	63.497	Maylandia_zebra
ENSRNOG00000043099	Ddx21	75	74.074	ENSMGAG00000004298	DDX21	98	71.068	Meleagris_gallopavo
ENSRNOG00000043099	Ddx21	94	90.798	ENSMAUG00000011153	Ddx21	98	88.701	Mesocricetus_auratus
ENSRNOG00000043099	Ddx21	100	83.079	ENSMICG00000015112	-	100	82.443	Microcebus_murinus
ENSRNOG00000043099	Ddx21	100	74.809	ENSMICG00000033371	-	98	76.694	Microcebus_murinus
ENSRNOG00000043099	Ddx21	100	89.655	ENSMOCG00000020855	Ddx21	100	89.655	Microtus_ochrogaster
ENSRNOG00000043099	Ddx21	62	74.066	ENSMMOG00000015938	ddx21	91	74.066	Mola_mola
ENSRNOG00000043099	Ddx21	77	73.941	ENSMODG00000010727	DDX21	100	67.940	Monodelphis_domestica
ENSRNOG00000043099	Ddx21	76	67.399	ENSMALG00000010489	ddx21	90	67.953	Monopterus_albus
ENSRNOG00000043099	Ddx21	100	91.465	MGP_CAROLIEiJ_G0015388	Ddx21	100	91.847	Mus_caroli
ENSRNOG00000043099	Ddx21	100	83.333	ENSMUSG00000020075	Ddx21	100	80.420	Mus_musculus
ENSRNOG00000043099	Ddx21	100	94.768	MGP_SPRETEiJ_G0016199	Ddx21	100	83.437	Mus_spretus
ENSRNOG00000043099	Ddx21	100	81.955	ENSMPUG00000004603	DDX21	100	81.932	Mustela_putorius_furo
ENSRNOG00000043099	Ddx21	99	78.129	ENSMLUG00000023298	DDX21	99	79.609	Myotis_lucifugus
ENSRNOG00000043099	Ddx21	100	86.946	ENSNGAG00000022273	Ddx21	100	88.213	Nannospalax_galili
ENSRNOG00000043099	Ddx21	71	73.599	ENSNBRG00000006198	ddx21	84	69.074	Neolamprologus_brichardi
ENSRNOG00000043099	Ddx21	100	84.224	ENSNLEG00000011591	DDX21	99	87.552	Nomascus_leucogenys
ENSRNOG00000043099	Ddx21	92	75.139	ENSOPRG00000001640	DDX21	100	74.613	Ochotona_princeps
ENSRNOG00000043099	Ddx21	92	67.452	ENSODEG00000012879	-	99	68.094	Octodon_degus
ENSRNOG00000043099	Ddx21	71	73.960	ENSONIG00000005499	ddx21	79	69.388	Oreochromis_niloticus
ENSRNOG00000043099	Ddx21	86	67.883	ENSOANG00000004777	DDX21	99	62.299	Ornithorhynchus_anatinus
ENSRNOG00000043099	Ddx21	82	88.162	ENSOCUG00000002888	DDX21	97	88.162	Oryctolagus_cuniculus
ENSRNOG00000043099	Ddx21	78	68.893	ENSORLG00000010122	ddx21	95	69.489	Oryzias_latipes
ENSRNOG00000043099	Ddx21	71	72.563	ENSORLG00020004409	ddx21	94	69.169	Oryzias_latipes_hni
ENSRNOG00000043099	Ddx21	78	68.730	ENSORLG00015000051	ddx21	95	69.329	Oryzias_latipes_hsok
ENSRNOG00000043099	Ddx21	80	67.727	ENSOMEG00000004523	ddx21	80	68.998	Oryzias_melastigma
ENSRNOG00000043099	Ddx21	77	80.565	ENSOGAG00000031242	-	99	79.288	Otolemur_garnettii
ENSRNOG00000043099	Ddx21	100	70.210	ENSOGAG00000001846	-	90	89.149	Otolemur_garnettii
ENSRNOG00000043099	Ddx21	92	85.576	ENSOARG00000005307	DDX21	100	82.188	Ovis_aries
ENSRNOG00000043099	Ddx21	100	84.224	ENSPPAG00000036670	DDX21	100	84.097	Pan_paniscus
ENSRNOG00000043099	Ddx21	100	84.478	ENSPPRG00000012523	DDX21	100	83.482	Panthera_pardus
ENSRNOG00000043099	Ddx21	100	84.224	ENSPTIG00000007268	DDX21	100	83.227	Panthera_tigris_altaica
ENSRNOG00000043099	Ddx21	100	84.224	ENSPTRG00000002563	DDX21	100	84.097	Pan_troglodytes
ENSRNOG00000043099	Ddx21	94	69.158	ENSPANG00000031334	-	100	66.497	Papio_anubis
ENSRNOG00000043099	Ddx21	100	83.588	ENSPANG00000022140	DDX21	100	83.206	Papio_anubis
ENSRNOG00000043099	Ddx21	85	65.053	ENSPKIG00000014660	ddx21	84	68.404	Paramormyrops_kingsleyae
ENSRNOG00000043099	Ddx21	88	68.331	ENSPSIG00000004724	DDX21	98	68.986	Pelodiscus_sinensis
ENSRNOG00000043099	Ddx21	100	92.209	ENSPEMG00000018513	Ddx21	100	92.866	Peromyscus_maniculatus_bairdii
ENSRNOG00000043099	Ddx21	95	68.504	ENSPCIG00000015505	DDX21	94	70.069	Phascolarctos_cinereus
ENSRNOG00000043099	Ddx21	72	71.303	ENSPFOG00000016196	ddx21	78	67.975	Poecilia_formosa
ENSRNOG00000043099	Ddx21	68	72.128	ENSPLAG00000017849	ddx21	85	68.500	Poecilia_latipinna
ENSRNOG00000043099	Ddx21	72	71.303	ENSPMEG00000014571	ddx21	78	67.818	Poecilia_mexicana
ENSRNOG00000043099	Ddx21	100	83.969	ENSPPYG00000002389	DDX21	100	83.842	Pongo_abelii
ENSRNOG00000043099	Ddx21	88	79.137	ENSPCAG00000016697	DDX21	100	77.986	Procavia_capensis
ENSRNOG00000043099	Ddx21	100	80.407	ENSPCOG00000019284	DDX21	100	79.771	Propithecus_coquereli
ENSRNOG00000043099	Ddx21	100	82.465	ENSPVAG00000009521	DDX21	100	82.383	Pteropus_vampyrus
ENSRNOG00000043099	Ddx21	67	74.046	ENSPNYG00000015566	ddx21	99	67.350	Pundamilia_nyererei
ENSRNOG00000043099	Ddx21	67	73.714	ENSPNAG00000004814	ddx21	80	70.775	Pygocentrus_nattereri
ENSRNOG00000043099	Ddx21	100	76.658	ENSRBIG00000035862	-	100	75.510	Rhinopithecus_bieti
ENSRNOG00000043099	Ddx21	100	83.715	ENSRBIG00000043721	-	100	83.333	Rhinopithecus_bieti
ENSRNOG00000043099	Ddx21	100	83.588	ENSRROG00000033387	DDX21	100	83.206	Rhinopithecus_roxellana
ENSRNOG00000043099	Ddx21	96	63.298	ENSSBOG00000025801	-	97	61.823	Saimiri_boliviensis_boliviensis
ENSRNOG00000043099	Ddx21	88	63.143	ENSSFOG00015014610	ddx21	94	68.438	Scleropages_formosus
ENSRNOG00000043099	Ddx21	68	73.458	ENSSMAG00000003932	ddx21	81	68.750	Scophthalmus_maximus
ENSRNOG00000043099	Ddx21	70	73.140	ENSSDUG00000021420	ddx21	81	69.968	Seriola_dumerili
ENSRNOG00000043099	Ddx21	69	73.297	ENSSLDG00000025665	ddx21	95	70.292	Seriola_lalandi_dorsalis
ENSRNOG00000043099	Ddx21	69	63.636	ENSSARG00000014024	-	69	68.874	Sorex_araneus
ENSRNOG00000043099	Ddx21	79	72.609	ENSSPUG00000004088	DDX21	83	73.744	Sphenodon_punctatus
ENSRNOG00000043099	Ddx21	69	73.889	ENSSPAG00000013142	ddx21	99	60.433	Stegastes_partitus
ENSRNOG00000043099	Ddx21	100	83.482	ENSSSCG00000010247	DDX21	100	82.614	Sus_scrofa
ENSRNOG00000043099	Ddx21	68	79.925	ENSTGUG00000003810	-	89	73.194	Taeniopygia_guttata
ENSRNOG00000043099	Ddx21	69	74.815	ENSTRUG00000017570	ddx21	82	70.820	Takifugu_rubripes
ENSRNOG00000043099	Ddx21	74	71.875	ENSTNIG00000013798	ddx21	98	70.736	Tetraodon_nigroviridis
ENSRNOG00000043099	Ddx21	86	77.761	ENSTBEG00000002310	DDX21	100	73.511	Tupaia_belangeri
ENSRNOG00000043099	Ddx21	100	81.472	ENSTTRG00000016398	DDX21	100	80.482	Tursiops_truncatus
ENSRNOG00000043099	Ddx21	100	84.171	ENSUMAG00000007735	DDX21	100	83.312	Ursus_maritimus
ENSRNOG00000043099	Ddx21	86	84.118	ENSVPAG00000000627	DDX21	99	83.700	Vicugna_pacos
ENSRNOG00000043099	Ddx21	100	82.286	ENSVVUG00000020486	DDX21	100	81.305	Vulpes_vulpes
ENSRNOG00000043099	Ddx21	74	67.474	ENSXCOG00000009654	ddx21	93	60.478	Xiphophorus_couchianus
ENSRNOG00000043099	Ddx21	72	70.599	ENSXMAG00000008199	ddx21	99	59.487	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0002735	positive regulation of myeloid dendritic cell cytokine production	-	ISO	Process
GO:0003725	double-stranded RNA binding	-	ISO	Function
GO:0004004	ATP-dependent RNA helicase activity	-	ISO	Function
GO:0004004	ATP-dependent RNA helicase activity	-	ISS	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005730	nucleolus	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005739	mitochondrion	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005829	cytosol	-	ISS	Component
GO:0006364	rRNA processing	-	IEA	Process
GO:0006366	transcription by RNA polymerase II	-	ISO	Process
GO:0006366	transcription by RNA polymerase II	-	ISS	Process
GO:0009615	response to virus	-	ISO	Process
GO:0019843	rRNA binding	-	ISO	Function
GO:0019843	rRNA binding	-	ISS	Function
GO:0030515	snoRNA binding	-	ISO	Function
GO:0030515	snoRNA binding	-	ISS	Function
GO:0035198	miRNA binding	-	ISO	Function
GO:0035198	miRNA binding	-	ISS	Function
GO:0042802	identical protein binding	-	ISO	Function
GO:0043123	positive regulation of I-kappaB kinase/NF-kappaB signaling	-	ISO	Process
GO:0043123	positive regulation of I-kappaB kinase/NF-kappaB signaling	-	ISS	Process
GO:0043330	response to exogenous dsRNA	-	ISO	Process
GO:0045087	innate immune response	-	IEA	Process
GO:0051607	defense response to virus	-	IEA	Process
GO:0097322	7SK snRNA binding	-	ISO	Function
GO:0097322	7SK snRNA binding	-	ISS	Function