EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000043189 (Gene tree)
Gene ID: 366012
Gene Symbol: Trub2
Alias: LOC366012
Full Name: TruB pseudouridine synthase family member 2
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 10263 bases
Position: chr3:8338484-8348746
Accession: 1359394
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000063203	TruB_N	PF01509.18	2.3e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000064638	-	1295	-	ENSRNOP00000063203	323 (aa)	-	Q5XFW2

Gene Model

Click here to download ENSRNOG00000043189's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000043189's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000043189	Trub2	64	31.905	ENSRNOG00000017321	Trub1	64	31.839

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000043189	Trub2	98	79.560	ENSG00000167112	TRUB2	96	79.560	Homo_sapiens
ENSRNOG00000043189	Trub2	86	40.433	ENSAPOG00000018284	-	76	56.934	Acanthochromis_polyacanthus
ENSRNOG00000043189	Trub2	63	56.585	ENSAPOG00000015733	trub2	74	56.585	Acanthochromis_polyacanthus
ENSRNOG00000043189	Trub2	98	79.811	ENSAMEG00000015395	TRUB2	95	79.811	Ailuropoda_melanoleuca
ENSRNOG00000043189	Trub2	86	53.047	ENSACIG00000016500	trub2	84	53.047	Amphilophus_citrinellus
ENSRNOG00000043189	Trub2	86	55.914	ENSAOCG00000002330	trub2	82	55.914	Amphiprion_ocellaris
ENSRNOG00000043189	Trub2	86	56.272	ENSAPEG00000013177	trub2	82	56.272	Amphiprion_percula
ENSRNOG00000043189	Trub2	86	54.643	ENSATEG00000011371	trub2	88	54.643	Anabas_testudineus
ENSRNOG00000043189	Trub2	92	57.047	ENSAPLG00000009254	TRUB2	96	57.860	Anas_platyrhynchos
ENSRNOG00000043189	Trub2	96	60.772	ENSACAG00000007331	TRUB2	91	60.772	Anolis_carolinensis
ENSRNOG00000043189	Trub2	97	82.428	ENSANAG00000036234	TRUB2	100	82.428	Aotus_nancymaae
ENSRNOG00000043189	Trub2	86	53.405	ENSACLG00000010793	trub2	84	53.405	Astatotilapia_calliptera
ENSRNOG00000043189	Trub2	91	54.237	ENSAMXG00000031679	trub2	84	54.237	Astyanax_mexicanus
ENSRNOG00000043189	Trub2	51	79.268	ENSBTAG00000004663	TRUB2	100	79.268	Bos_taurus
ENSRNOG00000043189	Trub2	51	81.212	ENSBTAG00000055269	-	74	81.212	Bos_taurus
ENSRNOG00000043189	Trub2	99	82.132	ENSCJAG00000020009	TRUB2	96	82.132	Callithrix_jacchus
ENSRNOG00000043189	Trub2	98	81.132	ENSCAFG00000020068	TRUB2	96	81.132	Canis_familiaris
ENSRNOG00000043189	Trub2	55	82.022	ENSCAFG00020017325	-	100	82.022	Canis_lupus_dingo
ENSRNOG00000043189	Trub2	98	80.818	ENSCHIG00000021160	TRUB2	96	80.818	Capra_hircus
ENSRNOG00000043189	Trub2	98	83.596	ENSTSYG00000034163	TRUB2	95	83.596	Carlito_syrichta
ENSRNOG00000043189	Trub2	87	79.286	ENSCAPG00000000223	TRUB2	94	79.286	Cavia_aperea
ENSRNOG00000043189	Trub2	98	79.811	ENSCPOG00000013535	TRUB2	95	79.811	Cavia_porcellus
ENSRNOG00000043189	Trub2	97	77.955	ENSCCAG00000028463	-	94	77.955	Cebus_capucinus
ENSRNOG00000043189	Trub2	99	80.564	ENSCCAG00000026531	-	97	80.564	Cebus_capucinus
ENSRNOG00000043189	Trub2	98	80.062	ENSCATG00000038234	TRUB2	96	80.062	Cercocebus_atys
ENSRNOG00000043189	Trub2	98	81.388	ENSCLAG00000001702	TRUB2	97	81.388	Chinchilla_lanigera
ENSRNOG00000043189	Trub2	98	75.862	ENSCSAG00000014117	TRUB2	96	75.862	Chlorocebus_sabaeus
ENSRNOG00000043189	Trub2	98	79.495	ENSCHOG00000001555	TRUB2	95	79.495	Choloepus_hoffmanni
ENSRNOG00000043189	Trub2	92	62.876	ENSCPBG00000025186	TRUB2	88	62.876	Chrysemys_picta_bellii
ENSRNOG00000043189	Trub2	89	31.186	ENSCSAVG00000003930	-	90	31.186	Ciona_savignyi
ENSRNOG00000043189	Trub2	98	72.642	ENSCANG00000016135	TRUB2	95	72.642	Colobus_angolensis_palliatus
ENSRNOG00000043189	Trub2	98	88.050	ENSCGRG00001024441	Trub2	96	88.764	Cricetulus_griseus_chok1gshd
ENSRNOG00000043189	Trub2	98	88.050	ENSCGRG00000005633	Trub2	96	88.050	Cricetulus_griseus_crigri
ENSRNOG00000043189	Trub2	86	52.688	ENSCSEG00000001331	trub2	83	52.688	Cynoglossus_semilaevis
ENSRNOG00000043189	Trub2	85	53.430	ENSCVAG00000009901	trub2	83	53.430	Cyprinodon_variegatus
ENSRNOG00000043189	Trub2	90	52.234	ENSDARG00000028379	trub2	82	52.234	Danio_rerio
ENSRNOG00000043189	Trub2	98	78.549	ENSDNOG00000045679	-	95	78.549	Dasypus_novemcinctus
ENSRNOG00000043189	Trub2	90	58.219	ENSDNOG00000043967	-	88	58.219	Dasypus_novemcinctus
ENSRNOG00000043189	Trub2	99	80.435	ENSDORG00000016222	Trub2	100	80.435	Dipodomys_ordii
ENSRNOG00000043189	Trub2	93	32.237	FBgn0033060	CG7849	92	32.237	Drosophila_melanogaster
ENSRNOG00000043189	Trub2	92	81.208	ENSETEG00000009114	TRUB2	92	81.208	Echinops_telfairi
ENSRNOG00000043189	Trub2	70	48.684	ENSEBUG00000015723	trub2	82	48.684	Eptatretus_burgeri
ENSRNOG00000043189	Trub2	98	80.818	ENSEASG00005016819	TRUB2	96	80.818	Equus_asinus_asinus
ENSRNOG00000043189	Trub2	98	81.447	ENSECAG00000023520	TRUB2	96	81.447	Equus_caballus
ENSRNOG00000043189	Trub2	100	80.805	ENSEEUG00000008908	TRUB2	98	80.805	Erinaceus_europaeus
ENSRNOG00000043189	Trub2	89	52.145	ENSELUG00000002376	trub2	94	52.145	Esox_lucius
ENSRNOG00000043189	Trub2	93	84.053	ENSFCAG00000005839	TRUB2	94	84.053	Felis_catus
ENSRNOG00000043189	Trub2	85	60.000	ENSFALG00000001364	TRUB2	87	60.727	Ficedula_albicollis
ENSRNOG00000043189	Trub2	98	80.503	ENSFDAG00000021374	TRUB2	96	80.503	Fukomys_damarensis
ENSRNOG00000043189	Trub2	88	48.097	ENSFHEG00000014655	trub2	85	48.097	Fundulus_heteroclitus
ENSRNOG00000043189	Trub2	85	45.290	ENSGMOG00000000981	trub2	92	45.290	Gadus_morhua
ENSRNOG00000043189	Trub2	93	59.406	ENSGALG00000004920	TRUB2	74	59.406	Gallus_gallus
ENSRNOG00000043189	Trub2	86	53.763	ENSGAFG00000010107	trub2	87	51.361	Gambusia_affinis
ENSRNOG00000043189	Trub2	86	53.763	ENSGACG00000001476	trub2	84	53.763	Gasterosteus_aculeatus
ENSRNOG00000043189	Trub2	90	64.948	ENSGAGG00000022872	TRUB2	86	64.948	Gopherus_agassizii
ENSRNOG00000043189	Trub2	98	79.560	ENSGGOG00000014780	TRUB2	96	79.560	Gorilla_gorilla
ENSRNOG00000043189	Trub2	86	54.122	ENSHBUG00000022384	trub2	84	54.122	Haplochromis_burtoni
ENSRNOG00000043189	Trub2	98	79.560	ENSHGLG00000016715	TRUB2	96	79.560	Heterocephalus_glaber_female
ENSRNOG00000043189	Trub2	98	79.560	ENSHGLG00100016548	TRUB2	96	79.560	Heterocephalus_glaber_male
ENSRNOG00000043189	Trub2	92	52.013	ENSHCOG00000017748	trub2	91	52.013	Hippocampus_comes
ENSRNOG00000043189	Trub2	91	51.864	ENSIPUG00000017725	hdhd3	51	51.864	Ictalurus_punctatus
ENSRNOG00000043189	Trub2	98	81.388	ENSSTOG00000008024	-	95	81.388	Ictidomys_tridecemlineatus
ENSRNOG00000043189	Trub2	98	81.905	ENSSTOG00000022617	-	96	81.905	Ictidomys_tridecemlineatus
ENSRNOG00000043189	Trub2	98	76.489	ENSJJAG00000019181	Trub2	95	76.489	Jaculus_jaculus
ENSRNOG00000043189	Trub2	85	52.347	ENSKMAG00000007861	trub2	83	52.347	Kryptolebias_marmoratus
ENSRNOG00000043189	Trub2	86	54.093	ENSLBEG00000000907	trub2	83	54.093	Labrus_bergylta
ENSRNOG00000043189	Trub2	91	61.017	ENSLACG00000001515	TRUB2	86	61.017	Latimeria_chalumnae
ENSRNOG00000043189	Trub2	86	57.092	ENSLOCG00000000885	trub2	92	57.092	Lepisosteus_oculatus
ENSRNOG00000043189	Trub2	92	83.557	ENSLAFG00000002174	TRUB2	98	83.557	Loxodonta_africana
ENSRNOG00000043189	Trub2	98	80.062	ENSMFAG00000000881	TRUB2	96	80.062	Macaca_fascicularis
ENSRNOG00000043189	Trub2	98	80.062	ENSMMUG00000014146	TRUB2	96	80.062	Macaca_mulatta
ENSRNOG00000043189	Trub2	98	79.751	ENSMNEG00000011189	TRUB2	96	79.751	Macaca_nemestrina
ENSRNOG00000043189	Trub2	98	80.062	ENSMLEG00000037270	TRUB2	96	80.062	Mandrillus_leucophaeus
ENSRNOG00000043189	Trub2	86	53.237	ENSMAMG00000023643	trub2	92	53.237	Mastacembelus_armatus
ENSRNOG00000043189	Trub2	86	53.763	ENSMZEG00005016018	trub2	84	53.763	Maylandia_zebra
ENSRNOG00000043189	Trub2	62	65.000	ENSMGAG00000003894	TRUB2	100	65.000	Meleagris_gallopavo
ENSRNOG00000043189	Trub2	98	90.252	ENSMAUG00000010403	Trub2	96	90.252	Mesocricetus_auratus
ENSRNOG00000043189	Trub2	98	80.757	ENSMICG00000047032	TRUB2	95	80.757	Microcebus_murinus
ENSRNOG00000043189	Trub2	94	90.164	ENSMOCG00000014291	Trub2	100	90.164	Microtus_ochrogaster
ENSRNOG00000043189	Trub2	86	53.597	ENSMMOG00000021674	trub2	86	53.597	Mola_mola
ENSRNOG00000043189	Trub2	90	72.260	ENSMODG00000005940	TRUB2	99	72.260	Monodelphis_domestica
ENSRNOG00000043189	Trub2	93	52.459	ENSMALG00000021231	trub2	89	52.459	Monopterus_albus
ENSRNOG00000043189	Trub2	98	91.772	MGP_CAROLIEiJ_G0023368	Trub2	95	91.772	Mus_caroli
ENSRNOG00000043189	Trub2	98	92.405	ENSMUSG00000039826	Trub2	95	92.405	Mus_musculus
ENSRNOG00000043189	Trub2	98	91.772	MGP_PahariEiJ_G0024826	Trub2	95	91.772	Mus_pahari
ENSRNOG00000043189	Trub2	98	93.038	MGP_SPRETEiJ_G0024286	Trub2	95	93.038	Mus_spretus
ENSRNOG00000043189	Trub2	98	78.616	ENSMPUG00000013206	TRUB2	87	78.616	Mustela_putorius_furo
ENSRNOG00000043189	Trub2	95	83.660	ENSMLUG00000005256	TRUB2	92	83.660	Myotis_lucifugus
ENSRNOG00000043189	Trub2	98	85.220	ENSNGAG00000018679	Trub2	96	85.220	Nannospalax_galili
ENSRNOG00000043189	Trub2	86	53.405	ENSNBRG00000016294	trub2	84	53.405	Neolamprologus_brichardi
ENSRNOG00000043189	Trub2	98	78.931	ENSNLEG00000017556	TRUB2	96	78.931	Nomascus_leucogenys
ENSRNOG00000043189	Trub2	92	75.676	ENSMEUG00000000484	TRUB2	95	75.676	Notamacropus_eugenii
ENSRNOG00000043189	Trub2	98	77.287	ENSOPRG00000001981	TRUB2	96	77.287	Ochotona_princeps
ENSRNOG00000043189	Trub2	100	79.876	ENSODEG00000017292	TRUB2	99	79.876	Octodon_degus
ENSRNOG00000043189	Trub2	86	53.047	ENSONIG00000004230	trub2	84	53.047	Oreochromis_niloticus
ENSRNOG00000043189	Trub2	58	75.401	ENSOANG00000029023	-	83	75.401	Ornithorhynchus_anatinus
ENSRNOG00000043189	Trub2	98	81.270	ENSOCUG00000026296	TRUB2	87	81.388	Oryctolagus_cuniculus
ENSRNOG00000043189	Trub2	86	51.786	ENSORLG00000020011	trub2	84	51.786	Oryzias_latipes
ENSRNOG00000043189	Trub2	86	51.971	ENSORLG00020011028	trub2	82	51.971	Oryzias_latipes_hni
ENSRNOG00000043189	Trub2	86	51.971	ENSORLG00015007494	trub2	86	51.971	Oryzias_latipes_hsok
ENSRNOG00000043189	Trub2	86	55.755	ENSOMEG00000006702	trub2	84	55.755	Oryzias_melastigma
ENSRNOG00000043189	Trub2	98	80.442	ENSOARG00000010579	-	95	80.442	Ovis_aries
ENSRNOG00000043189	Trub2	74	80.000	ENSOARG00000003785	-	94	80.000	Ovis_aries
ENSRNOG00000043189	Trub2	98	79.560	ENSPPAG00000043146	TRUB2	96	79.560	Pan_paniscus
ENSRNOG00000043189	Trub2	93	84.053	ENSPPRG00000006307	TRUB2	94	84.053	Panthera_pardus
ENSRNOG00000043189	Trub2	93	83.721	ENSPTIG00000012366	TRUB2	94	83.721	Panthera_tigris_altaica
ENSRNOG00000043189	Trub2	98	79.874	ENSPTRG00000021423	TRUB2	96	79.874	Pan_troglodytes
ENSRNOG00000043189	Trub2	98	79.874	ENSPTRG00000052151	-	96	79.874	Pan_troglodytes
ENSRNOG00000043189	Trub2	98	80.374	ENSPANG00000025856	TRUB2	96	80.374	Papio_anubis
ENSRNOG00000043189	Trub2	86	53.763	ENSPKIG00000019769	trub2	91	53.763	Paramormyrops_kingsleyae
ENSRNOG00000043189	Trub2	92	61.000	ENSPSIG00000015701	TRUB2	98	61.000	Pelodiscus_sinensis
ENSRNOG00000043189	Trub2	93	50.000	ENSPMGG00000010206	trub2	97	50.000	Periophthalmus_magnuspinnatus
ENSRNOG00000043189	Trub2	98	87.774	ENSPEMG00000017893	Trub2	96	88.268	Peromyscus_maniculatus_bairdii
ENSRNOG00000043189	Trub2	92	75.338	ENSPCIG00000026731	TRUB2	95	75.338	Phascolarctos_cinereus
ENSRNOG00000043189	Trub2	86	53.214	ENSPFOG00000018018	trub2	75	52.281	Poecilia_formosa
ENSRNOG00000043189	Trub2	86	53.214	ENSPLAG00000010484	trub2	85	51.495	Poecilia_latipinna
ENSRNOG00000043189	Trub2	90	51.370	ENSPMEG00000012913	trub2	86	51.370	Poecilia_mexicana
ENSRNOG00000043189	Trub2	86	52.688	ENSPREG00000002549	trub2	84	51.761	Poecilia_reticulata
ENSRNOG00000043189	Trub2	98	78.931	ENSPPYG00000019650	TRUB2	97	78.931	Pongo_abelii
ENSRNOG00000043189	Trub2	98	79.560	ENSPCAG00000015068	TRUB2	96	79.560	Procavia_capensis
ENSRNOG00000043189	Trub2	98	80.757	ENSPCOG00000017100	TRUB2	95	80.757	Propithecus_coquereli
ENSRNOG00000043189	Trub2	88	83.451	ENSPVAG00000001224	TRUB2	95	83.451	Pteropus_vampyrus
ENSRNOG00000043189	Trub2	86	53.763	ENSPNYG00000013666	trub2	84	53.763	Pundamilia_nyererei
ENSRNOG00000043189	Trub2	95	51.792	ENSPNAG00000017292	trub2	84	52.881	Pygocentrus_nattereri
ENSRNOG00000043189	Trub2	98	72.897	ENSRBIG00000006965	TRUB2	95	72.897	Rhinopithecus_bieti
ENSRNOG00000043189	Trub2	98	80.685	ENSRROG00000042928	TRUB2	96	80.685	Rhinopithecus_roxellana
ENSRNOG00000043189	Trub2	99	80.564	ENSSBOG00000022439	TRUB2	96	80.564	Saimiri_boliviensis_boliviensis
ENSRNOG00000043189	Trub2	86	55.755	ENSSFOG00015013391	trub2	89	55.755	Scleropages_formosus
ENSRNOG00000043189	Trub2	86	55.396	ENSSMAG00000020820	trub2	84	55.396	Scophthalmus_maximus
ENSRNOG00000043189	Trub2	86	53.405	ENSSDUG00000016928	trub2	83	53.405	Seriola_dumerili
ENSRNOG00000043189	Trub2	86	53.405	ENSSLDG00000024701	trub2	83	53.405	Seriola_lalandi_dorsalis
ENSRNOG00000043189	Trub2	97	56.918	ENSSPUG00000015515	TRUB2	95	56.918	Sphenodon_punctatus
ENSRNOG00000043189	Trub2	86	55.516	ENSSPAG00000017865	trub2	84	55.516	Stegastes_partitus
ENSRNOG00000043189	Trub2	99	81.424	ENSSSCG00000005645	TRUB2	96	81.185	Sus_scrofa
ENSRNOG00000043189	Trub2	81	63.740	ENSTGUG00000003704	TRUB2	100	63.740	Taeniopygia_guttata
ENSRNOG00000043189	Trub2	86	51.957	ENSTRUG00000015499	trub2	86	51.957	Takifugu_rubripes
ENSRNOG00000043189	Trub2	86	52.313	ENSTNIG00000014721	trub2	96	52.313	Tetraodon_nigroviridis
ENSRNOG00000043189	Trub2	65	77.251	ENSTBEG00000000586	TRUB2	93	77.251	Tupaia_belangeri
ENSRNOG00000043189	Trub2	98	76.656	ENSTTRG00000016486	TRUB2	95	76.656	Tursiops_truncatus
ENSRNOG00000043189	Trub2	98	80.442	ENSUAMG00000020276	TRUB2	93	80.442	Ursus_americanus
ENSRNOG00000043189	Trub2	98	80.442	ENSUMAG00000022051	TRUB2	93	80.442	Ursus_maritimus
ENSRNOG00000043189	Trub2	98	62.145	ENSVPAG00000005793	TRUB2	99	62.145	Vicugna_pacos
ENSRNOG00000043189	Trub2	94	82.566	ENSVVUG00000013451	TRUB2	86	82.566	Vulpes_vulpes
ENSRNOG00000043189	Trub2	85	63.406	ENSXETG00000003973	trub2	85	63.406	Xenopus_tropicalis
ENSRNOG00000043189	Trub2	86	52.688	ENSXCOG00000008759	trub2	83	52.688	Xiphophorus_couchianus
ENSRNOG00000043189	Trub2	86	52.688	ENSXMAG00000015478	trub2	83	52.688	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001522	pseudouridine synthesis	-	IEA	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005759	mitochondrial matrix	-	IEA	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008033	tRNA processing	-	IEA	Process
GO:0009982	pseudouridine synthase activity	-	IEA	Function
GO:0070131	positive regulation of mitochondrial translation	-	ISO	Process
GO:0070131	positive regulation of mitochondrial translation	-	ISS	Process