EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000043370 (Gene tree)
Gene ID: 654496
Gene Symbol: Fubp1
Alias: FBP
Full Name: far upstream element binding protein 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 23890 bases
Position: chr2:257425679-257449568
Accession: 1591892
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000061544	KH_1	PF00013.29	1.6e-69	1	4
ENSRNOP00000061544	KH_1	PF00013.29	1.6e-69	2	4
ENSRNOP00000061544	KH_1	PF00013.29	1.6e-69	3	4
ENSRNOP00000061544	KH_1	PF00013.29	1.6e-69	4	4
ENSRNOP00000061544	KH_2	PF07650.17	1.9e-22	1	2
ENSRNOP00000061544	KH_2	PF07650.17	1.9e-22	2	2
ENSRNOP00000061544	DUF1897	PF09005.10	8.3e-12	1	2
ENSRNOP00000061544	DUF1897	PF09005.10	8.3e-12	2	2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000066199	-	3323	XM_006233507	ENSRNOP00000061544	642 (aa)	XP_006233569	A0A140TAJ3

Gene Model

Click here to download ENSRNOG00000043370's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000043370's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000043370	Fubp1	56	31.319	ENSRNOG00000013847	Nova2	54	36.765
ENSRNOG00000043370	Fubp1	93	60.876	ENSRNOG00000047628	Khsrp	60	68.119
ENSRNOG00000043370	Fubp1	59	34.524	ENSRNOG00000012406	Pcbp4	74	34.524
ENSRNOG00000043370	Fubp1	94	54.959	ENSRNOG00000009139	Fubp3	82	65.340
ENSRNOG00000043370	Fubp1	52	40.625	ENSRNOG00000001245	Pcbp3	65	40.625
ENSRNOG00000043370	Fubp1	50	31.609	ENSRNOG00000031440	Nova1	55	36.364

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000043370	Fubp1	100	98.145	ENSG00000162613	FUBP1	100	98.145	Homo_sapiens
ENSRNOG00000043370	Fubp1	99	70.943	ENSAPOG00000014845	fubp1	70	76.652	Acanthochromis_polyacanthus
ENSRNOG00000043370	Fubp1	100	94.925	ENSAMEG00000007372	FUBP1	100	94.925	Ailuropoda_melanoleuca
ENSRNOG00000043370	Fubp1	100	69.646	ENSACIG00000020024	fubp1	69	74.444	Amphilophus_citrinellus
ENSRNOG00000043370	Fubp1	100	68.056	ENSAPEG00000012232	fubp1	72	77.704	Amphiprion_percula
ENSRNOG00000043370	Fubp1	100	70.923	ENSATEG00000018619	fubp1	70	78.842	Anabas_testudineus
ENSRNOG00000043370	Fubp1	94	97.025	ENSAPLG00000005965	FUBP1	100	97.025	Anas_platyrhynchos
ENSRNOG00000043370	Fubp1	99	86.696	ENSACAG00000006310	FUBP1	96	86.988	Anolis_carolinensis
ENSRNOG00000043370	Fubp1	99	71.538	ENSACLG00000006708	fubp1	72	78.396	Astatotilapia_calliptera
ENSRNOG00000043370	Fubp1	85	77.180	ENSAMXG00000005525	fubp1	64	86.337	Astyanax_mexicanus
ENSRNOG00000043370	Fubp1	100	98.452	ENSCJAG00000007062	FUBP1	100	98.452	Callithrix_jacchus
ENSRNOG00000043370	Fubp1	100	98.300	ENSCAFG00000020361	FUBP1	100	98.300	Canis_familiaris
ENSRNOG00000043370	Fubp1	94	98.517	ENSTSYG00000000148	FUBP1	100	98.517	Carlito_syrichta
ENSRNOG00000043370	Fubp1	58	97.802	ENSCAPG00000011052	-	67	97.802	Cavia_aperea
ENSRNOG00000043370	Fubp1	99	98.452	ENSCPOG00000002757	FUBP1	100	97.987	Cavia_porcellus
ENSRNOG00000043370	Fubp1	100	82.659	ENSCCAG00000036537	FUBP1	100	82.948	Cebus_capucinus
ENSRNOG00000043370	Fubp1	100	98.145	ENSCATG00000042126	FUBP1	100	98.145	Cercocebus_atys
ENSRNOG00000043370	Fubp1	100	97.991	ENSCLAG00000005621	FUBP1	100	100.000	Chinchilla_lanigera
ENSRNOG00000043370	Fubp1	100	98.145	ENSCSAG00000001402	FUBP1	100	98.145	Chlorocebus_sabaeus
ENSRNOG00000043370	Fubp1	99	97.988	ENSCHOG00000008177	FUBP1	98	97.988	Choloepus_hoffmanni
ENSRNOG00000043370	Fubp1	100	99.067	ENSCGRG00001007103	Fubp1	100	99.067	Cricetulus_griseus_chok1gshd
ENSRNOG00000043370	Fubp1	94	99.176	ENSCGRG00000003372	Fubp1	100	99.176	Cricetulus_griseus_crigri
ENSRNOG00000043370	Fubp1	100	70.814	ENSCSEG00000021412	fubp1	69	77.951	Cynoglossus_semilaevis
ENSRNOG00000043370	Fubp1	99	69.851	ENSCVAG00000014487	fubp1	60	84.986	Cyprinodon_variegatus
ENSRNOG00000043370	Fubp1	100	70.348	ENSDARG00000029248	fubp1	70	78.043	Danio_rerio
ENSRNOG00000043370	Fubp1	84	69.136	ENSDNOG00000034565	-	83	70.930	Dasypus_novemcinctus
ENSRNOG00000043370	Fubp1	99	97.833	ENSDORG00000016534	Fubp1	98	97.833	Dipodomys_ordii
ENSRNOG00000043370	Fubp1	76	99.123	ENSETEG00000000948	-	58	99.123	Echinops_telfairi
ENSRNOG00000043370	Fubp1	83	47.568	ENSEBUG00000016143	fubp1	64	58.462	Eptatretus_burgeri
ENSRNOG00000043370	Fubp1	60	100.000	ENSEEUG00000001287	FUBP1	89	94.057	Erinaceus_europaeus
ENSRNOG00000043370	Fubp1	100	68.437	ENSELUG00000007990	fubp1	70	75.328	Esox_lucius
ENSRNOG00000043370	Fubp1	70	97.339	ENSFALG00000005768	FUBP1	97	94.557	Ficedula_albicollis
ENSRNOG00000043370	Fubp1	99	97.988	ENSFDAG00000014210	FUBP1	100	100.000	Fukomys_damarensis
ENSRNOG00000043370	Fubp1	100	71.889	ENSFHEG00000005230	fubp1	70	79.510	Fundulus_heteroclitus
ENSRNOG00000043370	Fubp1	100	66.308	ENSGMOG00000003370	fubp1	70	69.912	Gadus_morhua
ENSRNOG00000043370	Fubp1	100	96.285	ENSGALG00000008939	FUBP1	100	96.285	Gallus_gallus
ENSRNOG00000043370	Fubp1	100	70.393	ENSGAFG00000020972	fubp1	91	77.982	Gambusia_affinis
ENSRNOG00000043370	Fubp1	100	70.444	ENSGACG00000016563	fubp1	70	76.264	Gasterosteus_aculeatus
ENSRNOG00000043370	Fubp1	100	70.134	ENSHBUG00000009835	fubp1	85	77.506	Haplochromis_burtoni
ENSRNOG00000043370	Fubp1	100	98.609	ENSHGLG00000008415	-	100	100.000	Heterocephalus_glaber_female
ENSRNOG00000043370	Fubp1	71	91.921	ENSHGLG00000002808	-	71	91.537	Heterocephalus_glaber_female
ENSRNOG00000043370	Fubp1	71	92.795	ENSHGLG00100001414	-	71	92.205	Heterocephalus_glaber_male
ENSRNOG00000043370	Fubp1	100	98.609	ENSHGLG00100003417	-	100	98.609	Heterocephalus_glaber_male
ENSRNOG00000043370	Fubp1	100	68.722	ENSHCOG00000000910	fubp1	70	75.758	Hippocampus_comes
ENSRNOG00000043370	Fubp1	100	74.085	ENSIPUG00000009896	fubp1	70	78.540	Ictalurus_punctatus
ENSRNOG00000043370	Fubp1	100	98.300	ENSSTOG00000014312	FUBP1	100	98.300	Ictidomys_tridecemlineatus
ENSRNOG00000043370	Fubp1	100	98.297	ENSJJAG00000020069	Fubp1	100	100.000	Jaculus_jaculus
ENSRNOG00000043370	Fubp1	100	70.923	ENSKMAG00000018897	fubp1	69	77.506	Kryptolebias_marmoratus
ENSRNOG00000043370	Fubp1	100	67.417	ENSLBEG00000012700	fubp1	72	75.589	Labrus_bergylta
ENSRNOG00000043370	Fubp1	98	71.556	ENSLOCG00000003745	fubp1	92	74.793	Lepisosteus_oculatus
ENSRNOG00000043370	Fubp1	99	95.338	ENSLAFG00000003273	FUBP1	100	98.018	Loxodonta_africana
ENSRNOG00000043370	Fubp1	100	98.297	ENSMFAG00000031825	FUBP1	100	98.297	Macaca_fascicularis
ENSRNOG00000043370	Fubp1	100	98.145	ENSMMUG00000002899	FUBP1	100	98.145	Macaca_mulatta
ENSRNOG00000043370	Fubp1	100	98.145	ENSMNEG00000045212	FUBP1	100	98.145	Macaca_nemestrina
ENSRNOG00000043370	Fubp1	100	71.626	ENSMZEG00005024298	fubp1	70	79.029	Maylandia_zebra
ENSRNOG00000043370	Fubp1	94	96.546	ENSMGAG00000009424	FUBP1	100	96.546	Meleagris_gallopavo
ENSRNOG00000043370	Fubp1	99	98.297	ENSMAUG00000016428	Fubp1	98	99.315	Mesocricetus_auratus
ENSRNOG00000043370	Fubp1	99	99.533	ENSMOCG00000014751	Fubp1	100	98.658	Microtus_ochrogaster
ENSRNOG00000043370	Fubp1	85	73.466	ENSMMOG00000019463	fubp1	64	82.817	Mola_mola
ENSRNOG00000043370	Fubp1	96	90.282	ENSMODG00000020804	FUBP1	100	90.282	Monodelphis_domestica
ENSRNOG00000043370	Fubp1	100	71.186	ENSMALG00000015173	fubp1	70	77.951	Monopterus_albus
ENSRNOG00000043370	Fubp1	100	99.533	MGP_CAROLIEiJ_G0025740	Fubp1	100	99.533	Mus_caroli
ENSRNOG00000043370	Fubp1	100	99.221	ENSMUSG00000028034	Fubp1	100	99.221	Mus_musculus
ENSRNOG00000043370	Fubp1	100	99.533	MGP_PahariEiJ_G0027191	Fubp1	100	99.533	Mus_pahari
ENSRNOG00000043370	Fubp1	100	99.377	MGP_SPRETEiJ_G0026693	Fubp1	100	99.377	Mus_spretus
ENSRNOG00000043370	Fubp1	100	94.039	ENSMLUG00000014802	FUBP1	100	94.039	Myotis_lucifugus
ENSRNOG00000043370	Fubp1	100	95.334	ENSNGAG00000014302	Fubp1	98	100.000	Nannospalax_galili
ENSRNOG00000043370	Fubp1	100	68.323	ENSNBRG00000015099	fubp1	72	78.396	Neolamprologus_brichardi
ENSRNOG00000043370	Fubp1	100	94.299	ENSNLEG00000009772	FUBP1	100	94.299	Nomascus_leucogenys
ENSRNOG00000043370	Fubp1	91	97.674	ENSMEUG00000007917	-	77	97.674	Notamacropus_eugenii
ENSRNOG00000043370	Fubp1	90	96.350	ENSOPRG00000001175	FUBP1	89	96.350	Ochotona_princeps
ENSRNOG00000043370	Fubp1	99	98.142	ENSODEG00000002600	-	100	100.000	Octodon_degus
ENSRNOG00000043370	Fubp1	99	67.188	ENSODEG00000003657	-	99	66.406	Octodon_degus
ENSRNOG00000043370	Fubp1	99	70.343	ENSONIG00000018381	fubp1	69	79.029	Oreochromis_niloticus
ENSRNOG00000043370	Fubp1	90	92.282	ENSOANG00000009777	FUBP1	99	92.118	Ornithorhynchus_anatinus
ENSRNOG00000043370	Fubp1	99	68.487	ENSORLG00000003540	fubp1	71	78.396	Oryzias_latipes
ENSRNOG00000043370	Fubp1	99	70.089	ENSORLG00020005908	fubp1	70	77.728	Oryzias_latipes_hni
ENSRNOG00000043370	Fubp1	99	71.139	ENSORLG00015008779	fubp1	69	78.842	Oryzias_latipes_hsok
ENSRNOG00000043370	Fubp1	100	70.295	ENSOMEG00000021943	fubp1	70	76.169	Oryzias_melastigma
ENSRNOG00000043370	Fubp1	100	94.643	ENSOGAG00000014233	FUBP1	100	94.643	Otolemur_garnettii
ENSRNOG00000043370	Fubp1	100	95.345	ENSOARG00000013259	FUBP1	100	95.195	Ovis_aries
ENSRNOG00000043370	Fubp1	100	98.300	ENSPPRG00000000413	FUBP1	100	98.300	Panthera_pardus
ENSRNOG00000043370	Fubp1	100	98.300	ENSPTIG00000019450	FUBP1	100	98.300	Panthera_tigris_altaica
ENSRNOG00000043370	Fubp1	95	95.603	ENSPSIG00000012965	FUBP1	100	96.303	Pelodiscus_sinensis
ENSRNOG00000043370	Fubp1	99	71.827	ENSPMGG00000009060	fubp1	71	77.143	Periophthalmus_magnuspinnatus
ENSRNOG00000043370	Fubp1	99	98.754	ENSPEMG00000021802	Fubp1	100	99.315	Peromyscus_maniculatus_bairdii
ENSRNOG00000043370	Fubp1	59	59.514	ENSPMAG00000001644	-	90	63.063	Petromyzon_marinus
ENSRNOG00000043370	Fubp1	100	68.992	ENSPLAG00000021170	fubp1	72	79.510	Poecilia_latipinna
ENSRNOG00000043370	Fubp1	99	72.939	ENSPMEG00000004747	fubp1	73	79.510	Poecilia_mexicana
ENSRNOG00000043370	Fubp1	99	71.957	ENSPREG00000017911	fubp1	70	79.510	Poecilia_reticulata
ENSRNOG00000043370	Fubp1	71	98.482	ENSPPYG00000001219	-	70	98.482	Pongo_abelii
ENSRNOG00000043370	Fubp1	99	98.140	ENSPCAG00000012617	FUBP1	98	98.140	Procavia_capensis
ENSRNOG00000043370	Fubp1	100	98.300	ENSPCOG00000024974	FUBP1	100	98.300	Propithecus_coquereli
ENSRNOG00000043370	Fubp1	99	93.808	ENSPVAG00000014637	FUBP1	98	93.808	Pteropus_vampyrus
ENSRNOG00000043370	Fubp1	100	71.626	ENSPNYG00000004552	fubp1	73	78.842	Pundamilia_nyererei
ENSRNOG00000043370	Fubp1	100	72.660	ENSPNAG00000016207	fubp1	87	76.623	Pygocentrus_nattereri
ENSRNOG00000043370	Fubp1	100	98.145	ENSRBIG00000042950	FUBP1	100	98.145	Rhinopithecus_bieti
ENSRNOG00000043370	Fubp1	100	98.145	ENSRROG00000043534	FUBP1	100	98.145	Rhinopithecus_roxellana
ENSRNOG00000043370	Fubp1	100	98.300	ENSSBOG00000027299	FUBP1	100	98.300	Saimiri_boliviensis_boliviensis
ENSRNOG00000043370	Fubp1	94	96.885	ENSSHAG00000005367	FUBP1	100	98.018	Sarcophilus_harrisii
ENSRNOG00000043370	Fubp1	100	72.795	ENSSFOG00015010213	fubp1	70	79.823	Scleropages_formosus
ENSRNOG00000043370	Fubp1	100	69.501	ENSSDUG00000007383	fubp1	68	77.391	Seriola_dumerili
ENSRNOG00000043370	Fubp1	100	70.499	ENSSLDG00000022863	fubp1	72	77.162	Seriola_lalandi_dorsalis
ENSRNOG00000043370	Fubp1	99	94.982	ENSSARG00000011730	FUBP1	57	100.000	Sorex_araneus
ENSRNOG00000043370	Fubp1	99	88.671	ENSSPUG00000008389	FUBP1	100	85.693	Sphenodon_punctatus
ENSRNOG00000043370	Fubp1	99	72.360	ENSSPAG00000010161	fubp1	69	78.174	Stegastes_partitus
ENSRNOG00000043370	Fubp1	94	95.908	ENSTGUG00000006841	FUBP1	100	95.908	Taeniopygia_guttata
ENSRNOG00000043370	Fubp1	94	72.213	ENSTRUG00000004615	fubp1	65	78.842	Takifugu_rubripes
ENSRNOG00000043370	Fubp1	50	84.459	ENSTNIG00000019815	-	88	84.459	Tetraodon_nigroviridis
ENSRNOG00000043370	Fubp1	82	100.000	ENSTBEG00000017333	FUBP1	65	100.000	Tupaia_belangeri
ENSRNOG00000043370	Fubp1	99	98.142	ENSTTRG00000000096	FUBP1	98	98.142	Tursiops_truncatus
ENSRNOG00000043370	Fubp1	99	98.142	ENSVPAG00000004709	FUBP1	99	98.142	Vicugna_pacos
ENSRNOG00000043370	Fubp1	100	69.147	ENSXCOG00000019354	fubp1	72	77.951	Xiphophorus_couchianus
ENSRNOG00000043370	Fubp1	97	72.204	ENSXMAG00000007168	fubp1	73	79.287	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	-	ISO	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	23939805.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0006357	regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0010628	positive regulation of gene expression	-	IEA	Process
GO:0010628	positive regulation of gene expression	-	ISO	Process
GO:0045202	synapse	-	ISO	Component
GO:0048103	somatic stem cell division	-	ISO	Process
GO:0048588	developmental cell growth	-	ISO	Process
GO:0071222	cellular response to lipopolysaccharide	23797733.	IEP	Process
GO:0071425	hematopoietic stem cell proliferation	-	ISO	Process
GO:1900149	positive regulation of Schwann cell migration	23939805.	IMP	Process
GO:1990837	sequence-specific double-stranded DNA binding	-	ISO	Function