EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000047594 (Gene tree)
Gene ID: 108348069
Gene Symbol: LOC108348069
Alias: -
Full Name: HEAT repeat-containing protein 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 173089 bases
Position: chr17:66446162-66619250
Accession: 11474378
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000064012	U3snoRNP10	PF12397.8	2e-29	1	1
ENSRNOP00000065894	U3snoRNP10	PF12397.8	2e-29	1	1
ENSRNOP00000069390	U3snoRNP10	PF12397.8	1.1e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000078906	-	5888	-	ENSRNOP00000069390	1790 (aa)	-	A0A0G2JV87
ENSRNOT00000070825	-	6432	XM_006254170	ENSRNOP00000064012	2143 (aa)	XP_017456118	D3ZL86
ENSRNOT00000071829	-	6432	XM_006254175	ENSRNOP00000065894	2143 (aa)	XP_006254237	D3ZL86

Gene Model

Click here to download ENSRNOG00000047594's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03008	Ribosome biogenesis in eukaryotes	KEGG
rno03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000047594's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000047594	LOC108348069	96	89.286	ENSG00000119285	HEATR1	100	95.833	Homo_sapiens
ENSRNOG00000047594	LOC108348069	100	49.153	ENSAPOG00000008169	heatr1	100	49.333	Acanthochromis_polyacanthus
ENSRNOG00000047594	LOC108348069	100	83.014	ENSAMEG00000001015	HEATR1	100	83.014	Ailuropoda_melanoleuca
ENSRNOG00000047594	LOC108348069	100	51.917	ENSACIG00000015343	heatr1	100	52.009	Amphilophus_citrinellus
ENSRNOG00000047594	LOC108348069	93	52.294	ENSAPEG00000009996	heatr1	95	52.440	Amphiprion_percula
ENSRNOG00000047594	LOC108348069	100	51.271	ENSATEG00000013260	heatr1	100	51.156	Anabas_testudineus
ENSRNOG00000047594	LOC108348069	99	63.989	ENSAPLG00000008015	HEATR1	100	64.129	Anas_platyrhynchos
ENSRNOG00000047594	LOC108348069	51	50.756	ENSACAG00000002477	-	99	50.756	Anolis_carolinensis
ENSRNOG00000047594	LOC108348069	96	88.696	ENSANAG00000021975	HEATR1	100	88.696	Aotus_nancymaae
ENSRNOG00000047594	LOC108348069	100	51.653	ENSAMXG00000040261	heatr1	100	51.608	Astyanax_mexicanus
ENSRNOG00000047594	LOC108348069	100	83.061	ENSBTAG00000044100	HEATR1	100	83.061	Bos_taurus
ENSRNOG00000047594	LOC108348069	96	88.599	ENSCJAG00000017734	HEATR1	100	88.599	Callithrix_jacchus
ENSRNOG00000047594	LOC108348069	100	83.341	ENSCAFG00000010919	HEATR1	100	83.341	Canis_familiaris
ENSRNOG00000047594	LOC108348069	96	87.923	ENSCAFG00020026884	HEATR1	100	87.923	Canis_lupus_dingo
ENSRNOG00000047594	LOC108348069	100	82.128	ENSCHIG00000022619	HEATR1	100	83.671	Capra_hircus
ENSRNOG00000047594	LOC108348069	100	83.854	ENSTSYG00000000988	HEATR1	100	87.150	Carlito_syrichta
ENSRNOG00000047594	LOC108348069	97	66.264	ENSCAPG00000011461	HEATR1	100	68.108	Cavia_aperea
ENSRNOG00000047594	LOC108348069	100	84.134	ENSCPOG00000008331	HEATR1	100	84.134	Cavia_porcellus
ENSRNOG00000047594	LOC108348069	96	88.309	ENSCCAG00000037071	HEATR1	100	88.309	Cebus_capucinus
ENSRNOG00000047594	LOC108348069	96	88.803	ENSCATG00000021120	HEATR1	100	88.803	Cercocebus_atys
ENSRNOG00000047594	LOC108348069	100	84.515	ENSCLAG00000016900	HEATR1	100	84.515	Chinchilla_lanigera
ENSRNOG00000047594	LOC108348069	100	84.748	ENSCSAG00000009731	HEATR1	100	84.748	Chlorocebus_sabaeus
ENSRNOG00000047594	LOC108348069	90	93.617	ENSCHOG00000004046	HEATR1	90	93.617	Choloepus_hoffmanni
ENSRNOG00000047594	LOC108348069	99	65.555	ENSCPBG00000004198	HEATR1	99	65.367	Chrysemys_picta_bellii
ENSRNOG00000047594	LOC108348069	87	35.727	ENSCSAVG00000000516	-	88	35.501	Ciona_savignyi
ENSRNOG00000047594	LOC108348069	96	88.610	ENSCANG00000027702	HEATR1	100	88.610	Colobus_angolensis_palliatus
ENSRNOG00000047594	LOC108348069	100	92.161	ENSCGRG00001020538	Heatr1	100	92.161	Cricetulus_griseus_chok1gshd
ENSRNOG00000047594	LOC108348069	100	92.161	ENSCGRG00000016828	Heatr1	100	92.161	Cricetulus_griseus_crigri
ENSRNOG00000047594	LOC108348069	100	52.928	ENSDARG00000099742	heatr1	100	52.973	Danio_rerio
ENSRNOG00000047594	LOC108348069	100	83.644	ENSDNOG00000009046	HEATR1	100	83.644	Dasypus_novemcinctus
ENSRNOG00000047594	LOC108348069	88	86.017	ENSDORG00000004607	Heatr1	99	86.017	Dipodomys_ordii
ENSRNOG00000047594	LOC108348069	85	31.413	FBgn0086451	l(2)k09022	92	31.413	Drosophila_melanogaster
ENSRNOG00000047594	LOC108348069	92	82.998	ENSETEG00000004144	HEATR1	93	79.029	Echinops_telfairi
ENSRNOG00000047594	LOC108348069	100	84.974	ENSECAG00000021443	HEATR1	100	84.974	Equus_caballus
ENSRNOG00000047594	LOC108348069	89	90.698	ENSEEUG00000008946	HEATR1	82	90.698	Erinaceus_europaeus
ENSRNOG00000047594	LOC108348069	100	53.275	ENSELUG00000005309	heatr1	100	53.364	Esox_lucius
ENSRNOG00000047594	LOC108348069	97	63.148	ENSFALG00000013475	HEATR1	100	63.148	Ficedula_albicollis
ENSRNOG00000047594	LOC108348069	100	84.282	ENSFDAG00000012144	HEATR1	100	84.282	Fukomys_damarensis
ENSRNOG00000047594	LOC108348069	100	50.023	ENSGMOG00000014830	heatr1	100	49.954	Gadus_morhua
ENSRNOG00000047594	LOC108348069	100	48.893	ENSGAFG00000014904	heatr1	100	48.939	Gambusia_affinis
ENSRNOG00000047594	LOC108348069	100	48.799	ENSGACG00000010205	heatr1	100	48.845	Gasterosteus_aculeatus
ENSRNOG00000047594	LOC108348069	100	65.554	ENSGAGG00000018712	HEATR1	100	65.369	Gopherus_agassizii
ENSRNOG00000047594	LOC108348069	96	89.093	ENSGGOG00000006913	HEATR1	100	89.093	Gorilla_gorilla
ENSRNOG00000047594	LOC108348069	100	84.554	ENSHGLG00000016543	HEATR1	100	84.554	Heterocephalus_glaber_female
ENSRNOG00000047594	LOC108348069	100	84.368	ENSHGLG00100015785	HEATR1	100	84.368	Heterocephalus_glaber_male
ENSRNOG00000047594	LOC108348069	100	52.922	ENSIPUG00000012219	heatr1	100	52.711	Ictalurus_punctatus
ENSRNOG00000047594	LOC108348069	100	84.601	ENSSTOG00000007293	HEATR1	100	84.601	Ictidomys_tridecemlineatus
ENSRNOG00000047594	LOC108348069	66	78.814	ENSLAFG00000002968	-	100	78.814	Loxodonta_africana
ENSRNOG00000047594	LOC108348069	100	84.328	ENSMFAG00000044672	HEATR1	100	84.328	Macaca_fascicularis
ENSRNOG00000047594	LOC108348069	100	84.375	ENSMMUG00000015135	HEATR1	100	84.375	Macaca_mulatta
ENSRNOG00000047594	LOC108348069	100	84.328	ENSMNEG00000035612	HEATR1	100	88.610	Macaca_nemestrina
ENSRNOG00000047594	LOC108348069	96	88.996	ENSMLEG00000035012	HEATR1	100	88.996	Mandrillus_leucophaeus
ENSRNOG00000047594	LOC108348069	100	51.421	ENSMAMG00000010181	heatr1	100	51.650	Mastacembelus_armatus
ENSRNOG00000047594	LOC108348069	100	61.229	ENSMGAG00000011761	HEATR1	100	61.275	Meleagris_gallopavo
ENSRNOG00000047594	LOC108348069	96	89.469	ENSMICG00000015859	HEATR1	100	89.469	Microcebus_murinus
ENSRNOG00000047594	LOC108348069	100	74.219	ENSMODG00000007936	HEATR1	100	74.079	Monodelphis_domestica
ENSRNOG00000047594	LOC108348069	99	48.535	ENSMALG00000011014	heatr1	99	47.007	Monopterus_albus
ENSRNOG00000047594	LOC108348069	100	92.954	ENSMUSG00000050244	Heatr1	100	92.954	Mus_musculus
ENSRNOG00000047594	LOC108348069	100	93.700	MGP_PahariEiJ_G0019273	Heatr1	100	93.700	Mus_pahari
ENSRNOG00000047594	LOC108348069	100	93.047	MGP_SPRETEiJ_G0019081	Heatr1	100	93.047	Mus_spretus
ENSRNOG00000047594	LOC108348069	100	83.854	ENSMPUG00000012748	HEATR1	100	83.854	Mustela_putorius_furo
ENSRNOG00000047594	LOC108348069	92	81.689	ENSMLUG00000023156	-	100	81.689	Myotis_lucifugus
ENSRNOG00000047594	LOC108348069	100	81.521	ENSMLUG00000024338	-	100	81.521	Myotis_lucifugus
ENSRNOG00000047594	LOC108348069	100	85.861	ENSNGAG00000017650	Heatr1	100	85.861	Nannospalax_galili
ENSRNOG00000047594	LOC108348069	96	89.275	ENSNLEG00000003345	HEATR1	100	89.275	Nomascus_leucogenys
ENSRNOG00000047594	LOC108348069	98	77.661	ENSOPRG00000010081	HEATR1	100	77.613	Ochotona_princeps
ENSRNOG00000047594	LOC108348069	100	51.426	ENSONIG00000019095	heatr1	100	51.610	Oreochromis_niloticus
ENSRNOG00000047594	LOC108348069	66	60.401	ENSOANG00000006937	-	100	60.401	Ornithorhynchus_anatinus
ENSRNOG00000047594	LOC108348069	100	84.088	ENSOCUG00000014007	HEATR1	100	84.088	Oryctolagus_cuniculus
ENSRNOG00000047594	LOC108348069	100	54.307	ENSORLG00015018281	heatr1	94	54.775	Oryzias_latipes_hsok
ENSRNOG00000047594	LOC108348069	66	80.000	ENSOGAG00000010984	-	100	80.000	Otolemur_garnettii
ENSRNOG00000047594	LOC108348069	100	82.268	ENSOARG00000003675	HEATR1	100	82.268	Ovis_aries
ENSRNOG00000047594	LOC108348069	96	89.286	ENSPPAG00000036487	HEATR1	100	89.286	Pan_paniscus
ENSRNOG00000047594	LOC108348069	96	87.729	ENSPPRG00000014254	HEATR1	100	87.729	Panthera_pardus
ENSRNOG00000047594	LOC108348069	96	87.826	ENSPTIG00000017413	HEATR1	100	87.826	Panthera_tigris_altaica
ENSRNOG00000047594	LOC108348069	96	89.479	ENSPTRG00000002141	HEATR1	100	89.479	Pan_troglodytes
ENSRNOG00000047594	LOC108348069	96	88.803	ENSPANG00000020212	HEATR1	100	88.803	Papio_anubis
ENSRNOG00000047594	LOC108348069	91	52.685	ENSPKIG00000002326	heatr1	100	52.736	Paramormyrops_kingsleyae
ENSRNOG00000047594	LOC108348069	100	64.233	ENSPSIG00000010048	HEATR1	100	64.140	Pelodiscus_sinensis
ENSRNOG00000047594	LOC108348069	100	74.231	ENSPCIG00000008351	HEATR1	100	74.091	Phascolarctos_cinereus
ENSRNOG00000047594	LOC108348069	100	50.412	ENSPFOG00000006008	heatr1	100	50.368	Poecilia_formosa
ENSRNOG00000047594	LOC108348069	100	84.655	ENSPPYG00000000085	HEATR1	100	84.655	Pongo_abelii
ENSRNOG00000047594	LOC108348069	92	86.409	ENSPCOG00000018534	HEATR1	97	87.729	Propithecus_coquereli
ENSRNOG00000047594	LOC108348069	100	80.261	ENSPVAG00000013860	HEATR1	100	80.261	Pteropus_vampyrus
ENSRNOG00000047594	LOC108348069	100	53.659	ENSPNAG00000025592	heatr1	100	53.797	Pygocentrus_nattereri
ENSRNOG00000047594	LOC108348069	96	88.514	ENSRBIG00000039995	HEATR1	100	88.514	Rhinopithecus_bieti
ENSRNOG00000047594	LOC108348069	96	89.093	ENSRROG00000037217	HEATR1	100	89.093	Rhinopithecus_roxellana
ENSRNOG00000047594	LOC108348069	100	84.274	ENSSBOG00000033349	HEATR1	100	88.213	Saimiri_boliviensis_boliviensis
ENSRNOG00000047594	LOC108348069	100	74.079	ENSSHAG00000007902	HEATR1	100	73.986	Sarcophilus_harrisii
ENSRNOG00000047594	LOC108348069	100	54.163	ENSSFOG00015009818	heatr1	100	54.163	Scleropages_formosus
ENSRNOG00000047594	LOC108348069	85	59.176	ENSSMAG00000013148	heatr1	98	49.375	Scophthalmus_maximus
ENSRNOG00000047594	LOC108348069	100	50.298	ENSSDUG00000013751	heatr1	100	50.528	Seriola_dumerili
ENSRNOG00000047594	LOC108348069	85	50.420	ENSSLDG00000017083	heatr1	92	55.556	Seriola_lalandi_dorsalis
ENSRNOG00000047594	LOC108348069	86	89.362	ENSSARG00000012336	HEATR1	86	89.362	Sorex_araneus
ENSRNOG00000047594	LOC108348069	99	81.120	ENSSSCG00000010145	HEATR1	99	81.111	Sus_scrofa
ENSRNOG00000047594	LOC108348069	100	63.708	ENSTGUG00000010404	HEATR1	100	63.708	Taeniopygia_guttata
ENSRNOG00000047594	LOC108348069	96	57.780	ENSTNIG00000003577	heatr1	100	57.780	Tetraodon_nigroviridis
ENSRNOG00000047594	LOC108348069	81	77.885	ENSTBEG00000017495	HEATR1	82	77.885	Tupaia_belangeri
ENSRNOG00000047594	LOC108348069	97	83.108	ENSTTRG00000012382	HEATR1	96	83.108	Tursiops_truncatus
ENSRNOG00000047594	LOC108348069	57	86.367	ENSUAMG00000010978	-	98	87.536	Ursus_americanus
ENSRNOG00000047594	LOC108348069	100	83.434	ENSVVUG00000009369	HEATR1	100	83.434	Vulpes_vulpes
ENSRNOG00000047594	LOC108348069	100	58.731	ENSXETG00000009013	heatr1	100	58.731	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0001650	fibrillar center	-	IEA	Component
GO:0001650	fibrillar center	-	ISO	Component
GO:0003674	molecular_function	-	ND	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005739	mitochondrion	-	IEA	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0008150	biological_process	-	ND	Process
GO:0030686	90S preribosome	21873635.	IBA	Component
GO:0032040	small-subunit processome	21873635.	IBA	Component
GO:0034455	t-UTP complex	21873635.	IBA	Component
GO:0045943	positive regulation of transcription by RNA polymerase I	21873635.	IBA	Process
GO:0045943	positive regulation of transcription by RNA polymerase I	-	ISO	Process
GO:2000234	positive regulation of rRNA processing	-	IEA	Process
GO:2000234	positive regulation of rRNA processing	-	ISO	Process
GO:0001650	fibrillar center	-	IEA	Component
GO:0005739	mitochondrion	-	IEA	Component
GO:2000234	positive regulation of rRNA processing	-	IEA	Process