EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000048025 (Gene tree)
Gene ID: 683927
Gene Symbol: Cstf2
Alias: LOC683927|MGC188397
Full Name: cleavage stimulation factor subunit 2
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 27036 bases
Position: chrX:104882704-104909739
Accession: 1596566
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000069956	RRM_1	PF00076.22	1.4e-25	1	1
ENSRNOP00000066513	RRM_1	PF00076.22	1.6e-25	1	1
ENSRNOP00000073796	RRM_1	PF00076.22	9.4e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000082983	-	1725	-	ENSRNOP00000073796	575 (aa)	-	A0A0G2K6F9
ENSRNOT00000079572	-	1900	-	ENSRNOP00000069956	525 (aa)	-	A0A0G2JWP1
ENSRNOT00000074330	-	4317	XM_008773440	ENSRNOP00000066513	575 (aa)	XP_008771662	B4F7F1

Gene Model

Click here to download ENSRNOG00000048025's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000048025's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000048025	Cstf2	99	65.993	ENSRNOG00000050289	Cstf2t	99	64.961

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000048025	Cstf2	100	92.759	ENSG00000101811	CSTF2	96	98.140	Homo_sapiens
ENSRNOG00000048025	Cstf2	99	59.966	ENSAPOG00000005630	cstf2	96	60.069	Acanthochromis_polyacanthus
ENSRNOG00000048025	Cstf2	99	90.584	ENSAMEG00000002082	CSTF2	100	87.809	Ailuropoda_melanoleuca
ENSRNOG00000048025	Cstf2	87	83.884	ENSACIG00000012852	cstf2	96	57.539	Amphilophus_citrinellus
ENSRNOG00000048025	Cstf2	99	58.031	ENSAOCG00000020905	cstf2	96	60.241	Amphiprion_ocellaris
ENSRNOG00000048025	Cstf2	99	58.031	ENSAPEG00000006526	cstf2	96	60.241	Amphiprion_percula
ENSRNOG00000048025	Cstf2	87	81.070	ENSATEG00000018186	cstf2	96	60.312	Anabas_testudineus
ENSRNOG00000048025	Cstf2	97	74.957	ENSAPLG00000007255	CSTF2	98	73.862	Anas_platyrhynchos
ENSRNOG00000048025	Cstf2	100	91.552	ENSANAG00000022342	CSTF2	100	91.552	Aotus_nancymaae
ENSRNOG00000048025	Cstf2	87	83.884	ENSACLG00000000779	cstf2	93	60.862	Astatotilapia_calliptera
ENSRNOG00000048025	Cstf2	94	81.176	ENSAMXG00000021477	cstf2	96	98.413	Astyanax_mexicanus
ENSRNOG00000048025	Cstf2	100	91.130	ENSBTAG00000003547	CSTF2	100	91.130	Bos_taurus
ENSRNOG00000048025	Cstf2	100	91.897	ENSCJAG00000004422	CSTF2	100	91.897	Callithrix_jacchus
ENSRNOG00000048025	Cstf2	100	91.207	ENSCAFG00000017551	CSTF2	100	91.207	Canis_familiaris
ENSRNOG00000048025	Cstf2	99	90.840	ENSCAFG00020007619	CSTF2	98	90.476	Canis_lupus_dingo
ENSRNOG00000048025	Cstf2	100	91.130	ENSCHIG00000016994	CSTF2	100	91.130	Capra_hircus
ENSRNOG00000048025	Cstf2	100	92.759	ENSTSYG00000006529	CSTF2	100	92.759	Carlito_syrichta
ENSRNOG00000048025	Cstf2	100	91.207	ENSCPOG00000015255	CSTF2	100	91.207	Cavia_porcellus
ENSRNOG00000048025	Cstf2	100	91.897	ENSCCAG00000032975	CSTF2	100	91.897	Cebus_capucinus
ENSRNOG00000048025	Cstf2	100	92.348	ENSCATG00000022835	CSTF2	100	92.348	Cercocebus_atys
ENSRNOG00000048025	Cstf2	100	91.207	ENSCLAG00000001904	CSTF2	100	91.207	Chinchilla_lanigera
ENSRNOG00000048025	Cstf2	99	92.176	ENSCSAG00000010360	CSTF2	100	89.333	Chlorocebus_sabaeus
ENSRNOG00000048025	Cstf2	68	99.371	ENSCHOG00000012803	CSTF2	75	99.371	Choloepus_hoffmanni
ENSRNOG00000048025	Cstf2	100	74.441	ENSCPBG00000014293	CSTF2	100	74.367	Chrysemys_picta_bellii
ENSRNOG00000048025	Cstf2	100	92.522	ENSCANG00000030612	CSTF2	100	92.522	Colobus_angolensis_palliatus
ENSRNOG00000048025	Cstf2	100	97.414	ENSCGRG00001023023	Cstf2	100	97.414	Cricetulus_griseus_chok1gshd
ENSRNOG00000048025	Cstf2	100	95.130	ENSCGRG00000003897	Cstf2	100	95.130	Cricetulus_griseus_crigri
ENSRNOG00000048025	Cstf2	80	84.232	ENSCVAG00000005731	cstf2	96	60.832	Cyprinodon_variegatus
ENSRNOG00000048025	Cstf2	71	98.182	ENSDARG00000090788	cstf2	92	98.305	Danio_rerio
ENSRNOG00000048025	Cstf2	100	90.641	ENSDORG00000007195	Cstf2	100	90.641	Dipodomys_ordii
ENSRNOG00000048025	Cstf2	73	94.595	ENSETEG00000004931	CSTF2	68	94.595	Echinops_telfairi
ENSRNOG00000048025	Cstf2	99	91.412	ENSEASG00005001216	CSTF2	100	88.500	Equus_asinus_asinus
ENSRNOG00000048025	Cstf2	100	91.552	ENSECAG00000009325	CSTF2	100	91.552	Equus_caballus
ENSRNOG00000048025	Cstf2	100	91.207	ENSFCAG00000007000	CSTF2	100	91.207	Felis_catus
ENSRNOG00000048025	Cstf2	92	73.239	ENSFALG00000003859	CSTF2	100	73.592	Ficedula_albicollis
ENSRNOG00000048025	Cstf2	100	91.897	ENSFDAG00000002416	CSTF2	100	91.897	Fukomys_damarensis
ENSRNOG00000048025	Cstf2	87	80.894	ENSFHEG00000017065	cstf2	93	60.172	Fundulus_heteroclitus
ENSRNOG00000048025	Cstf2	99	55.862	ENSGMOG00000005145	cstf2	99	56.477	Gadus_morhua
ENSRNOG00000048025	Cstf2	100	78.253	ENSGALG00000006760	CSTF2	100	78.596	Gallus_gallus
ENSRNOG00000048025	Cstf2	99	54.576	ENSGACG00000017326	cstf2	94	83.673	Gasterosteus_aculeatus
ENSRNOG00000048025	Cstf2	100	76.393	ENSGAGG00000006037	CSTF2	100	76.299	Gopherus_agassizii
ENSRNOG00000048025	Cstf2	100	92.870	ENSGGOG00000022267	CSTF2	100	92.870	Gorilla_gorilla
ENSRNOG00000048025	Cstf2	100	92.069	ENSHGLG00000000659	-	100	92.069	Heterocephalus_glaber_female
ENSRNOG00000048025	Cstf2	100	79.130	ENSHGLG00000013455	-	100	79.130	Heterocephalus_glaber_female
ENSRNOG00000048025	Cstf2	100	92.069	ENSHGLG00100001130	-	100	92.069	Heterocephalus_glaber_male
ENSRNOG00000048025	Cstf2	100	79.304	ENSHGLG00100015391	-	100	79.304	Heterocephalus_glaber_male
ENSRNOG00000048025	Cstf2	99	59.897	ENSHCOG00000005157	cstf2	97	60.659	Hippocampus_comes
ENSRNOG00000048025	Cstf2	83	71.082	ENSIPUG00000017839	cstf2	99	59.625	Ictalurus_punctatus
ENSRNOG00000048025	Cstf2	100	91.897	ENSSTOG00000023445	CSTF2	100	91.897	Ictidomys_tridecemlineatus
ENSRNOG00000048025	Cstf2	100	93.276	ENSJJAG00000020507	Cstf2	100	93.276	Jaculus_jaculus
ENSRNOG00000048025	Cstf2	87	81.893	ENSKMAG00000001068	cstf2	96	58.262	Kryptolebias_marmoratus
ENSRNOG00000048025	Cstf2	54	94.915	ENSLBEG00000028720	cstf2	85	94.915	Labrus_bergylta
ENSRNOG00000048025	Cstf2	99	61.321	ENSLACG00000015927	CSTF2	99	62.829	Latimeria_chalumnae
ENSRNOG00000048025	Cstf2	98	76.389	ENSLOCG00000015300	cstf2	93	64.151	Lepisosteus_oculatus
ENSRNOG00000048025	Cstf2	100	89.138	ENSLAFG00000000474	CSTF2	100	89.138	Loxodonta_africana
ENSRNOG00000048025	Cstf2	100	92.522	ENSMFAG00000043888	CSTF2	100	92.522	Macaca_fascicularis
ENSRNOG00000048025	Cstf2	99	92.500	ENSMMUG00000013008	CSTF2	99	91.858	Macaca_mulatta
ENSRNOG00000048025	Cstf2	100	92.414	ENSMNEG00000041824	CSTF2	100	92.414	Macaca_nemestrina
ENSRNOG00000048025	Cstf2	100	92.522	ENSMLEG00000036870	CSTF2	100	92.522	Mandrillus_leucophaeus
ENSRNOG00000048025	Cstf2	78	81.116	ENSMAMG00000020364	cstf2	96	58.087	Mastacembelus_armatus
ENSRNOG00000048025	Cstf2	87	83.884	ENSMZEG00005007200	cstf2	96	60.862	Maylandia_zebra
ENSRNOG00000048025	Cstf2	92	72.199	ENSMGAG00000004139	CSTF2	99	67.446	Meleagris_gallopavo
ENSRNOG00000048025	Cstf2	100	97.414	ENSMAUG00000000965	Cstf2	100	97.414	Mesocricetus_auratus
ENSRNOG00000048025	Cstf2	100	93.391	ENSMICG00000014121	CSTF2	100	93.391	Microcebus_murinus
ENSRNOG00000048025	Cstf2	100	97.043	ENSMOCG00000008081	Cstf2	100	97.043	Microtus_ochrogaster
ENSRNOG00000048025	Cstf2	65	92.821	ENSMMOG00000000538	cstf2	96	52.496	Mola_mola
ENSRNOG00000048025	Cstf2	99	79.615	ENSMODG00000011785	CSTF2	100	77.815	Monodelphis_domestica
ENSRNOG00000048025	Cstf2	100	98.448	MGP_CAROLIEiJ_G0033383	Cstf2	100	98.448	Mus_caroli
ENSRNOG00000048025	Cstf2	100	98.276	ENSMUSG00000031256	Cstf2	100	98.276	Mus_musculus
ENSRNOG00000048025	Cstf2	100	98.276	MGP_PahariEiJ_G0031923	Cstf2	100	98.276	Mus_pahari
ENSRNOG00000048025	Cstf2	100	98.103	MGP_SPRETEiJ_G0034548	Cstf2	100	98.103	Mus_spretus
ENSRNOG00000048025	Cstf2	99	85.278	ENSMPUG00000002339	CSTF2	100	83.570	Mustela_putorius_furo
ENSRNOG00000048025	Cstf2	99	84.892	ENSMLUG00000004598	CSTF2	98	83.070	Myotis_lucifugus
ENSRNOG00000048025	Cstf2	100	95.172	ENSNGAG00000021985	Cstf2	100	95.172	Nannospalax_galili
ENSRNOG00000048025	Cstf2	93	63.457	ENSNBRG00000021694	cstf2	100	56.128	Neolamprologus_brichardi
ENSRNOG00000048025	Cstf2	100	92.522	ENSNLEG00000007510	CSTF2	100	92.522	Nomascus_leucogenys
ENSRNOG00000048025	Cstf2	100	80.522	ENSMEUG00000011186	-	100	82.087	Notamacropus_eugenii
ENSRNOG00000048025	Cstf2	91	77.863	ENSMEUG00000014025	-	100	79.008	Notamacropus_eugenii
ENSRNOG00000048025	Cstf2	100	76.348	ENSMEUG00000007875	-	100	77.391	Notamacropus_eugenii
ENSRNOG00000048025	Cstf2	87	80.995	ENSOPRG00000003106	CSTF2	87	80.995	Ochotona_princeps
ENSRNOG00000048025	Cstf2	100	90.862	ENSODEG00000002059	CSTF2	100	90.862	Octodon_degus
ENSRNOG00000048025	Cstf2	99	55.276	ENSONIG00000002631	cstf2	99	56.872	Oreochromis_niloticus
ENSRNOG00000048025	Cstf2	87	100.000	ENSOANG00000004208	CSTF2	87	92.857	Ornithorhynchus_anatinus
ENSRNOG00000048025	Cstf2	100	91.379	ENSOCUG00000010468	CSTF2	100	91.379	Oryctolagus_cuniculus
ENSRNOG00000048025	Cstf2	86	81.328	ENSORLG00000001380	cstf2	96	58.390	Oryzias_latipes
ENSRNOG00000048025	Cstf2	86	81.743	ENSORLG00020021917	cstf2	96	58.733	Oryzias_latipes_hni
ENSRNOG00000048025	Cstf2	86	81.328	ENSORLG00015011996	cstf2	96	58.390	Oryzias_latipes_hsok
ENSRNOG00000048025	Cstf2	86	82.573	ENSOMEG00000015507	cstf2	96	59.589	Oryzias_melastigma
ENSRNOG00000048025	Cstf2	99	85.791	ENSOGAG00000011192	CSTF2	100	83.544	Otolemur_garnettii
ENSRNOG00000048025	Cstf2	100	91.130	ENSOARG00000001022	CSTF2	100	91.130	Ovis_aries
ENSRNOG00000048025	Cstf2	100	92.870	ENSPPAG00000031804	CSTF2	100	92.870	Pan_paniscus
ENSRNOG00000048025	Cstf2	100	91.379	ENSPPRG00000022492	CSTF2	100	91.379	Panthera_pardus
ENSRNOG00000048025	Cstf2	100	91.034	ENSPTIG00000009922	CSTF2	100	91.034	Panthera_tigris_altaica
ENSRNOG00000048025	Cstf2	100	92.870	ENSPTRG00000022090	CSTF2	100	92.870	Pan_troglodytes
ENSRNOG00000048025	Cstf2	100	92.522	ENSPANG00000002303	CSTF2	100	92.522	Papio_anubis
ENSRNOG00000048025	Cstf2	99	63.432	ENSPKIG00000005033	cstf2	97	59.966	Paramormyrops_kingsleyae
ENSRNOG00000048025	Cstf2	99	58.722	ENSPMGG00000006534	cstf2	96	58.163	Periophthalmus_magnuspinnatus
ENSRNOG00000048025	Cstf2	100	96.379	ENSPEMG00000019415	Cstf2	100	96.379	Peromyscus_maniculatus_bairdii
ENSRNOG00000048025	Cstf2	99	79.924	ENSPCIG00000002989	CSTF2	100	77.430	Phascolarctos_cinereus
ENSRNOG00000048025	Cstf2	69	68.044	ENSPREG00000011481	cstf2	84	58.065	Poecilia_reticulata
ENSRNOG00000048025	Cstf2	99	92.366	ENSPPYG00000020541	CSTF2	100	89.500	Pongo_abelii
ENSRNOG00000048025	Cstf2	100	93.565	ENSPCOG00000027744	CSTF2	100	93.565	Propithecus_coquereli
ENSRNOG00000048025	Cstf2	97	76.607	ENSPVAG00000008342	CSTF2	100	76.607	Pteropus_vampyrus
ENSRNOG00000048025	Cstf2	99	61.938	ENSPNAG00000018887	cstf2	97	60.900	Pygocentrus_nattereri
ENSRNOG00000048025	Cstf2	100	90.783	ENSRBIG00000030745	CSTF2	100	90.783	Rhinopithecus_bieti
ENSRNOG00000048025	Cstf2	100	92.522	ENSRROG00000045042	CSTF2	100	92.522	Rhinopithecus_roxellana
ENSRNOG00000048025	Cstf2	100	91.897	ENSSBOG00000021649	CSTF2	100	91.897	Saimiri_boliviensis_boliviensis
ENSRNOG00000048025	Cstf2	95	98.214	ENSSHAG00000003681	CSTF2	92	77.720	Sarcophilus_harrisii
ENSRNOG00000048025	Cstf2	99	63.574	ENSSFOG00015006348	cstf2	97	63.293	Scleropages_formosus
ENSRNOG00000048025	Cstf2	82	63.470	ENSSMAG00000013463	cstf2	96	58.390	Scophthalmus_maximus
ENSRNOG00000048025	Cstf2	93	75.770	ENSSPUG00000005288	-	96	79.015	Sphenodon_punctatus
ENSRNOG00000048025	Cstf2	100	91.652	ENSSSCG00000012486	CSTF2	100	91.652	Sus_scrofa
ENSRNOG00000048025	Cstf2	100	78.173	ENSTGUG00000002253	CSTF2	100	78.511	Taeniopygia_guttata
ENSRNOG00000048025	Cstf2	99	60.513	ENSTNIG00000016860	cstf2	99	59.794	Tetraodon_nigroviridis
ENSRNOG00000048025	Cstf2	54	100.000	ENSTBEG00000010029	-	69	100.000	Tupaia_belangeri
ENSRNOG00000048025	Cstf2	100	91.724	ENSTTRG00000013556	CSTF2	100	91.724	Tursiops_truncatus
ENSRNOG00000048025	Cstf2	100	91.453	ENSUAMG00000026605	CSTF2	100	91.453	Ursus_americanus
ENSRNOG00000048025	Cstf2	100	85.913	ENSUMAG00000012417	CSTF2	100	93.426	Ursus_maritimus
ENSRNOG00000048025	Cstf2	73	91.837	ENSVPAG00000006466	CSTF2	72	91.837	Vicugna_pacos
ENSRNOG00000048025	Cstf2	100	91.379	ENSVVUG00000004717	CSTF2	100	91.379	Vulpes_vulpes
ENSRNOG00000048025	Cstf2	95	88.571	ENSXETG00000009642	cstf2	87	88.571	Xenopus_tropicalis
ENSRNOG00000048025	Cstf2	82	78.189	ENSXCOG00000016436	cstf2	83	96.970	Xiphophorus_couchianus
ENSRNOG00000048025	Cstf2	58	70.149	ENSXMAG00000013524	cstf2	97	59.864	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003674	molecular_function	-	ND	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	ISO	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	21873635.	IBA	Component
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	-	ISO	Component
GO:0006378	mRNA polyadenylation	-	IEA	Process
GO:0016604	nuclear body	-	IEA	Component
GO:0016604	nuclear body	-	ISO	Component
GO:0071920	cleavage body	-	ISO	Component
GO:0098789	pre-mRNA cleavage required for polyadenylation	21873635.	IBA	Process
GO:1990090	cellular response to nerve growth factor stimulus	23948079.	IEP	Process