EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000048356 (Gene tree)
Gene ID: 294066
Gene Symbol: RGD1308750
Alias: LOC294066
Full Name: similar to DNA segment%2C Chr 19%2C Brigham %26 Womens Genetics 1357 expressed
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 2093 bases
Position: chr16:70068378-70070470
Accession: 1308750
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000064504	CPL	PF08144.11	9.7e-53	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000073254	-	2093	-	ENSRNOP00000064504	647 (aa)	-	M0R548

Gene Model

Click here to download ENSRNOG00000048356's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000048356's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000048356	RGD1308750	100	99.227	ENSRNOG00000012574	Pum3	100	99.227

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000048356	RGD1308750	100	88.272	ENSG00000080608	PUM3	100	88.272	Homo_sapiens
ENSRNOG00000048356	RGD1308750	89	56.114	ENSAPOG00000020252	pum3	99	53.632	Acanthochromis_polyacanthus
ENSRNOG00000048356	RGD1308750	100	87.017	ENSAMEG00000012187	PUM3	100	87.017	Ailuropoda_melanoleuca
ENSRNOG00000048356	RGD1308750	86	55.080	ENSACIG00000009786	pum3	88	56.144	Amphilophus_citrinellus
ENSRNOG00000048356	RGD1308750	83	60.374	ENSAOCG00000004439	pum3	97	53.846	Amphiprion_ocellaris
ENSRNOG00000048356	RGD1308750	83	60.374	ENSAPEG00000020523	pum3	97	53.846	Amphiprion_percula
ENSRNOG00000048356	RGD1308750	83	61.308	ENSATEG00000005799	pum3	81	61.641	Anabas_testudineus
ENSRNOG00000048356	RGD1308750	96	72.347	ENSAPLG00000002920	PUM3	100	72.347	Anas_platyrhynchos
ENSRNOG00000048356	RGD1308750	93	66.777	ENSACAG00000003174	PUM3	99	68.771	Anolis_carolinensis
ENSRNOG00000048356	RGD1308750	100	89.026	ENSANAG00000024520	PUM3	100	89.026	Aotus_nancymaae
ENSRNOG00000048356	RGD1308750	99	54.884	ENSACLG00000001017	pum3	97	54.574	Astatotilapia_calliptera
ENSRNOG00000048356	RGD1308750	95	63.766	ENSAMXG00000020911	pum3	99	63.867	Astyanax_mexicanus
ENSRNOG00000048356	RGD1308750	100	87.172	ENSBTAG00000013357	PUM3	100	87.172	Bos_taurus
ENSRNOG00000048356	RGD1308750	75	32.797	WBGene00014165	puf-12	64	32.797	Caenorhabditis_elegans
ENSRNOG00000048356	RGD1308750	100	88.408	ENSCJAG00000010917	PUM3	100	88.408	Callithrix_jacchus
ENSRNOG00000048356	RGD1308750	100	86.553	ENSCAFG00000002035	PUM3	99	86.553	Canis_familiaris
ENSRNOG00000048356	RGD1308750	100	86.553	ENSCAFG00020026867	PUM3	99	86.553	Canis_lupus_dingo
ENSRNOG00000048356	RGD1308750	100	87.017	ENSCHIG00000021559	PUM3	100	87.017	Capra_hircus
ENSRNOG00000048356	RGD1308750	100	86.708	ENSTSYG00000007481	PUM3	100	86.708	Carlito_syrichta
ENSRNOG00000048356	RGD1308750	100	83.333	ENSCAPG00000010592	-	99	83.333	Cavia_aperea
ENSRNOG00000048356	RGD1308750	100	84.544	ENSCPOG00000008552	-	99	84.544	Cavia_porcellus
ENSRNOG00000048356	RGD1308750	100	88.563	ENSCCAG00000032650	PUM3	100	88.563	Cebus_capucinus
ENSRNOG00000048356	RGD1308750	100	88.563	ENSCATG00000024880	PUM3	100	88.563	Cercocebus_atys
ENSRNOG00000048356	RGD1308750	100	86.862	ENSCLAG00000011892	PUM3	99	86.862	Chinchilla_lanigera
ENSRNOG00000048356	RGD1308750	100	88.872	ENSCSAG00000008691	PUM3	100	88.872	Chlorocebus_sabaeus
ENSRNOG00000048356	RGD1308750	100	67.543	ENSCHOG00000002535	PUM3	95	67.543	Choloepus_hoffmanni
ENSRNOG00000048356	RGD1308750	100	70.634	ENSCPBG00000025470	PUM3	95	70.634	Chrysemys_picta_bellii
ENSRNOG00000048356	RGD1308750	81	41.499	ENSCING00000024199	-	87	42.159	Ciona_intestinalis
ENSRNOG00000048356	RGD1308750	86	39.931	ENSCSAVG00000006072	-	99	40.381	Ciona_savignyi
ENSRNOG00000048356	RGD1308750	100	88.872	ENSCANG00000006142	PUM3	100	88.872	Colobus_angolensis_palliatus
ENSRNOG00000048356	RGD1308750	100	91.499	ENSCGRG00001016402	Pum3	99	91.499	Cricetulus_griseus_chok1gshd
ENSRNOG00000048356	RGD1308750	100	91.499	ENSCGRG00000010207	Pum3	99	91.499	Cricetulus_griseus_crigri
ENSRNOG00000048356	RGD1308750	78	60.271	ENSCSEG00000001565	pum3	99	56.507	Cynoglossus_semilaevis
ENSRNOG00000048356	RGD1308750	62	51.111	ENSCVAG00000006550	pum3	95	51.111	Cyprinodon_variegatus
ENSRNOG00000048356	RGD1308750	99	64.330	ENSDARG00000087779	pum3	97	63.551	Danio_rerio
ENSRNOG00000048356	RGD1308750	100	74.615	ENSDNOG00000008157	PUM3	70	75.000	Dasypus_novemcinctus
ENSRNOG00000048356	RGD1308750	81	80.455	ENSETEG00000015331	PUM3	81	80.455	Echinops_telfairi
ENSRNOG00000048356	RGD1308750	81	40.713	ENSEBUG00000011586	pum3	76	41.440	Eptatretus_burgeri
ENSRNOG00000048356	RGD1308750	99	88.390	ENSEASG00005010350	PUM3	99	88.390	Equus_asinus_asinus
ENSRNOG00000048356	RGD1308750	99	88.545	ENSECAG00000017193	PUM3	100	88.408	Equus_caballus
ENSRNOG00000048356	RGD1308750	93	77.446	ENSEEUG00000010314	PUM3	100	77.446	Erinaceus_europaeus
ENSRNOG00000048356	RGD1308750	96	61.321	ENSELUG00000002215	pum3	98	61.321	Esox_lucius
ENSRNOG00000048356	RGD1308750	100	71.319	ENSFALG00000010509	PUM3	100	71.319	Ficedula_albicollis
ENSRNOG00000048356	RGD1308750	100	86.244	ENSFDAG00000021027	PUM3	99	86.244	Fukomys_damarensis
ENSRNOG00000048356	RGD1308750	89	58.377	ENSFHEG00000015576	pum3	98	58.377	Fundulus_heteroclitus
ENSRNOG00000048356	RGD1308750	83	59.701	ENSGMOG00000014217	pum3	97	59.542	Gadus_morhua
ENSRNOG00000048356	RGD1308750	99	69.739	ENSGALG00000010178	PUM3	100	69.739	Gallus_gallus
ENSRNOG00000048356	RGD1308750	55	59.945	ENSGAFG00000001930	pum3	62	59.945	Gambusia_affinis
ENSRNOG00000048356	RGD1308750	82	59.023	ENSGACG00000017878	pum3	96	59.125	Gasterosteus_aculeatus
ENSRNOG00000048356	RGD1308750	100	70.634	ENSGAGG00000018983	PUM3	99	71.292	Gopherus_agassizii
ENSRNOG00000048356	RGD1308750	100	88.717	ENSGGOG00000006143	PUM3	100	88.717	Gorilla_gorilla
ENSRNOG00000048356	RGD1308750	91	51.858	ENSHBUG00000012903	pum3	96	49.672	Haplochromis_burtoni
ENSRNOG00000048356	RGD1308750	100	86.244	ENSHGLG00000015868	-	99	86.244	Heterocephalus_glaber_female
ENSRNOG00000048356	RGD1308750	100	86.244	ENSHGLG00100018825	PUM3	100	86.244	Heterocephalus_glaber_male
ENSRNOG00000048356	RGD1308750	92	57.912	ENSHCOG00000010306	pum3	96	55.692	Hippocampus_comes
ENSRNOG00000048356	RGD1308750	87	67.257	ENSIPUG00000024801	pum3	99	63.810	Ictalurus_punctatus
ENSRNOG00000048356	RGD1308750	100	88.872	ENSSTOG00000009586	PUM3	99	88.872	Ictidomys_tridecemlineatus
ENSRNOG00000048356	RGD1308750	99	86.533	ENSJJAG00000012563	Pum3	99	86.667	Jaculus_jaculus
ENSRNOG00000048356	RGD1308750	94	55.882	ENSKMAG00000010277	pum3	99	55.086	Kryptolebias_marmoratus
ENSRNOG00000048356	RGD1308750	96	55.431	ENSLBEG00000012213	pum3	96	54.277	Labrus_bergylta
ENSRNOG00000048356	RGD1308750	100	65.850	ENSLACG00000008312	PUM3	100	65.850	Latimeria_chalumnae
ENSRNOG00000048356	RGD1308750	97	65.674	ENSLOCG00000012529	pum3	99	65.674	Lepisosteus_oculatus
ENSRNOG00000048356	RGD1308750	100	85.781	ENSLAFG00000017341	PUM3	99	85.781	Loxodonta_africana
ENSRNOG00000048356	RGD1308750	100	89.335	ENSMFAG00000001430	PUM3	100	89.335	Macaca_fascicularis
ENSRNOG00000048356	RGD1308750	99	89.474	ENSMMUG00000002362	PUM3	99	89.335	Macaca_mulatta
ENSRNOG00000048356	RGD1308750	100	89.335	ENSMNEG00000035288	PUM3	100	89.335	Macaca_nemestrina
ENSRNOG00000048356	RGD1308750	100	88.717	ENSMLEG00000034820	PUM3	100	88.717	Mandrillus_leucophaeus
ENSRNOG00000048356	RGD1308750	85	58.230	ENSMAMG00000022861	pum3	99	54.141	Mastacembelus_armatus
ENSRNOG00000048356	RGD1308750	96	55.590	ENSMZEG00005014205	pum3	95	53.519	Maylandia_zebra
ENSRNOG00000048356	RGD1308750	99	63.511	ENSMGAG00000002255	PUM3	99	64.522	Meleagris_gallopavo
ENSRNOG00000048356	RGD1308750	100	91.345	ENSMAUG00000009733	Pum3	99	91.345	Mesocricetus_auratus
ENSRNOG00000048356	RGD1308750	99	87.926	ENSMICG00000045916	PUM3	87	87.926	Microcebus_murinus
ENSRNOG00000048356	RGD1308750	100	91.963	ENSMOCG00000019519	-	99	91.963	Microtus_ochrogaster
ENSRNOG00000048356	RGD1308750	100	87.790	ENSMOCG00000014830	-	100	87.326	Microtus_ochrogaster
ENSRNOG00000048356	RGD1308750	92	52.922	ENSMMOG00000012184	pum3	99	51.174	Mola_mola
ENSRNOG00000048356	RGD1308750	100	67.961	ENSMODG00000015417	PUM3	86	74.595	Monodelphis_domestica
ENSRNOG00000048356	RGD1308750	83	59.626	ENSMALG00000022164	pum3	93	54.818	Monopterus_albus
ENSRNOG00000048356	RGD1308750	100	92.890	MGP_CAROLIEiJ_G0022845	Pum3	99	92.890	Mus_caroli
ENSRNOG00000048356	RGD1308750	100	92.581	ENSMUSG00000041360	Pum3	99	92.581	Mus_musculus
ENSRNOG00000048356	RGD1308750	99	93.344	MGP_PahariEiJ_G0014338	Pum3	99	93.344	Mus_pahari
ENSRNOG00000048356	RGD1308750	100	92.427	MGP_SPRETEiJ_G0023763	Pum3	99	92.427	Mus_spretus
ENSRNOG00000048356	RGD1308750	100	85.162	ENSMPUG00000005125	PUM3	100	85.162	Mustela_putorius_furo
ENSRNOG00000048356	RGD1308750	99	85.604	ENSMLUG00000002309	PUM3	99	85.604	Myotis_lucifugus
ENSRNOG00000048356	RGD1308750	100	85.824	ENSNGAG00000019468	Pum3	100	85.824	Nannospalax_galili
ENSRNOG00000048356	RGD1308750	91	54.104	ENSNBRG00000021370	pum3	79	58.847	Neolamprologus_brichardi
ENSRNOG00000048356	RGD1308750	100	88.872	ENSNLEG00000008712	PUM3	100	88.872	Nomascus_leucogenys
ENSRNOG00000048356	RGD1308750	75	59.548	ENSMEUG00000013606	-	96	59.504	Notamacropus_eugenii
ENSRNOG00000048356	RGD1308750	79	74.414	ENSOPRG00000004225	-	79	74.414	Ochotona_princeps
ENSRNOG00000048356	RGD1308750	100	85.471	ENSODEG00000003625	-	99	85.471	Octodon_degus
ENSRNOG00000048356	RGD1308750	100	80.308	ENSODEG00000016477	-	100	80.308	Octodon_degus
ENSRNOG00000048356	RGD1308750	99	54.419	ENSONIG00000012733	pum3	97	54.264	Oreochromis_niloticus
ENSRNOG00000048356	RGD1308750	81	77.883	ENSOANG00000014995	PUM3	97	77.883	Ornithorhynchus_anatinus
ENSRNOG00000048356	RGD1308750	99	85.248	ENSOCUG00000026104	-	100	85.248	Oryctolagus_cuniculus
ENSRNOG00000048356	RGD1308750	100	86.090	ENSOCUG00000004189	-	100	86.090	Oryctolagus_cuniculus
ENSRNOG00000048356	RGD1308750	94	54.098	ENSORLG00000014935	pum3	99	53.168	Oryzias_latipes
ENSRNOG00000048356	RGD1308750	94	54.098	ENSORLG00020002841	pum3	99	52.941	Oryzias_latipes_hni
ENSRNOG00000048356	RGD1308750	96	53.406	ENSORLG00015015906	pum3	99	53.096	Oryzias_latipes_hsok
ENSRNOG00000048356	RGD1308750	94	54.276	ENSOMEG00000009427	pum3	97	52.093	Oryzias_melastigma
ENSRNOG00000048356	RGD1308750	99	64.832	ENSOGAG00000033481	-	99	63.914	Otolemur_garnettii
ENSRNOG00000048356	RGD1308750	100	86.420	ENSOGAG00000008125	-	100	86.420	Otolemur_garnettii
ENSRNOG00000048356	RGD1308750	100	86.441	ENSOARG00000013337	PUM3	100	86.441	Ovis_aries
ENSRNOG00000048356	RGD1308750	100	88.580	ENSPPAG00000041337	PUM3	100	88.580	Pan_paniscus
ENSRNOG00000048356	RGD1308750	100	85.626	ENSPPRG00000000809	PUM3	100	85.626	Panthera_pardus
ENSRNOG00000048356	RGD1308750	100	85.935	ENSPTIG00000021934	PUM3	100	85.935	Panthera_tigris_altaica
ENSRNOG00000048356	RGD1308750	100	88.735	ENSPTRG00000020735	PUM3	100	88.735	Pan_troglodytes
ENSRNOG00000048356	RGD1308750	100	89.026	ENSPANG00000025118	PUM3	100	89.026	Papio_anubis
ENSRNOG00000048356	RGD1308750	99	63.456	ENSPKIG00000022249	pum3	99	64.901	Paramormyrops_kingsleyae
ENSRNOG00000048356	RGD1308750	100	71.097	ENSPSIG00000016272	PUM3	100	71.097	Pelodiscus_sinensis
ENSRNOG00000048356	RGD1308750	76	62.118	ENSPMGG00000021261	pum3	98	62.118	Periophthalmus_magnuspinnatus
ENSRNOG00000048356	RGD1308750	100	76.852	ENSPEMG00000019340	-	100	86.792	Peromyscus_maniculatus_bairdii
ENSRNOG00000048356	RGD1308750	100	74.756	ENSPCIG00000030598	PUM3	93	74.756	Phascolarctos_cinereus
ENSRNOG00000048356	RGD1308750	91	55.574	ENSPFOG00000001719	pum3	94	56.324	Poecilia_formosa
ENSRNOG00000048356	RGD1308750	91	56.672	ENSPLAG00000020010	pum3	89	57.241	Poecilia_latipinna
ENSRNOG00000048356	RGD1308750	92	55.702	ENSPMEG00000017451	pum3	93	56.436	Poecilia_mexicana
ENSRNOG00000048356	RGD1308750	51	46.759	ENSPREG00000019478	-	69	64.737	Poecilia_reticulata
ENSRNOG00000048356	RGD1308750	100	88.717	ENSPPYG00000019255	PUM3	100	88.717	Pongo_abelii
ENSRNOG00000048356	RGD1308750	100	73.107	ENSPCAG00000005797	PUM3	95	73.107	Procavia_capensis
ENSRNOG00000048356	RGD1308750	100	88.253	ENSPCOG00000027325	PUM3	100	88.253	Propithecus_coquereli
ENSRNOG00000048356	RGD1308750	100	83.462	ENSPVAG00000016135	PUM3	95	83.462	Pteropus_vampyrus
ENSRNOG00000048356	RGD1308750	96	55.745	ENSPNYG00000016124	pum3	99	54.969	Pundamilia_nyererei
ENSRNOG00000048356	RGD1308750	94	63.474	ENSPNAG00000026524	pum3	98	63.474	Pygocentrus_nattereri
ENSRNOG00000048356	RGD1308750	100	88.717	ENSRBIG00000036924	PUM3	100	88.717	Rhinopithecus_bieti
ENSRNOG00000048356	RGD1308750	100	88.872	ENSRROG00000041089	PUM3	100	88.872	Rhinopithecus_roxellana
ENSRNOG00000048356	RGD1308750	100	89.026	ENSSBOG00000028066	PUM3	100	89.026	Saimiri_boliviensis_boliviensis
ENSRNOG00000048356	RGD1308750	100	76.425	ENSSHAG00000003730	PUM3	100	76.425	Sarcophilus_harrisii
ENSRNOG00000048356	RGD1308750	94	63.651	ENSSFOG00015018778	pum3	98	63.651	Scleropages_formosus
ENSRNOG00000048356	RGD1308750	86	58.497	ENSSMAG00000013236	pum3	99	54.854	Scophthalmus_maximus
ENSRNOG00000048356	RGD1308750	96	56.381	ENSSDUG00000001887	pum3	94	55.503	Seriola_dumerili
ENSRNOG00000048356	RGD1308750	94	56.721	ENSSLDG00000015766	pum3	96	55.108	Seriola_lalandi_dorsalis
ENSRNOG00000048356	RGD1308750	96	82.229	ENSSARG00000000579	PUM3	100	82.229	Sorex_araneus
ENSRNOG00000048356	RGD1308750	100	68.161	ENSSPUG00000001707	PUM3	100	68.161	Sphenodon_punctatus
ENSRNOG00000048356	RGD1308750	96	54.254	ENSSPAG00000003976	pum3	97	53.406	Stegastes_partitus
ENSRNOG00000048356	RGD1308750	100	86.244	ENSSSCG00000005227	PUM3	99	86.606	Sus_scrofa
ENSRNOG00000048356	RGD1308750	100	70.479	ENSTGUG00000005339	PUM3	100	70.479	Taeniopygia_guttata
ENSRNOG00000048356	RGD1308750	96	55.793	ENSTRUG00000004074	pum3	79	62.049	Takifugu_rubripes
ENSRNOG00000048356	RGD1308750	90	58.935	ENSTNIG00000010325	pum3	98	58.101	Tetraodon_nigroviridis
ENSRNOG00000048356	RGD1308750	86	67.864	ENSTBEG00000013058	PUM3	86	67.864	Tupaia_belangeri
ENSRNOG00000048356	RGD1308750	100	78.671	ENSTTRG00000001062	PUM3	96	78.671	Tursiops_truncatus
ENSRNOG00000048356	RGD1308750	100	78.053	ENSUMAG00000018443	PUM3	99	80.835	Ursus_maritimus
ENSRNOG00000048356	RGD1308750	100	85.957	ENSVPAG00000010766	PUM3	99	85.957	Vicugna_pacos
ENSRNOG00000048356	RGD1308750	100	86.553	ENSVVUG00000006527	PUM3	99	86.553	Vulpes_vulpes
ENSRNOG00000048356	RGD1308750	99	58.679	ENSXETG00000011707	pum3	99	58.679	Xenopus_tropicalis
ENSRNOG00000048356	RGD1308750	91	54.651	ENSXCOG00000006725	pum3	99	53.987	Xiphophorus_couchianus
ENSRNOG00000048356	RGD1308750	91	56.601	ENSXMAG00000002926	pum3	90	56.441	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function