EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000048394 (Gene tree)
Gene ID: 100359967
Gene Symbol: Zfp560
Alias: LOC100359967
Full Name: zinc finger protein 560
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 3628 bases
Position: chr8:21380504-21384131
Accession: 2323078
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000066643	zf-C2H2	PF00096.26	3.2e-86	1	15
ENSRNOP00000066643	zf-C2H2	PF00096.26	3.2e-86	2	15
ENSRNOP00000066643	zf-C2H2	PF00096.26	3.2e-86	3	15
ENSRNOP00000066643	zf-C2H2	PF00096.26	3.2e-86	4	15
ENSRNOP00000066643	zf-C2H2	PF00096.26	3.2e-86	5	15
ENSRNOP00000066643	zf-C2H2	PF00096.26	3.2e-86	6	15
ENSRNOP00000066643	zf-C2H2	PF00096.26	3.2e-86	7	15
ENSRNOP00000066643	zf-C2H2	PF00096.26	3.2e-86	8	15
ENSRNOP00000066643	zf-C2H2	PF00096.26	3.2e-86	9	15
ENSRNOP00000066643	zf-C2H2	PF00096.26	3.2e-86	10	15
ENSRNOP00000066643	zf-C2H2	PF00096.26	3.2e-86	11	15
ENSRNOP00000066643	zf-C2H2	PF00096.26	3.2e-86	12	15
ENSRNOP00000066643	zf-C2H2	PF00096.26	3.2e-86	13	15
ENSRNOP00000066643	zf-C2H2	PF00096.26	3.2e-86	14	15
ENSRNOP00000066643	zf-C2H2	PF00096.26	3.2e-86	15	15
ENSRNOP00000066643	zf-met	PF12874.7	1e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000071010	-	3209	XM_006242584	ENSRNOP00000066643	639 (aa)	XP_006226373	M0RAT5

Gene Model

Click here to download ENSRNOG00000048394's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000048394's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000048394	Zfp560	71	44.762	ENSRNOG00000009594	Snai1	92	44.762
ENSRNOG00000048394	Zfp560	75	50.350	ENSRNOG00000043341	Zfp51	90	50.350
ENSRNOG00000048394	Zfp560	72	44.030	ENSRNOG00000047699	Snai2	52	44.030
ENSRNOG00000048394	Zfp560	84	59.677	ENSRNOG00000030517	Zfp879	68	59.677
ENSRNOG00000048394	Zfp560	74	55.319	ENSRNOG00000003455	Zfp13	75	55.319
ENSRNOG00000048394	Zfp560	70	47.170	ENSRNOG00000026116	Sall3	55	46.296
ENSRNOG00000048394	Zfp560	74	51.020	ENSRNOG00000015701	Rreb1	56	44.000
ENSRNOG00000048394	Zfp560	90	48.235	ENSRNOG00000061533	AABR07001926.3	96	48.235
ENSRNOG00000048394	Zfp560	74	36.810	ENSRNOG00000008239	Repin1	82	35.887
ENSRNOG00000048394	Zfp560	88	47.312	ENSRNOG00000024056	Zfp17	99	47.312
ENSRNOG00000048394	Zfp560	70	44.444	ENSRNOG00000013586	Snai3	54	44.444
ENSRNOG00000048394	Zfp560	99	57.904	ENSRNOG00000025937	Zfp26	96	57.904
ENSRNOG00000048394	Zfp560	67	32.727	ENSRNOG00000022730	Zfp57	71	32.727
ENSRNOG00000048394	Zfp560	76	42.598	ENSRNOG00000010436	Zbtb17	61	42.598
ENSRNOG00000048394	Zfp560	75	51.680	ENSRNOG00000042777	Zfp28	64	51.680
ENSRNOG00000048394	Zfp560	84	52.036	ENSRNOG00000027923	Mynn	68	50.259
ENSRNOG00000048394	Zfp560	76	42.893	ENSRNOG00000002713	Zfp672	93	42.893
ENSRNOG00000048394	Zfp560	68	36.058	ENSRNOG00000016279	Zfp865	71	36.058
ENSRNOG00000048394	Zfp560	75	48.507	ENSRNOG00000014712	Zfp39	60	48.507
ENSRNOG00000048394	Zfp560	94	48.325	ENSRNOG00000006684	Zfp317	95	48.363
ENSRNOG00000048394	Zfp560	78	52.667	ENSRNOG00000032625	AC118165.1	100	52.667
ENSRNOG00000048394	Zfp560	75	53.430	ENSRNOG00000029490	Znf768	59	53.214
ENSRNOG00000048394	Zfp560	73	33.730	ENSRNOG00000007576	Zfp597	64	33.730
ENSRNOG00000048394	Zfp560	76	55.460	ENSRNOG00000014331	Zfp810	87	55.460
ENSRNOG00000048394	Zfp560	75	35.670	ENSRNOG00000013460	Zfp319	93	36.887
ENSRNOG00000048394	Zfp560	78	51.179	ENSRNOG00000049259	LOC102549842	91	51.179
ENSRNOG00000048394	Zfp560	75	47.143	ENSRNOG00000028628	LOC100911196	78	33.066
ENSRNOG00000048394	Zfp560	85	56.557	ENSRNOG00000015188	AABR07053681.1	94	56.557
ENSRNOG00000048394	Zfp560	79	37.752	ENSRNOG00000055761	Zfp574	95	36.136
ENSRNOG00000048394	Zfp560	88	45.161	ENSRNOG00000017066	Zfp384	63	44.444
ENSRNOG00000048394	Zfp560	78	54.630	ENSRNOG00000022431	Zfp867	82	54.630
ENSRNOG00000048394	Zfp560	83	41.791	ENSRNOG00000029980	Zbtb16	57	41.791
ENSRNOG00000048394	Zfp560	81	47.312	ENSRNOG00000052406	LOC102552527	91	47.312
ENSRNOG00000048394	Zfp560	75	57.333	ENSRNOG00000030308	Zfp251	68	57.333
ENSRNOG00000048394	Zfp560	79	53.488	ENSRNOG00000019416	Zfp61	67	54.693
ENSRNOG00000048394	Zfp560	74	40.647	ENSRNOG00000023679	Prdm5	73	40.647
ENSRNOG00000048394	Zfp560	73	51.029	ENSRNOG00000019059	Zfp1	83	51.029
ENSRNOG00000048394	Zfp560	89	49.755	ENSRNOG00000016417	Zfp136	90	49.755

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000048394	Zfp560	82	85.014	ENSCPOG00000033345	-	100	85.014	Cavia_porcellus
ENSRNOG00000048394	Zfp560	99	86.625	ENSCGRG00001023858	Zfp560	85	86.625	Cricetulus_griseus_chok1gshd
ENSRNOG00000048394	Zfp560	99	86.625	ENSCGRG00000012088	Zfp560	85	86.625	Cricetulus_griseus_crigri
ENSRNOG00000048394	Zfp560	82	86.127	ENSFDAG00000008687	-	100	86.127	Fukomys_damarensis
ENSRNOG00000048394	Zfp560	100	77.554	ENSHGLG00000019054	-	100	85.838	Heterocephalus_glaber_female
ENSRNOG00000048394	Zfp560	100	77.554	ENSHGLG00100015134	-	94	77.554	Heterocephalus_glaber_male
ENSRNOG00000048394	Zfp560	99	78.145	ENSSTOG00000033893	-	94	78.145	Ictidomys_tridecemlineatus
ENSRNOG00000048394	Zfp560	100	76.762	ENSMOCG00000007908	Zfp560	85	75.587	Microtus_ochrogaster
ENSRNOG00000048394	Zfp560	100	82.031	ENSNGAG00000015897	Zfp560	85	82.031	Nannospalax_galili
ENSRNOG00000048394	Zfp560	82	86.087	ENSODEG00000017047	-	100	86.087	Octodon_degus
ENSRNOG00000048394	Zfp560	85	77.960	ENSOCUG00000029594	-	98	77.960	Oryctolagus_cuniculus
ENSRNOG00000048394	Zfp560	89	51.682	ENSOGAG00000025131	ZNF121	100	51.682	Otolemur_garnettii

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function