EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000048708 (Gene tree)
Gene ID: 679140
Gene Symbol: Exosc1
Alias: LOC679140
Full Name: exosome component 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 9562 bases
Position: chr1:261170229-261179790
Accession: 1591855
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000067627	EXOSC1	PF10447.9	5.7e-15	1	1
ENSRNOP00000064580	ECR1_N	PF14382.6	3.8e-09	1	1
ENSRNOP00000067627	ECR1_N	PF14382.6	5.1e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000074420	-	588	XM_003749119	ENSRNOP00000067627	195 (aa)	XP_001054866	M0RDC9
ENSRNOT00000072073	-	465	-	ENSRNOP00000064580	154 (aa)	-	M0R5B6

Gene Model

Click here to download ENSRNOG00000048708's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000048708's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000048708	Exosc1	100	96.753	ENSG00000171311	EXOSC1	100	95.897	Homo_sapiens
ENSRNOG00000048708	Exosc1	98	79.058	ENSAPOG00000007822	exosc1	98	79.058	Acanthochromis_polyacanthus
ENSRNOG00000048708	Exosc1	100	97.436	ENSAMEG00000000129	EXOSC1	100	97.436	Ailuropoda_melanoleuca
ENSRNOG00000048708	Exosc1	96	78.723	ENSACIG00000018956	exosc1	92	78.723	Amphilophus_citrinellus
ENSRNOG00000048708	Exosc1	98	79.058	ENSAOCG00000010699	exosc1	98	79.058	Amphiprion_ocellaris
ENSRNOG00000048708	Exosc1	92	69.832	ENSAPEG00000012690	exosc1	96	69.832	Amphiprion_percula
ENSRNOG00000048708	Exosc1	98	78.534	ENSATEG00000018683	exosc1	98	78.534	Anabas_testudineus
ENSRNOG00000048708	Exosc1	99	86.010	ENSACAG00000002101	EXOSC1	99	86.010	Anolis_carolinensis
ENSRNOG00000048708	Exosc1	100	98.052	ENSANAG00000034669	EXOSC1	100	98.052	Aotus_nancymaae
ENSRNOG00000048708	Exosc1	98	79.058	ENSACLG00000021243	exosc1	98	79.058	Astatotilapia_calliptera
ENSRNOG00000048708	Exosc1	98	80.628	ENSAMXG00000011116	exosc1	98	80.628	Astyanax_mexicanus
ENSRNOG00000048708	Exosc1	100	97.949	ENSBTAG00000012699	EXOSC1	100	97.949	Bos_taurus
ENSRNOG00000048708	Exosc1	92	32.447	WBGene00012966	exos-1	90	32.447	Caenorhabditis_elegans
ENSRNOG00000048708	Exosc1	100	98.052	ENSCJAG00000016586	EXOSC1	100	98.052	Callithrix_jacchus
ENSRNOG00000048708	Exosc1	100	96.923	ENSCAFG00000009068	EXOSC1	94	96.923	Canis_familiaris
ENSRNOG00000048708	Exosc1	100	96.923	ENSCAFG00020006002	EXOSC1	94	96.923	Canis_lupus_dingo
ENSRNOG00000048708	Exosc1	100	97.949	ENSCHIG00000015253	EXOSC1	100	97.949	Capra_hircus
ENSRNOG00000048708	Exosc1	100	98.052	ENSTSYG00000000760	EXOSC1	100	98.052	Carlito_syrichta
ENSRNOG00000048708	Exosc1	100	98.052	ENSCPOG00000001173	EXOSC1	100	98.052	Cavia_porcellus
ENSRNOG00000048708	Exosc1	100	59.627	ENSCCAG00000023986	EXOSC1	100	59.627	Cebus_capucinus
ENSRNOG00000048708	Exosc1	100	96.753	ENSCATG00000034114	EXOSC1	100	96.753	Cercocebus_atys
ENSRNOG00000048708	Exosc1	100	98.701	ENSCLAG00000002463	EXOSC1	100	98.701	Chinchilla_lanigera
ENSRNOG00000048708	Exosc1	100	95.385	ENSCSAG00000005870	EXOSC1	100	95.385	Chlorocebus_sabaeus
ENSRNOG00000048708	Exosc1	96	82.888	ENSCHOG00000006477	EXOSC1	100	82.888	Choloepus_hoffmanni
ENSRNOG00000048708	Exosc1	54	83.962	ENSCPBG00000011949	EXOSC1	88	83.962	Chrysemys_picta_bellii
ENSRNOG00000048708	Exosc1	95	55.615	ENSCING00000022734	-	89	55.615	Ciona_intestinalis
ENSRNOG00000048708	Exosc1	95	56.150	ENSCSAVG00000010865	-	95	56.150	Ciona_savignyi
ENSRNOG00000048708	Exosc1	100	96.753	ENSCANG00000034159	EXOSC1	100	96.753	Colobus_angolensis_palliatus
ENSRNOG00000048708	Exosc1	100	100.000	ENSCGRG00001000335	Exosc1	100	100.000	Cricetulus_griseus_chok1gshd
ENSRNOG00000048708	Exosc1	100	100.000	ENSCGRG00000011602	Exosc1	100	100.000	Cricetulus_griseus_crigri
ENSRNOG00000048708	Exosc1	98	67.016	ENSCSEG00000007895	exosc1	95	67.016	Cynoglossus_semilaevis
ENSRNOG00000048708	Exosc1	98	75.393	ENSCVAG00000016748	exosc1	98	75.393	Cyprinodon_variegatus
ENSRNOG00000048708	Exosc1	98	79.581	ENSDARG00000059841	exosc1	98	79.581	Danio_rerio
ENSRNOG00000048708	Exosc1	75	96.622	ENSDNOG00000007983	EXOSC1	100	96.622	Dasypus_novemcinctus
ENSRNOG00000048708	Exosc1	100	98.052	ENSDORG00000016528	Exosc1	100	98.052	Dipodomys_ordii
ENSRNOG00000048708	Exosc1	94	48.148	FBgn0032346	Csl4	92	48.148	Drosophila_melanogaster
ENSRNOG00000048708	Exosc1	100	96.410	ENSETEG00000002469	-	100	96.410	Echinops_telfairi
ENSRNOG00000048708	Exosc1	99	62.245	ENSEBUG00000008164	exosc1	98	62.245	Eptatretus_burgeri
ENSRNOG00000048708	Exosc1	100	87.179	ENSEASG00005008684	EXOSC1	100	87.179	Equus_asinus_asinus
ENSRNOG00000048708	Exosc1	61	76.471	ENSECAG00000010621	EXOSC1	71	76.471	Equus_caballus
ENSRNOG00000048708	Exosc1	100	96.410	ENSEEUG00000005647	EXOSC1	100	96.410	Erinaceus_europaeus
ENSRNOG00000048708	Exosc1	94	79.891	ENSELUG00000017369	exosc1	81	79.891	Esox_lucius
ENSRNOG00000048708	Exosc1	100	97.436	ENSFCAG00000040563	EXOSC1	94	97.436	Felis_catus
ENSRNOG00000048708	Exosc1	100	84.615	ENSFALG00000008450	EXOSC1	100	84.615	Ficedula_albicollis
ENSRNOG00000048708	Exosc1	100	97.436	ENSFDAG00000000846	EXOSC1	100	97.436	Fukomys_damarensis
ENSRNOG00000048708	Exosc1	98	75.393	ENSFHEG00000009154	exosc1	98	75.393	Fundulus_heteroclitus
ENSRNOG00000048708	Exosc1	98	79.058	ENSGMOG00000008993	exosc1	98	79.058	Gadus_morhua
ENSRNOG00000048708	Exosc1	100	73.333	ENSGALG00000039917	EXOSC1	100	88.356	Gallus_gallus
ENSRNOG00000048708	Exosc1	98	75.393	ENSGAFG00000010265	exosc1	94	75.393	Gambusia_affinis
ENSRNOG00000048708	Exosc1	98	79.058	ENSGACG00000018936	exosc1	98	79.058	Gasterosteus_aculeatus
ENSRNOG00000048708	Exosc1	100	86.154	ENSGAGG00000019192	EXOSC1	100	86.154	Gopherus_agassizii
ENSRNOG00000048708	Exosc1	100	84.103	ENSGGOG00000003099	EXOSC1	100	84.103	Gorilla_gorilla
ENSRNOG00000048708	Exosc1	98	79.058	ENSHBUG00000017857	exosc1	98	79.058	Haplochromis_burtoni
ENSRNOG00000048708	Exosc1	100	98.052	ENSHGLG00000016927	EXOSC1	100	98.052	Heterocephalus_glaber_female
ENSRNOG00000048708	Exosc1	100	98.052	ENSHGLG00100012208	EXOSC1	100	98.052	Heterocephalus_glaber_male
ENSRNOG00000048708	Exosc1	98	78.010	ENSHCOG00000019882	exosc1	98	78.010	Hippocampus_comes
ENSRNOG00000048708	Exosc1	98	79.581	ENSIPUG00000007685	exosc1	98	79.581	Ictalurus_punctatus
ENSRNOG00000048708	Exosc1	63	81.148	ENSSTOG00000029860	-	93	81.148	Ictidomys_tridecemlineatus
ENSRNOG00000048708	Exosc1	100	98.052	ENSSTOG00000006615	EXOSC1	100	98.052	Ictidomys_tridecemlineatus
ENSRNOG00000048708	Exosc1	100	97.436	ENSJJAG00000013311	Exosc1	100	97.436	Jaculus_jaculus
ENSRNOG00000048708	Exosc1	98	77.083	ENSKMAG00000001202	exosc1	81	77.083	Kryptolebias_marmoratus
ENSRNOG00000048708	Exosc1	98	78.534	ENSLBEG00000011448	exosc1	98	78.534	Labrus_bergylta
ENSRNOG00000048708	Exosc1	98	74.522	ENSLOCG00000003776	exosc1	99	74.522	Lepisosteus_oculatus
ENSRNOG00000048708	Exosc1	100	97.436	ENSLAFG00000015983	EXOSC1	100	97.436	Loxodonta_africana
ENSRNOG00000048708	Exosc1	100	96.753	ENSMFAG00000001493	EXOSC1	100	96.753	Macaca_fascicularis
ENSRNOG00000048708	Exosc1	100	96.753	ENSMMUG00000020028	EXOSC1	100	96.753	Macaca_mulatta
ENSRNOG00000048708	Exosc1	100	95.897	ENSMNEG00000029816	EXOSC1	100	95.897	Macaca_nemestrina
ENSRNOG00000048708	Exosc1	100	96.753	ENSMLEG00000027643	EXOSC1	100	96.753	Mandrillus_leucophaeus
ENSRNOG00000048708	Exosc1	98	79.581	ENSMAMG00000012200	exosc1	98	79.581	Mastacembelus_armatus
ENSRNOG00000048708	Exosc1	98	79.058	ENSMZEG00005007042	exosc1	98	79.058	Maylandia_zebra
ENSRNOG00000048708	Exosc1	100	87.179	ENSMAUG00000020462	-	100	87.179	Mesocricetus_auratus
ENSRNOG00000048708	Exosc1	100	97.403	ENSMICG00000007664	EXOSC1	100	97.403	Microcebus_murinus
ENSRNOG00000048708	Exosc1	100	100.000	ENSMOCG00000006004	-	100	100.000	Microtus_ochrogaster
ENSRNOG00000048708	Exosc1	97	93.158	ENSMOCG00000017124	-	97	93.158	Microtus_ochrogaster
ENSRNOG00000048708	Exosc1	99	75.817	ENSMMOG00000021403	exosc1	99	75.817	Mola_mola
ENSRNOG00000048708	Exosc1	100	91.837	ENSMODG00000004213	EXOSC1	100	91.837	Monodelphis_domestica
ENSRNOG00000048708	Exosc1	94	79.891	ENSMALG00000007061	exosc1	92	79.891	Monopterus_albus
ENSRNOG00000048708	Exosc1	100	99.487	MGP_CAROLIEiJ_G0022959	Exosc1	100	99.487	Mus_caroli
ENSRNOG00000048708	Exosc1	100	98.974	ENSMUSG00000034321	Exosc1	100	98.974	Mus_musculus
ENSRNOG00000048708	Exosc1	100	100.000	MGP_PahariEiJ_G0014449	Exosc1	100	100.000	Mus_pahari
ENSRNOG00000048708	Exosc1	100	99.487	MGP_SPRETEiJ_G0023880	Exosc1	100	99.487	Mus_spretus
ENSRNOG00000048708	Exosc1	100	97.436	ENSMPUG00000017044	EXOSC1	100	97.436	Mustela_putorius_furo
ENSRNOG00000048708	Exosc1	100	96.923	ENSMLUG00000009228	EXOSC1	100	96.923	Myotis_lucifugus
ENSRNOG00000048708	Exosc1	100	97.949	ENSNGAG00000022033	Exosc1	100	97.949	Nannospalax_galili
ENSRNOG00000048708	Exosc1	97	76.667	ENSNBRG00000024007	exosc1	97	76.667	Neolamprologus_brichardi
ENSRNOG00000048708	Exosc1	100	96.753	ENSNLEG00000013872	EXOSC1	100	96.753	Nomascus_leucogenys
ENSRNOG00000048708	Exosc1	59	89.565	ENSMEUG00000002246	EXOSC1	100	89.565	Notamacropus_eugenii
ENSRNOG00000048708	Exosc1	100	97.436	ENSOPRG00000005065	EXOSC1	100	97.436	Ochotona_princeps
ENSRNOG00000048708	Exosc1	100	98.052	ENSODEG00000016709	EXOSC1	100	98.052	Octodon_degus
ENSRNOG00000048708	Exosc1	98	79.058	ENSONIG00000017683	exosc1	98	79.058	Oreochromis_niloticus
ENSRNOG00000048708	Exosc1	59	92.174	ENSOANG00000006563	EXOSC1	98	90.323	Ornithorhynchus_anatinus
ENSRNOG00000048708	Exosc1	100	96.939	ENSOCUG00000011898	-	100	96.939	Oryctolagus_cuniculus
ENSRNOG00000048708	Exosc1	100	92.308	ENSOCUG00000026461	-	100	92.308	Oryctolagus_cuniculus
ENSRNOG00000048708	Exosc1	98	77.604	ENSORLG00000011595	exosc1	98	77.604	Oryzias_latipes
ENSRNOG00000048708	Exosc1	98	77.604	ENSORLG00020005831	exosc1	98	77.604	Oryzias_latipes_hni
ENSRNOG00000048708	Exosc1	98	77.604	ENSORLG00015004317	exosc1	98	77.604	Oryzias_latipes_hsok
ENSRNOG00000048708	Exosc1	97	64.162	ENSOMEG00000013907	exosc1	98	64.162	Oryzias_melastigma
ENSRNOG00000048708	Exosc1	100	97.436	ENSOGAG00000016259	EXOSC1	100	97.436	Otolemur_garnettii
ENSRNOG00000048708	Exosc1	100	97.436	ENSOARG00000010136	EXOSC1	100	97.436	Ovis_aries
ENSRNOG00000048708	Exosc1	100	96.753	ENSPPAG00000039842	EXOSC1	100	96.753	Pan_paniscus
ENSRNOG00000048708	Exosc1	100	97.436	ENSPPRG00000023366	EXOSC1	100	97.436	Panthera_pardus
ENSRNOG00000048708	Exosc1	100	97.436	ENSPTIG00000017701	EXOSC1	100	97.436	Panthera_tigris_altaica
ENSRNOG00000048708	Exosc1	100	96.753	ENSPTRG00000002808	EXOSC1	100	96.753	Pan_troglodytes
ENSRNOG00000048708	Exosc1	100	96.753	ENSPANG00000021324	EXOSC1	100	96.753	Papio_anubis
ENSRNOG00000048708	Exosc1	98	80.105	ENSPKIG00000016037	exosc1	98	80.105	Paramormyrops_kingsleyae
ENSRNOG00000048708	Exosc1	75	81.507	ENSPSIG00000013571	EXOSC1	98	81.148	Pelodiscus_sinensis
ENSRNOG00000048708	Exosc1	98	68.063	ENSPMGG00000014002	exosc1	98	68.063	Periophthalmus_magnuspinnatus
ENSRNOG00000048708	Exosc1	100	100.000	ENSPEMG00000010710	-	100	100.000	Peromyscus_maniculatus_bairdii
ENSRNOG00000048708	Exosc1	95	70.588	ENSPMAG00000000195	exosc1	95	70.588	Petromyzon_marinus
ENSRNOG00000048708	Exosc1	100	92.821	ENSPCIG00000002210	EXOSC1	99	92.821	Phascolarctos_cinereus
ENSRNOG00000048708	Exosc1	98	74.869	ENSPFOG00000006755	exosc1	94	74.869	Poecilia_formosa
ENSRNOG00000048708	Exosc1	98	74.869	ENSPLAG00000005880	exosc1	98	74.869	Poecilia_latipinna
ENSRNOG00000048708	Exosc1	98	74.869	ENSPMEG00000015598	exosc1	94	74.869	Poecilia_mexicana
ENSRNOG00000048708	Exosc1	98	65.969	ENSPREG00000000405	exosc1	93	65.969	Poecilia_reticulata
ENSRNOG00000048708	Exosc1	100	95.385	ENSPPYG00000002531	EXOSC1	100	95.385	Pongo_abelii
ENSRNOG00000048708	Exosc1	100	97.436	ENSPCAG00000009135	EXOSC1	100	97.436	Procavia_capensis
ENSRNOG00000048708	Exosc1	100	91.282	ENSPCOG00000027539	EXOSC1	100	91.282	Propithecus_coquereli
ENSRNOG00000048708	Exosc1	100	97.436	ENSPVAG00000003372	EXOSC1	100	97.436	Pteropus_vampyrus
ENSRNOG00000048708	Exosc1	98	79.058	ENSPNYG00000021745	exosc1	98	79.058	Pundamilia_nyererei
ENSRNOG00000048708	Exosc1	98	79.581	ENSPNAG00000001944	exosc1	98	79.581	Pygocentrus_nattereri
ENSRNOG00000048708	Exosc1	100	96.753	ENSRBIG00000035618	EXOSC1	100	96.753	Rhinopithecus_bieti
ENSRNOG00000048708	Exosc1	100	96.753	ENSRROG00000032589	EXOSC1	100	96.753	Rhinopithecus_roxellana
ENSRNOG00000048708	Exosc1	100	97.436	ENSSBOG00000000359	EXOSC1	100	97.436	Saimiri_boliviensis_boliviensis
ENSRNOG00000048708	Exosc1	75	94.558	ENSSHAG00000018219	EXOSC1	100	94.558	Sarcophilus_harrisii
ENSRNOG00000048708	Exosc1	97	76.842	ENSSFOG00015016289	-	98	76.842	Scleropages_formosus
ENSRNOG00000048708	Exosc1	98	81.675	ENSSFOG00015009069	exosc1	98	81.675	Scleropages_formosus
ENSRNOG00000048708	Exosc1	98	79.581	ENSSMAG00000003721	exosc1	98	79.581	Scophthalmus_maximus
ENSRNOG00000048708	Exosc1	98	79.581	ENSSDUG00000002993	exosc1	98	79.581	Seriola_dumerili
ENSRNOG00000048708	Exosc1	98	79.581	ENSSLDG00000025181	exosc1	98	79.581	Seriola_lalandi_dorsalis
ENSRNOG00000048708	Exosc1	100	83.077	ENSSARG00000000162	EXOSC1	100	83.077	Sorex_araneus
ENSRNOG00000048708	Exosc1	99	84.021	ENSSPUG00000012263	EXOSC1	99	84.021	Sphenodon_punctatus
ENSRNOG00000048708	Exosc1	98	70.681	ENSSPAG00000016792	exosc1	82	70.681	Stegastes_partitus
ENSRNOG00000048708	Exosc1	100	96.410	ENSSSCG00000010518	EXOSC1	91	96.410	Sus_scrofa
ENSRNOG00000048708	Exosc1	98	82.812	ENSTGUG00000009692	EXOSC1	99	82.812	Taeniopygia_guttata
ENSRNOG00000048708	Exosc1	97	73.016	ENSTRUG00000007706	exosc1	98	73.016	Takifugu_rubripes
ENSRNOG00000048708	Exosc1	97	72.917	ENSTNIG00000014079	exosc1	97	72.917	Tetraodon_nigroviridis
ENSRNOG00000048708	Exosc1	100	88.205	ENSTBEG00000006011	EXOSC1	100	88.205	Tupaia_belangeri
ENSRNOG00000048708	Exosc1	94	96.739	ENSTTRG00000009887	EXOSC1	100	96.739	Tursiops_truncatus
ENSRNOG00000048708	Exosc1	100	84.516	ENSUAMG00000010266	EXOSC1	100	84.516	Ursus_americanus
ENSRNOG00000048708	Exosc1	100	83.974	ENSUMAG00000022002	EXOSC1	100	83.974	Ursus_maritimus
ENSRNOG00000048708	Exosc1	100	96.923	ENSVVUG00000023192	EXOSC1	63	96.923	Vulpes_vulpes
ENSRNOG00000048708	Exosc1	98	79.688	ENSXETG00000003434	exosc1	99	79.688	Xenopus_tropicalis
ENSRNOG00000048708	Exosc1	62	84.167	ENSXCOG00000014499	exosc1	92	84.167	Xiphophorus_couchianus
ENSRNOG00000048708	Exosc1	98	66.492	ENSXMAG00000023382	exosc1	93	66.492	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000176	nuclear exosome (RNase complex)	21873635.	IBA	Component
GO:0000178	exosome (RNase complex)	-	ISO	Component
GO:0003723	RNA binding	-	IEA	Function
GO:0004532	exoribonuclease activity	-	ISO	Function
GO:0005730	nucleolus	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0006396	RNA processing	-	IEA	Process