EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000049370 (Gene tree)
Gene ID
498934
Gene Symbol
LOC100360750
Alias
LOC100361202|LOC498934|RGD1561937
Full Name
Sm protein F-like
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Plus strand
Length
14561 bases
Position
chr19:32770655-32785215
Accession
2321508
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000066203LSMPF01423.221.3e-1911
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000071471-2119XM_006255408ENSRNOP0000006620380 (aa)XP_006255470D3ZG07
Gene Model
Click here to download ENSRNOG00000049370's gene model file
Pathways
Pathway IDPathway NameSource
rno03018RNA degradationKEGG
rno03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000049370's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSRNOG00000049370LOC100360750100100.000ENSRNOG00000030374Lsm6100100.000
ENSRNOG00000049370LOC1003607508351.515ENSRNOG00000005556Snrpf7751.515
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000049370LOC100360750100100.000ENSG00000164167LSM6100100.000Homo_sapiens
ENSRNOG00000049370LOC10036075010095.000ENSAPOG00000019832lsm610095.000Acanthochromis_polyacanthus
ENSRNOG00000049370LOC100360750100100.000ENSAMEG00000016671LSM6100100.000Ailuropoda_melanoleuca
ENSRNOG00000049370LOC10036075010095.000ENSACIG00000016711lsm610095.000Amphilophus_citrinellus
ENSRNOG00000049370LOC10036075010095.000ENSAOCG00000002110lsm65295.000Amphiprion_ocellaris
ENSRNOG00000049370LOC10036075010095.000ENSAPEG00000023992lsm610095.000Amphiprion_percula
ENSRNOG00000049370LOC10036075010095.000ENSATEG00000012610lsm610095.000Anabas_testudineus
ENSRNOG00000049370LOC10036075096100.000ENSAPLG00000012594LSM699100.000Anas_platyrhynchos
ENSRNOG00000049370LOC100360750100100.000ENSACAG00000004004LSM6100100.000Anolis_carolinensis
ENSRNOG00000049370LOC100360750100100.000ENSANAG00000030568-100100.000Aotus_nancymaae
ENSRNOG00000049370LOC10036075010086.250ENSANAG00000021839-10086.250Aotus_nancymaae
ENSRNOG00000049370LOC10036075010095.000ENSACLG00000025621lsm610095.000Astatotilapia_calliptera
ENSRNOG00000049370LOC10036075010096.250ENSAMXG00000038738lsm610096.250Astyanax_mexicanus
ENSRNOG00000049370LOC10036075010093.750ENSBTAG00000052085-10093.750Bos_taurus
ENSRNOG00000049370LOC100360750100100.000ENSBTAG00000014060LSM6100100.000Bos_taurus
ENSRNOG00000049370LOC1003607509481.333WBGene00003080lsm-69781.333Caenorhabditis_elegans
ENSRNOG00000049370LOC100360750100100.000ENSCJAG00000002482LSM6100100.000Callithrix_jacchus
ENSRNOG00000049370LOC100360750100100.000ENSCAFG00000007738LSM6100100.000Canis_familiaris
ENSRNOG00000049370LOC100360750100100.000ENSCAFG00020025902LSM6100100.000Canis_lupus_dingo
ENSRNOG00000049370LOC10036075089100.000ENSCHIG00000012864-100100.000Capra_hircus
ENSRNOG00000049370LOC100360750100100.000ENSCHIG00000010334-100100.000Capra_hircus
ENSRNOG00000049370LOC10036075010083.750ENSCHIG00000024198-9583.750Capra_hircus
ENSRNOG00000049370LOC100360750100100.000ENSTSYG00000026972LSM6100100.000Carlito_syrichta
ENSRNOG00000049370LOC1003607509484.000ENSTSYG00000012759-8984.000Carlito_syrichta
ENSRNOG00000049370LOC100360750100100.000ENSCAPG00000008104LSM6100100.000Cavia_aperea
ENSRNOG00000049370LOC1003607508196.923ENSCAPG00000011179-10096.923Cavia_aperea
ENSRNOG00000049370LOC100360750100100.000ENSCPOG00000032655LSM6100100.000Cavia_porcellus
ENSRNOG00000049370LOC100360750100100.000ENSCCAG00000036437LSM6100100.000Cebus_capucinus
ENSRNOG00000049370LOC1003607509998.734ENSCCAG00000020665-9998.734Cebus_capucinus
ENSRNOG00000049370LOC10036075010072.500ENSCATG00000038799-10072.500Cercocebus_atys
ENSRNOG00000049370LOC100360750100100.000ENSCATG00000002770-100100.000Cercocebus_atys
ENSRNOG00000049370LOC100360750100100.000ENSCLAG00000005495LSM6100100.000Chinchilla_lanigera
ENSRNOG00000049370LOC1003607508980.282ENSCLAG00000005685-10080.282Chinchilla_lanigera
ENSRNOG00000049370LOC100360750100100.000ENSCSAG00000003421LSM6100100.000Chlorocebus_sabaeus
ENSRNOG00000049370LOC10036075010078.750ENSCHOG00000003420LSM610078.750Choloepus_hoffmanni
ENSRNOG00000049370LOC100360750100100.000ENSCPBG00000027472LSM684100.000Chrysemys_picta_bellii
ENSRNOG00000049370LOC1003607509596.053ENSCING00000019152-9396.053Ciona_intestinalis
ENSRNOG00000049370LOC1003607509597.368ENSCSAVG00000002065-9397.368Ciona_savignyi
ENSRNOG00000049370LOC100360750100100.000ENSCANG00000006849-100100.000Colobus_angolensis_palliatus
ENSRNOG00000049370LOC100360750100100.000ENSCANG00000041263-100100.000Colobus_angolensis_palliatus
ENSRNOG00000049370LOC10036075010071.250ENSCANG00000035214-10071.250Colobus_angolensis_palliatus
ENSRNOG00000049370LOC100360750100100.000ENSCGRG00001017142Lsm6100100.000Cricetulus_griseus_chok1gshd
ENSRNOG00000049370LOC100360750100100.000ENSCGRG00000008320Lsm6100100.000Cricetulus_griseus_crigri
ENSRNOG00000049370LOC10036075010095.000ENSCSEG00000000423lsm610095.000Cynoglossus_semilaevis
ENSRNOG00000049370LOC10036075010095.000ENSCVAG00000001592lsm610095.000Cyprinodon_variegatus
ENSRNOG00000049370LOC10036075010096.250ENSDARG00000036995lsm610096.250Danio_rerio
ENSRNOG00000049370LOC10036075010098.750ENSDNOG00000044848-10098.750Dasypus_novemcinctus
ENSRNOG00000049370LOC10036075086100.000ENSDNOG00000040186-74100.000Dasypus_novemcinctus
ENSRNOG00000049370LOC100360750100100.000ENSDORG00000000933Lsm6100100.000Dipodomys_ordii
ENSRNOG00000049370LOC1003607509685.714FBgn0034564CG93449785.714Drosophila_melanogaster
ENSRNOG00000049370LOC10036075060100.000ENSETEG00000013098LSM6100100.000Echinops_telfairi
ENSRNOG00000049370LOC10036075010098.750ENSEBUG00000017073lsm610098.750Eptatretus_burgeri
ENSRNOG00000049370LOC10036075086100.000ENSEASG00005001533LSM672100.000Equus_asinus_asinus
ENSRNOG00000049370LOC100360750100100.000ENSECAG00000021036LSM6100100.000Equus_caballus
ENSRNOG00000049370LOC1003607509972.152ENSEEUG00000002101LSM610072.152Erinaceus_europaeus
ENSRNOG00000049370LOC10036075010096.250ENSELUG00000014301LSM610096.250Esox_lucius
ENSRNOG00000049370LOC100360750100100.000ENSFCAG00000003047LSM6100100.000Felis_catus
ENSRNOG00000049370LOC100360750100100.000ENSFALG00000005509LSM692100.000Ficedula_albicollis
ENSRNOG00000049370LOC10036075010087.500ENSFDAG00000019073-10087.500Fukomys_damarensis
ENSRNOG00000049370LOC100360750100100.000ENSFDAG00000020913-100100.000Fukomys_damarensis
ENSRNOG00000049370LOC10036075010095.000ENSFHEG00000007948lsm610095.000Fundulus_heteroclitus
ENSRNOG00000049370LOC10036075010095.000ENSGMOG00000015550lsm610095.000Gadus_morhua
ENSRNOG00000049370LOC100360750100100.000ENSGALG00000009985LSM6100100.000Gallus_gallus
ENSRNOG00000049370LOC10036075010095.000ENSGAFG00000017763lsm610095.000Gambusia_affinis
ENSRNOG00000049370LOC1003607509996.203ENSGACG00000017223lsm69996.203Gasterosteus_aculeatus
ENSRNOG00000049370LOC100360750100100.000ENSGAGG00000020980LSM6100100.000Gopherus_agassizii
ENSRNOG00000049370LOC100360750100100.000ENSGGOG00000001310LSM6100100.000Gorilla_gorilla
ENSRNOG00000049370LOC10036075010095.000ENSHBUG00000008618lsm610095.000Haplochromis_burtoni
ENSRNOG00000049370LOC100360750100100.000ENSHGLG00000000205LSM6100100.000Heterocephalus_glaber_female
ENSRNOG00000049370LOC100360750100100.000ENSHGLG00100014341LSM6100100.000Heterocephalus_glaber_male
ENSRNOG00000049370LOC10036075010095.000ENSHCOG00000005591lsm610095.000Hippocampus_comes
ENSRNOG00000049370LOC10036075010095.000ENSIPUG00000004508lsm610095.000Ictalurus_punctatus
ENSRNOG00000049370LOC100360750100100.000ENSSTOG00000002678LSM6100100.000Ictidomys_tridecemlineatus
ENSRNOG00000049370LOC10036075010090.000ENSJJAG00000011211-10090.000Jaculus_jaculus
ENSRNOG00000049370LOC100360750100100.000ENSJJAG00000013845-100100.000Jaculus_jaculus
ENSRNOG00000049370LOC1003607509679.221ENSJJAG00000016942-9779.221Jaculus_jaculus
ENSRNOG00000049370LOC10036075010095.000ENSKMAG00000004105lsm610095.000Kryptolebias_marmoratus
ENSRNOG00000049370LOC10036075010095.000ENSLBEG00000018441lsm610095.000Labrus_bergylta
ENSRNOG00000049370LOC100360750100100.000ENSLACG00000006937LSM6100100.000Latimeria_chalumnae
ENSRNOG00000049370LOC10036075010095.000ENSLOCG00000017683-10095.000Lepisosteus_oculatus
ENSRNOG00000049370LOC10036075010096.250ENSLOCG00000008852lsm610096.250Lepisosteus_oculatus
ENSRNOG00000049370LOC100360750100100.000ENSLAFG00000001952LSM6100100.000Loxodonta_africana
ENSRNOG00000049370LOC100360750100100.000ENSMFAG00000033073LSM6100100.000Macaca_fascicularis
ENSRNOG00000049370LOC100360750100100.000ENSMNEG00000034820-100100.000Macaca_nemestrina
ENSRNOG00000049370LOC10036075010073.750ENSMNEG00000040412-10073.750Macaca_nemestrina
ENSRNOG00000049370LOC100360750100100.000ENSMLEG00000035153LSM6100100.000Mandrillus_leucophaeus
ENSRNOG00000049370LOC10036075010095.000ENSMAMG00000014029lsm610095.000Mastacembelus_armatus
ENSRNOG00000049370LOC10036075010095.000ENSMZEG00005009146lsm610095.000Maylandia_zebra
ENSRNOG00000049370LOC100360750100100.000ENSMGAG00000003802LSM6100100.000Meleagris_gallopavo
ENSRNOG00000049370LOC100360750100100.000ENSMAUG00000014938Lsm6100100.000Mesocricetus_auratus
ENSRNOG00000049370LOC100360750100100.000ENSMICG00000042599LSM6100100.000Microcebus_murinus
ENSRNOG00000049370LOC1003607509891.026ENSMICG00000047411-9291.026Microcebus_murinus
ENSRNOG00000049370LOC100360750100100.000ENSMOCG00000020049Lsm6100100.000Microtus_ochrogaster
ENSRNOG00000049370LOC10036075010088.750ENSMMOG00000007379-10088.750Mola_mola
ENSRNOG00000049370LOC10036075010095.000ENSMMOG00000005470lsm610095.000Mola_mola
ENSRNOG00000049370LOC100360750100100.000ENSMODG00000000526LSM6100100.000Monodelphis_domestica
ENSRNOG00000049370LOC10036075010095.000ENSMALG00000002419lsm610095.000Monopterus_albus
ENSRNOG00000049370LOC100360750100100.000MGP_CAROLIEiJ_G0031245Lsm6100100.000Mus_caroli
ENSRNOG00000049370LOC100360750100100.000ENSMUSG00000031683Lsm6100100.000Mus_musculus
ENSRNOG00000049370LOC100360750100100.000MGP_PahariEiJ_G0022851Lsm6100100.000Mus_pahari
ENSRNOG00000049370LOC100360750100100.000MGP_SPRETEiJ_G0032365Lsm6100100.000Mus_spretus
ENSRNOG00000049370LOC10036075099100.000ENSMPUG00000006936LSM692100.000Mustela_putorius_furo
ENSRNOG00000049370LOC100360750100100.000ENSMLUG00000026355LSM6100100.000Myotis_lucifugus
ENSRNOG00000049370LOC100360750100100.000ENSNGAG00000019116Lsm6100100.000Nannospalax_galili
ENSRNOG00000049370LOC10036075010095.000ENSNBRG00000004887lsm610095.000Neolamprologus_brichardi
ENSRNOG00000049370LOC100360750100100.000ENSNLEG00000005584LSM6100100.000Nomascus_leucogenys
ENSRNOG00000049370LOC10036075010098.750ENSOPRG00000011199LSM610098.750Ochotona_princeps
ENSRNOG00000049370LOC10036075010098.750ENSODEG00000002307-10098.750Octodon_degus
ENSRNOG00000049370LOC10036075010097.500ENSODEG00000020420-10097.500Octodon_degus
ENSRNOG00000049370LOC1003607509688.312ENSODEG00000018684-10088.312Octodon_degus
ENSRNOG00000049370LOC10036075010096.250ENSODEG00000019419-10096.250Octodon_degus
ENSRNOG00000049370LOC10036075010095.000ENSONIG00000010005lsm610095.000Oreochromis_niloticus
ENSRNOG00000049370LOC1003607509874.359ENSOANG00000006894-10074.359Ornithorhynchus_anatinus
ENSRNOG00000049370LOC1003607509874.359ENSOANG00000006895-10074.359Ornithorhynchus_anatinus
ENSRNOG00000049370LOC10036075010093.750ENSORLG00000024158lsm610093.750Oryzias_latipes
ENSRNOG00000049370LOC10036075010093.750ENSORLG00020017383lsm610093.750Oryzias_latipes_hni
ENSRNOG00000049370LOC10036075010093.750ENSORLG00015016903lsm610093.750Oryzias_latipes_hsok
ENSRNOG00000049370LOC10036075010095.000ENSOMEG00000000074lsm610095.000Oryzias_melastigma
ENSRNOG00000049370LOC100360750100100.000ENSOGAG00000026665-100100.000Otolemur_garnettii
ENSRNOG00000049370LOC100360750100100.000ENSOGAG00000033153-100100.000Otolemur_garnettii
ENSRNOG00000049370LOC1003607509993.671ENSOARG00000011641-9293.671Ovis_aries
ENSRNOG00000049370LOC10036075086100.000ENSOARG00000008509-88100.000Ovis_aries
ENSRNOG00000049370LOC100360750100100.000ENSPPAG00000037929LSM6100100.000Pan_paniscus
ENSRNOG00000049370LOC100360750100100.000ENSPPRG00000012806LSM6100100.000Panthera_pardus
ENSRNOG00000049370LOC100360750100100.000ENSPTIG00000019769LSM6100100.000Panthera_tigris_altaica
ENSRNOG00000049370LOC100360750100100.000ENSPTRG00000016488LSM6100100.000Pan_troglodytes
ENSRNOG00000049370LOC100360750100100.000ENSPANG00000006552LSM6100100.000Papio_anubis
ENSRNOG00000049370LOC10036075010096.250ENSPKIG00000016176lsm610096.250Paramormyrops_kingsleyae
ENSRNOG00000049370LOC100360750100100.000ENSPSIG00000016942LSM6100100.000Pelodiscus_sinensis
ENSRNOG00000049370LOC10036075010095.000ENSPMGG00000018004lsm610095.000Periophthalmus_magnuspinnatus
ENSRNOG00000049370LOC100360750100100.000ENSPEMG00000012410Lsm6100100.000Peromyscus_maniculatus_bairdii
ENSRNOG00000049370LOC10036075010098.750ENSPMAG00000006949lsm610098.750Petromyzon_marinus
ENSRNOG00000049370LOC100360750100100.000ENSPCIG00000023469LSM680100.000Phascolarctos_cinereus
ENSRNOG00000049370LOC10036075010095.000ENSPFOG00000008881lsm610095.000Poecilia_formosa
ENSRNOG00000049370LOC10036075010095.000ENSPLAG00000003202lsm610095.000Poecilia_latipinna
ENSRNOG00000049370LOC10036075010095.000ENSPMEG00000004000lsm610095.000Poecilia_mexicana
ENSRNOG00000049370LOC10036075010095.000ENSPREG00000023235lsm610095.000Poecilia_reticulata
ENSRNOG00000049370LOC100360750100100.000ENSPPYG00000015105LSM6100100.000Pongo_abelii
ENSRNOG00000049370LOC100360750100100.000ENSPCOG00000013899LSM6100100.000Propithecus_coquereli
ENSRNOG00000049370LOC10036075010095.000ENSPNYG00000012614lsm610095.000Pundamilia_nyererei
ENSRNOG00000049370LOC10036075010096.250ENSPNAG00000018779lsm610096.250Pygocentrus_nattereri
ENSRNOG00000049370LOC100360750100100.000ENSRBIG00000027878LSM6100100.000Rhinopithecus_bieti
ENSRNOG00000049370LOC100360750100100.000ENSRROG00000024868LSM6100100.000Rhinopithecus_roxellana
ENSRNOG00000049370LOC1003607509541.250YDR378C-9345.000Saccharomyces_cerevisiae
ENSRNOG00000049370LOC100360750100100.000ENSSBOG00000021229-100100.000Saimiri_boliviensis_boliviensis
ENSRNOG00000049370LOC10036075010073.750ENSSBOG00000028103-10073.750Saimiri_boliviensis_boliviensis
ENSRNOG00000049370LOC10036075010096.250ENSSFOG00015016480lsm610096.250Scleropages_formosus
ENSRNOG00000049370LOC10036075010095.000ENSSMAG00000004550lsm610095.000Scophthalmus_maximus
ENSRNOG00000049370LOC10036075010095.000ENSSDUG00000020459lsm65095.000Seriola_dumerili
ENSRNOG00000049370LOC1003607508697.101ENSSLDG00000004136-5997.101Seriola_lalandi_dorsalis
ENSRNOG00000049370LOC10036075010095.000ENSSLDG00000020533lsm68395.000Seriola_lalandi_dorsalis
ENSRNOG00000049370LOC10036075060100.000ENSSARG00000000689LSM6100100.000Sorex_araneus
ENSRNOG00000049370LOC100360750100100.000ENSSPUG00000008657LSM6100100.000Sphenodon_punctatus
ENSRNOG00000049370LOC10036075010095.000ENSSPAG00000003246lsm610095.000Stegastes_partitus
ENSRNOG00000049370LOC100360750100100.000ENSSSCG00000035973LSM6100100.000Sus_scrofa
ENSRNOG00000049370LOC100360750100100.000ENSTGUG00000002663LSM6100100.000Taeniopygia_guttata
ENSRNOG00000049370LOC10036075010095.000ENSTRUG00000023398lsm610095.000Takifugu_rubripes
ENSRNOG00000049370LOC10036075010095.000ENSTNIG00000017725lsm610095.000Tetraodon_nigroviridis
ENSRNOG00000049370LOC100360750100100.000ENSTTRG00000004609LSM6100100.000Tursiops_truncatus
ENSRNOG00000049370LOC1003607509891.026ENSUAMG00000014213LSM66491.026Ursus_americanus
ENSRNOG00000049370LOC1003607509891.026ENSUMAG00000015727LSM66491.026Ursus_maritimus
ENSRNOG00000049370LOC100360750100100.000ENSVPAG00000006922LSM6100100.000Vicugna_pacos
ENSRNOG00000049370LOC100360750100100.000ENSVVUG00000009254LSM668100.000Vulpes_vulpes
ENSRNOG00000049370LOC100360750100100.000ENSXETG00000023683lsm6100100.000Xenopus_tropicalis
ENSRNOG00000049370LOC10036075010095.000ENSXMAG00000009606lsm610095.000Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000398mRNA splicing, via spliceosome-IEAProcess
GO:0000398mRNA splicing, via spliceosome-ISOProcess
GO:0000932P-body21873635.IBAComponent
GO:0003674molecular_function-NDFunction
GO:0003723RNA binding-IEAFunction
GO:0005575cellular_component-NDComponent
GO:0005634nucleus-ISOComponent
GO:0005688U6 snRNP21873635.IBAComponent
GO:0005730nucleolus21873635.IBAComponent
GO:0005732small nucleolar ribonucleoprotein complex-IEAComponent
GO:0008150biological_process-NDProcess
GO:0030490maturation of SSU-rRNA21873635.IBAProcess
GO:0046540U4/U6 x U5 tri-snRNP complex21873635.IBAComponent
GO:0046540U4/U6 x U5 tri-snRNP complex-ISOComponent
GO:0071005U2-type precatalytic spliceosome-IEAComponent
GO:0071005U2-type precatalytic spliceosome-ISOComponent
GO:0120115Lsm2-8 complex-IEAComponent
GO:0120115Lsm2-8 complex-ISOComponent

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