EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000049913 (Gene tree)
Gene ID: 100910990
Gene Symbol: LOC100910990
Alias: swan
Full Name: copine-1-like
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 3099 bases
Position: chr3:152176095-152179193
Accession: 6495669
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000026700	RRM_1	PF00076.22	4e-29	1	3
ENSRNOP00000026700	RRM_1	PF00076.22	4e-29	2	3
ENSRNOP00000026700	RRM_1	PF00076.22	4e-29	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000026700	-	3099	XM_006235453	ENSRNOP00000026700	1032 (aa)	XP_006235515	Q6XLI7

Gene Model

Click here to download ENSRNOG00000049913's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000049913's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000049913	LOC100910990	100	100.000	ENSRNOG00000019723	Rbm12	100	100.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000049913	LOC100910990	97	92.725	ENSG00000244462	RBM12	100	97.902	Homo_sapiens
ENSRNOG00000049913	LOC100910990	93	95.060	ENSAMEG00000019189	RBM12	100	93.822	Ailuropoda_melanoleuca
ENSRNOG00000049913	LOC100910990	87	81.402	ENSACAG00000006330	RBM12	72	76.540	Anolis_carolinensis
ENSRNOG00000049913	LOC100910990	82	92.725	ENSANAG00000032596	RBM12	74	92.725	Aotus_nancymaae
ENSRNOG00000049913	LOC100910990	100	91.322	ENSBTAG00000044015	RBM12	74	92.603	Bos_taurus
ENSRNOG00000049913	LOC100910990	94	87.703	ENSCAFG00000008256	RBM12	98	95.712	Canis_familiaris
ENSRNOG00000049913	LOC100910990	86	95.448	ENSCAFG00020005650	RBM12	100	94.067	Canis_lupus_dingo
ENSRNOG00000049913	LOC100910990	97	92.672	ENSCHIG00000024592	RBM12	100	92.672	Capra_hircus
ENSRNOG00000049913	LOC100910990	99	86.623	ENSTSYG00000030563	RBM12	98	93.392	Carlito_syrichta
ENSRNOG00000049913	LOC100910990	100	85.934	ENSCPOG00000035170	RBM12	71	91.631	Cavia_porcellus
ENSRNOG00000049913	LOC100910990	93	90.469	ENSCCAG00000036056	-	98	90.469	Cebus_capucinus
ENSRNOG00000049913	LOC100910990	84	88.298	ENSCCAG00000035899	-	100	88.525	Cebus_capucinus
ENSRNOG00000049913	LOC100910990	97	92.297	ENSCATG00000030934	RBM12	73	92.297	Cercocebus_atys
ENSRNOG00000049913	LOC100910990	98	92.319	ENSCLAG00000017230	RBM12	76	92.319	Chinchilla_lanigera
ENSRNOG00000049913	LOC100910990	97	92.582	ENSCANG00000030552	RBM12	73	92.582	Colobus_angolensis_palliatus
ENSRNOG00000049913	LOC100910990	100	91.570	ENSCGRG00001021144	Rbm12	72	95.480	Cricetulus_griseus_chok1gshd
ENSRNOG00000049913	LOC100910990	100	91.570	ENSCGRG00000012719	Rbm12	72	95.480	Cricetulus_griseus_crigri
ENSRNOG00000049913	LOC100910990	100	79.284	ENSDORG00000000606	-	70	84.780	Dipodomys_ordii
ENSRNOG00000049913	LOC100910990	96	92.587	ENSDORG00000028509	-	76	91.631	Dipodomys_ordii
ENSRNOG00000049913	LOC100910990	98	93.723	ENSECAG00000021997	RBM12	100	93.723	Equus_caballus
ENSRNOG00000049913	LOC100910990	58	94.624	ENSEEUG00000008858	-	56	94.624	Erinaceus_europaeus
ENSRNOG00000049913	LOC100910990	97	92.725	ENSFDAG00000014663	RBM12	100	92.725	Fukomys_damarensis
ENSRNOG00000049913	LOC100910990	86	84.793	ENSGALG00000030253	RBM12	100	85.714	Gallus_gallus
ENSRNOG00000049913	LOC100910990	97	92.439	ENSGGOG00000028500	RBM12	73	92.439	Gorilla_gorilla
ENSRNOG00000049913	LOC100910990	100	92.120	ENSHGLG00000013208	RBM12	100	93.723	Heterocephalus_glaber_female
ENSRNOG00000049913	LOC100910990	80	96.082	ENSHGLG00100019158	RBM12	88	96.082	Heterocephalus_glaber_male
ENSRNOG00000049913	LOC100910990	100	89.875	ENSSTOG00000019739	RBM12	74	90.780	Ictidomys_tridecemlineatus
ENSRNOG00000049913	LOC100910990	93	76.741	ENSJJAG00000009879	-	51	85.714	Jaculus_jaculus
ENSRNOG00000049913	LOC100910990	97	92.630	ENSLAFG00000010341	RBM12	100	92.297	Loxodonta_africana
ENSRNOG00000049913	LOC100910990	97	92.439	ENSMFAG00000032583	RBM12	73	92.439	Macaca_fascicularis
ENSRNOG00000049913	LOC100910990	97	92.529	ENSMMUG00000020960	CPNE1	100	92.529	Macaca_mulatta
ENSRNOG00000049913	LOC100910990	97	92.439	ENSMNEG00000045365	RBM12	73	92.439	Macaca_nemestrina
ENSRNOG00000049913	LOC100910990	97	92.439	ENSMLEG00000032492	RBM12	73	92.439	Mandrillus_leucophaeus
ENSRNOG00000049913	LOC100910990	86	85.100	ENSMGAG00000001502	RBM12	100	86.022	Meleagris_gallopavo
ENSRNOG00000049913	LOC100910990	100	91.860	ENSMAUG00000012800	Rbm12	72	95.621	Mesocricetus_auratus
ENSRNOG00000049913	LOC100910990	97	80.142	ENSMICG00000029540	-	73	84.211	Microcebus_murinus
ENSRNOG00000049913	LOC100910990	91	94.385	ENSMICG00000032761	-	98	93.294	Microcebus_murinus
ENSRNOG00000049913	LOC100910990	100	91.570	ENSMOCG00000012950	Rbm12	71	95.056	Microtus_ochrogaster
ENSRNOG00000049913	LOC100910990	95	83.379	ENSMODG00000001591	RBM12	98	89.787	Monodelphis_domestica
ENSRNOG00000049913	LOC100910990	100	92.442	MGP_CAROLIEiJ_G0024551	Rbm12	100	94.283	Mus_caroli
ENSRNOG00000049913	LOC100910990	100	91.376	ENSMUSG00000089824	Rbm12	100	93.217	Mus_musculus
ENSRNOG00000049913	LOC100910990	100	93.120	MGP_PahariEiJ_G0025996	Rbm12	70	97.159	Mus_pahari
ENSRNOG00000049913	LOC100910990	100	89.639	MGP_SPRETEiJ_G0025473	Rbm12	100	94.283	Mus_spretus
ENSRNOG00000049913	LOC100910990	94	93.304	ENSMPUG00000017789	-	100	92.582	Mustela_putorius_furo
ENSRNOG00000049913	LOC100910990	98	93.295	ENSMLUG00000011217	RBM12	98	93.295	Myotis_lucifugus
ENSRNOG00000049913	LOC100910990	100	90.504	ENSNGAG00000015846	Rbm12	71	95.319	Nannospalax_galili
ENSRNOG00000049913	LOC100910990	97	92.725	ENSNLEG00000010268	RBM12	73	92.725	Nomascus_leucogenys
ENSRNOG00000049913	LOC100910990	93	82.231	ENSMEUG00000007621	RBM12	74	87.678	Notamacropus_eugenii
ENSRNOG00000049913	LOC100910990	98	90.999	ENSOPRG00000005687	RBM12	100	91.607	Ochotona_princeps
ENSRNOG00000049913	LOC100910990	100	91.228	ENSODEG00000013870	RBM12	72	92.766	Octodon_degus
ENSRNOG00000049913	LOC100910990	97	92.725	ENSPPAG00000040719	RBM12	73	92.725	Pan_paniscus
ENSRNOG00000049913	LOC100910990	97	92.725	ENSPTRG00000040708	-	73	92.725	Pan_troglodytes
ENSRNOG00000049913	LOC100910990	97	92.725	ENSPTRG00000013446	RBM12	73	92.725	Pan_troglodytes
ENSRNOG00000049913	LOC100910990	97	92.439	ENSPANG00000020003	CPNE1	73	92.439	Papio_anubis
ENSRNOG00000049913	LOC100910990	79	85.385	ENSPSIG00000007369	RBM12	71	81.250	Pelodiscus_sinensis
ENSRNOG00000049913	LOC100910990	100	91.957	ENSPEMG00000017769	Rbm12	70	96.028	Peromyscus_maniculatus_bairdii
ENSRNOG00000049913	LOC100910990	72	64.356	ENSPFOG00000023551	rbm12	96	78.873	Poecilia_formosa
ENSRNOG00000049913	LOC100910990	97	92.582	ENSPPYG00000010960	RBM12	75	92.582	Pongo_abelii
ENSRNOG00000049913	LOC100910990	93	92.341	ENSPCAG00000008653	RBM12	100	92.011	Procavia_capensis
ENSRNOG00000049913	LOC100910990	96	92.672	ENSPCOG00000023724	RBM12	98	92.672	Propithecus_coquereli
ENSRNOG00000049913	LOC100910990	83	93.295	ENSPVAG00000014937	RBM12	76	93.295	Pteropus_vampyrus
ENSRNOG00000049913	LOC100910990	97	92.582	ENSRBIG00000042965	RBM12	73	92.582	Rhinopithecus_bieti
ENSRNOG00000049913	LOC100910990	97	92.582	ENSRROG00000037485	RBM12	73	92.582	Rhinopithecus_roxellana
ENSRNOG00000049913	LOC100910990	82	92.725	ENSSBOG00000027633	RBM12	74	92.725	Saimiri_boliviensis_boliviensis
ENSRNOG00000049913	LOC100910990	95	83.379	ENSSHAG00000018585	RBM12	100	89.787	Sarcophilus_harrisii
ENSRNOG00000049913	LOC100910990	99	92.458	ENSSSCG00000036156	RBM12	75	93.314	Sus_scrofa
ENSRNOG00000049913	LOC100910990	86	86.000	ENSTGUG00000003002	RBM12	100	85.518	Taeniopygia_guttata
ENSRNOG00000049913	LOC100910990	98	92.867	ENSTTRG00000017035	RBM12	100	92.867	Tursiops_truncatus
ENSRNOG00000049913	LOC100910990	93	94.354	ENSUAMG00000010430	RBM12	75	93.010	Ursus_americanus
ENSRNOG00000049913	LOC100910990	87	100.000	ENSVPAG00000003812	RBM12	89	100.000	Vicugna_pacos
ENSRNOG00000049913	LOC100910990	86	63.570	ENSXETG00000033541	RBM12	72	62.291	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0030154	cell differentiation	-	IEA	Process