EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000050035 (Gene tree)
Gene ID: 686412
Gene Symbol: Sall4
Alias: LOC686412
Full Name: spalt-like transcription factor 4
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 17549 bases
Position: chr3:165520392-165537940
Accession: 1597672
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000067726	zf-C2H2	PF00096.26	9.5e-27	1	6
ENSRNOP00000067726	zf-C2H2	PF00096.26	9.5e-27	2	6
ENSRNOP00000067726	zf-C2H2	PF00096.26	9.5e-27	3	6
ENSRNOP00000067726	zf-C2H2	PF00096.26	9.5e-27	4	6
ENSRNOP00000067726	zf-C2H2	PF00096.26	9.5e-27	5	6
ENSRNOP00000067726	zf-C2H2	PF00096.26	9.5e-27	6	6
ENSRNOP00000066945	zf-C2H2	PF00096.26	5.6e-11	1	2
ENSRNOP00000066945	zf-C2H2	PF00096.26	5.6e-11	2	2
ENSRNOP00000067726	zf-met	PF12874.7	8.9e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000071119	-	3213	XM_003749632	ENSRNOP00000067726	1070 (aa)	XP_001074001	M0RDM1
ENSRNOT00000070964	-	849	-	ENSRNOP00000066945	282 (aa)	-	M0RBK6

Gene Model

Click here to download ENSRNOG00000050035's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000050035's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000050035	Sall4	51	51.020	ENSRNOG00000016417	Zfp136	72	51.020
ENSRNOG00000050035	Sall4	53	54.717	ENSRNOG00000025937	Zfp26	75	54.717
ENSRNOG00000050035	Sall4	95	63.462	ENSRNOG00000026116	Sall3	69	63.462
ENSRNOG00000050035	Sall4	53	47.727	ENSRNOG00000032625	AC118165.1	99	53.061
ENSRNOG00000050035	Sall4	100	53.234	ENSRNOG00000013907	Sall1	99	53.234

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000050035	Sall4	100	76.224	ENSG00000101115	SALL4	100	78.601	Homo_sapiens
ENSRNOG00000050035	Sall4	87	65.385	ENSAPOG00000002465	sall4	100	42.882	Acanthochromis_polyacanthus
ENSRNOG00000050035	Sall4	99	76.984	ENSAMEG00000013250	-	100	73.630	Ailuropoda_melanoleuca
ENSRNOG00000050035	Sall4	87	65.385	ENSACIG00000017298	sall4	100	41.258	Amphilophus_citrinellus
ENSRNOG00000050035	Sall4	99	65.385	ENSAOCG00000023678	sall4	100	42.894	Amphiprion_ocellaris
ENSRNOG00000050035	Sall4	99	65.385	ENSAPEG00000000751	sall4	100	42.722	Amphiprion_percula
ENSRNOG00000050035	Sall4	100	43.052	ENSATEG00000024480	sall4	100	42.588	Anabas_testudineus
ENSRNOG00000050035	Sall4	100	51.605	ENSAPLG00000006498	SALL4	100	51.990	Anas_platyrhynchos
ENSRNOG00000050035	Sall4	100	51.165	ENSACAG00000012748	SALL4	100	51.424	Anolis_carolinensis
ENSRNOG00000050035	Sall4	100	77.273	ENSANAG00000023352	SALL4	100	79.424	Aotus_nancymaae
ENSRNOG00000050035	Sall4	83	65.385	ENSACLG00000017851	sall4	100	41.509	Astatotilapia_calliptera
ENSRNOG00000050035	Sall4	83	62.500	ENSAMXG00000001254	sall4	99	42.665	Astyanax_mexicanus
ENSRNOG00000050035	Sall4	100	68.848	ENSBTAG00000003101	SALL4	100	69.032	Bos_taurus
ENSRNOG00000050035	Sall4	91	76.984	ENSCJAG00000000591	SALL4	99	74.914	Callithrix_jacchus
ENSRNOG00000050035	Sall4	96	92.000	ENSCAFG00000011738	-	100	73.611	Canis_familiaris
ENSRNOG00000050035	Sall4	96	92.000	ENSCAFG00020021870	SALL4	100	73.519	Canis_lupus_dingo
ENSRNOG00000050035	Sall4	97	70.803	ENSCHIG00000026270	SALL4	100	67.893	Capra_hircus
ENSRNOG00000050035	Sall4	100	76.016	ENSTSYG00000007359	SALL4	100	76.446	Carlito_syrichta
ENSRNOG00000050035	Sall4	100	80.081	ENSCAPG00000012135	SALL4	97	73.796	Cavia_aperea
ENSRNOG00000050035	Sall4	100	80.565	ENSCPOG00000036300	-	100	80.658	Cavia_porcellus
ENSRNOG00000050035	Sall4	100	70.047	ENSCCAG00000029512	-	100	72.893	Cebus_capucinus
ENSRNOG00000050035	Sall4	100	76.984	ENSCATG00000030757	SALL4	100	79.012	Cercocebus_atys
ENSRNOG00000050035	Sall4	100	86.667	ENSCLAG00000010479	SALL4	100	81.481	Chinchilla_lanigera
ENSRNOG00000050035	Sall4	100	85.714	ENSCSAG00000015269	SALL4	100	74.606	Chlorocebus_sabaeus
ENSRNOG00000050035	Sall4	100	63.462	ENSCPBG00000014995	SALL4	100	52.682	Chrysemys_picta_bellii
ENSRNOG00000050035	Sall4	100	85.714	ENSCANG00000036463	SALL4	100	74.421	Colobus_angolensis_palliatus
ENSRNOG00000050035	Sall4	100	82.979	ENSCGRG00001019569	Sall4	100	82.979	Cricetulus_griseus_chok1gshd
ENSRNOG00000050035	Sall4	100	82.270	ENSCGRG00000000462	Sall4	100	87.654	Cricetulus_griseus_crigri
ENSRNOG00000050035	Sall4	100	42.341	ENSCSEG00000014604	sall4	100	42.169	Cynoglossus_semilaevis
ENSRNOG00000050035	Sall4	100	43.310	ENSCVAG00000010815	sall4	100	43.053	Cyprinodon_variegatus
ENSRNOG00000050035	Sall4	89	57.812	ENSDARG00000044485	sall4	99	42.711	Danio_rerio
ENSRNOG00000050035	Sall4	100	74.597	ENSDNOG00000040633	SALL4	100	72.710	Dasypus_novemcinctus
ENSRNOG00000050035	Sall4	99	73.878	ENSDORG00000012841	Sall4	100	89.535	Dipodomys_ordii
ENSRNOG00000050035	Sall4	89	71.146	ENSETEG00000012475	-	64	74.000	Echinops_telfairi
ENSRNOG00000050035	Sall4	100	74.444	ENSECAG00000018533	SALL4	100	74.630	Equus_caballus
ENSRNOG00000050035	Sall4	100	70.539	ENSEEUG00000003649	SALL4	99	70.167	Erinaceus_europaeus
ENSRNOG00000050035	Sall4	83	65.385	ENSELUG00000005696	sall4	100	42.703	Esox_lucius
ENSRNOG00000050035	Sall4	100	76.923	ENSFCAG00000002822	SALL4	100	79.424	Felis_catus
ENSRNOG00000050035	Sall4	100	51.674	ENSFALG00000013149	SALL4	100	52.426	Ficedula_albicollis
ENSRNOG00000050035	Sall4	100	78.862	ENSFDAG00000017812	SALL4	100	79.424	Fukomys_damarensis
ENSRNOG00000050035	Sall4	83	65.385	ENSFHEG00000014187	sall4	100	43.141	Fundulus_heteroclitus
ENSRNOG00000050035	Sall4	100	42.634	ENSGMOG00000003822	sall4	100	42.437	Gadus_morhua
ENSRNOG00000050035	Sall4	100	51.593	ENSGALG00000041365	SALL4	100	51.983	Gallus_gallus
ENSRNOG00000050035	Sall4	100	42.760	ENSGAFG00000019925	sall4	100	42.845	Gambusia_affinis
ENSRNOG00000050035	Sall4	86	65.385	ENSGACG00000011124	sall4	100	40.700	Gasterosteus_aculeatus
ENSRNOG00000050035	Sall4	100	63.462	ENSGAGG00000002297	SALL4	100	52.509	Gopherus_agassizii
ENSRNOG00000050035	Sall4	100	76.573	ENSGGOG00000001832	SALL4	100	79.012	Gorilla_gorilla
ENSRNOG00000050035	Sall4	83	65.385	ENSHBUG00000007327	sall4	100	41.681	Haplochromis_burtoni
ENSRNOG00000050035	Sall4	91	80.488	ENSHGLG00000009043	SALL4	96	73.069	Heterocephalus_glaber_female
ENSRNOG00000050035	Sall4	91	80.488	ENSHGLG00100002722	SALL4	96	72.973	Heterocephalus_glaber_male
ENSRNOG00000050035	Sall4	87	55.769	ENSHCOG00000008519	sall4	100	41.804	Hippocampus_comes
ENSRNOG00000050035	Sall4	82	62.500	ENSIPUG00000019170	sall4	99	42.357	Ictalurus_punctatus
ENSRNOG00000050035	Sall4	99	85.185	ENSSTOG00000025002	SALL4	100	92.958	Ictidomys_tridecemlineatus
ENSRNOG00000050035	Sall4	100	81.754	ENSJJAG00000020688	Sall4	98	97.183	Jaculus_jaculus
ENSRNOG00000050035	Sall4	100	42.709	ENSKMAG00000002501	sall4	100	42.548	Kryptolebias_marmoratus
ENSRNOG00000050035	Sall4	100	43.553	ENSLBEG00000019951	sall4	100	43.456	Labrus_bergylta
ENSRNOG00000050035	Sall4	96	56.897	ENSLACG00000013898	SALL4	100	57.778	Latimeria_chalumnae
ENSRNOG00000050035	Sall4	83	63.462	ENSLOCG00000002427	sall4	100	45.904	Lepisosteus_oculatus
ENSRNOG00000050035	Sall4	100	74.797	ENSLAFG00000004309	SALL4	100	73.352	Loxodonta_africana
ENSRNOG00000050035	Sall4	100	85.714	ENSMFAG00000027169	SALL4	100	74.791	Macaca_fascicularis
ENSRNOG00000050035	Sall4	99	85.714	ENSMMUG00000003870	SALL4	100	79.012	Macaca_mulatta
ENSRNOG00000050035	Sall4	100	76.923	ENSMNEG00000035995	SALL4	100	79.012	Macaca_nemestrina
ENSRNOG00000050035	Sall4	100	85.714	ENSMLEG00000030467	SALL4	100	74.606	Mandrillus_leucophaeus
ENSRNOG00000050035	Sall4	87	65.385	ENSMAMG00000005223	sall4	100	42.119	Mastacembelus_armatus
ENSRNOG00000050035	Sall4	83	65.385	ENSMZEG00005023418	sall4	100	41.338	Maylandia_zebra
ENSRNOG00000050035	Sall4	78	63.462	ENSMGAG00000009344	SALL4	99	63.462	Meleagris_gallopavo
ENSRNOG00000050035	Sall4	100	83.688	ENSMAUG00000015814	Sall4	100	83.688	Mesocricetus_auratus
ENSRNOG00000050035	Sall4	100	78.169	ENSMICG00000000027	SALL4	100	78.189	Microcebus_murinus
ENSRNOG00000050035	Sall4	100	86.268	ENSMOCG00000018245	Sall4	100	94.521	Microtus_ochrogaster
ENSRNOG00000050035	Sall4	87	65.385	ENSMMOG00000014929	sall4	100	42.374	Mola_mola
ENSRNOG00000050035	Sall4	100	55.919	ENSMODG00000016387	SALL4	97	56.028	Monodelphis_domestica
ENSRNOG00000050035	Sall4	87	65.385	ENSMALG00000018709	sall4	100	42.416	Monopterus_albus
ENSRNOG00000050035	Sall4	100	90.071	MGP_CAROLIEiJ_G0024723	Sall4	100	97.222	Mus_caroli
ENSRNOG00000050035	Sall4	100	88.889	ENSMUSG00000027547	Sall4	100	97.222	Mus_musculus
ENSRNOG00000050035	Sall4	100	87.251	MGP_PahariEiJ_G0026164	Sall4	100	98.611	Mus_pahari
ENSRNOG00000050035	Sall4	100	89.362	MGP_SPRETEiJ_G0025643	Sall4	100	97.222	Mus_spretus
ENSRNOG00000050035	Sall4	97	85.185	ENSMPUG00000017543	SALL4	96	73.957	Mustela_putorius_furo
ENSRNOG00000050035	Sall4	96	72.297	ENSMLUG00000007060	-	100	71.911	Myotis_lucifugus
ENSRNOG00000050035	Sall4	98	57.384	ENSMLUG00000028073	-	99	52.372	Myotis_lucifugus
ENSRNOG00000050035	Sall4	100	65.736	ENSMLUG00000008405	-	100	65.363	Myotis_lucifugus
ENSRNOG00000050035	Sall4	100	81.272	ENSNGAG00000017833	Sall4	100	82.377	Nannospalax_galili
ENSRNOG00000050035	Sall4	83	65.385	ENSNBRG00000001829	sall4	100	41.860	Neolamprologus_brichardi
ENSRNOG00000050035	Sall4	100	85.714	ENSNLEG00000007013	SALL4	100	74.143	Nomascus_leucogenys
ENSRNOG00000050035	Sall4	83	63.462	ENSMEUG00000005793	-	99	63.462	Notamacropus_eugenii
ENSRNOG00000050035	Sall4	100	75.806	ENSOPRG00000011640	SALL4	100	71.811	Ochotona_princeps
ENSRNOG00000050035	Sall4	83	65.385	ENSONIG00000016557	sall4	100	41.566	Oreochromis_niloticus
ENSRNOG00000050035	Sall4	100	56.716	ENSOANG00000008667	SALL4	97	56.541	Ornithorhynchus_anatinus
ENSRNOG00000050035	Sall4	96	73.674	ENSOCUG00000011797	SALL4	100	73.288	Oryctolagus_cuniculus
ENSRNOG00000050035	Sall4	87	65.385	ENSORLG00000016130	sall4	100	42.882	Oryzias_latipes
ENSRNOG00000050035	Sall4	87	65.385	ENSORLG00020007339	sall4	100	42.894	Oryzias_latipes_hni
ENSRNOG00000050035	Sall4	100	43.041	ENSORLG00015002265	sall4	100	42.919	Oryzias_latipes_hsok
ENSRNOG00000050035	Sall4	100	43.269	ENSOMEG00000017344	sall4	100	42.832	Oryzias_melastigma
ENSRNOG00000050035	Sall4	94	73.628	ENSOGAG00000013799	SALL4	99	73.244	Otolemur_garnettii
ENSRNOG00000050035	Sall4	100	64.968	ENSOARG00000014570	SALL4	100	64.597	Ovis_aries
ENSRNOG00000050035	Sall4	100	76.573	ENSPPAG00000038064	SALL4	100	79.012	Pan_paniscus
ENSRNOG00000050035	Sall4	100	76.224	ENSPPRG00000008677	SALL4	100	78.601	Panthera_pardus
ENSRNOG00000050035	Sall4	100	76.573	ENSPTRG00000013631	SALL4	100	79.012	Pan_troglodytes
ENSRNOG00000050035	Sall4	100	76.923	ENSPANG00000021792	SALL4	100	79.012	Papio_anubis
ENSRNOG00000050035	Sall4	100	42.907	ENSPKIG00000007074	sall4	100	42.647	Paramormyrops_kingsleyae
ENSRNOG00000050035	Sall4	100	51.951	ENSPSIG00000009066	SALL4	100	52.468	Pelodiscus_sinensis
ENSRNOG00000050035	Sall4	100	41.873	ENSPMGG00000022551	sall4	100	41.379	Periophthalmus_magnuspinnatus
ENSRNOG00000050035	Sall4	100	97.500	ENSPEMG00000022706	Sall4	100	97.222	Peromyscus_maniculatus_bairdii
ENSRNOG00000050035	Sall4	100	54.271	ENSPCIG00000022838	SALL4	97	54.530	Phascolarctos_cinereus
ENSRNOG00000050035	Sall4	83	65.385	ENSPFOG00000001442	sall4	100	43.213	Poecilia_formosa
ENSRNOG00000050035	Sall4	83	65.385	ENSPLAG00000008760	sall4	100	43.127	Poecilia_latipinna
ENSRNOG00000050035	Sall4	83	65.385	ENSPMEG00000008497	sall4	100	42.894	Poecilia_mexicana
ENSRNOG00000050035	Sall4	87	65.385	ENSPREG00000021140	sall4	100	42.760	Poecilia_reticulata
ENSRNOG00000050035	Sall4	100	74.421	ENSPPYG00000011138	SALL4	100	74.235	Pongo_abelii
ENSRNOG00000050035	Sall4	100	68.241	ENSPCAG00000004726	SALL4	99	68.333	Procavia_capensis
ENSRNOG00000050035	Sall4	100	75.874	ENSPCOG00000016321	SALL4	100	78.189	Propithecus_coquereli
ENSRNOG00000050035	Sall4	93	72.211	ENSPVAG00000002075	SALL4	94	71.912	Pteropus_vampyrus
ENSRNOG00000050035	Sall4	83	65.385	ENSPNYG00000021738	sall4	100	41.445	Pundamilia_nyererei
ENSRNOG00000050035	Sall4	82	62.500	ENSPNAG00000020929	sall4	99	42.832	Pygocentrus_nattereri
ENSRNOG00000050035	Sall4	100	85.714	ENSRBIG00000039876	SALL4	100	74.769	Rhinopithecus_bieti
ENSRNOG00000050035	Sall4	100	85.714	ENSRROG00000036585	SALL4	100	74.421	Rhinopithecus_roxellana
ENSRNOG00000050035	Sall4	100	77.236	ENSSBOG00000030011	SALL4	100	77.778	Saimiri_boliviensis_boliviensis
ENSRNOG00000050035	Sall4	99	61.818	ENSSHAG00000018013	SALL4	89	61.818	Sarcophilus_harrisii
ENSRNOG00000050035	Sall4	88	63.462	ENSSFOG00015021075	sall4	100	42.957	Scleropages_formosus
ENSRNOG00000050035	Sall4	87	65.385	ENSSMAG00000019218	sall4	99	42.414	Scophthalmus_maximus
ENSRNOG00000050035	Sall4	87	65.385	ENSSDUG00000004657	sall4	100	41.353	Seriola_dumerili
ENSRNOG00000050035	Sall4	87	65.385	ENSSLDG00000004973	sall4	100	41.695	Seriola_lalandi_dorsalis
ENSRNOG00000050035	Sall4	87	65.385	ENSSPAG00000001978	sall4	100	42.869	Stegastes_partitus
ENSRNOG00000050035	Sall4	100	77.419	ENSSSCG00000007479	SALL4	100	72.736	Sus_scrofa
ENSRNOG00000050035	Sall4	100	54.305	ENSTGUG00000018244	-	100	55.592	Taeniopygia_guttata
ENSRNOG00000050035	Sall4	83	65.385	ENSTRUG00000007410	sall4	100	43.798	Takifugu_rubripes
ENSRNOG00000050035	Sall4	83	65.385	ENSTNIG00000012460	sall4	100	42.784	Tetraodon_nigroviridis
ENSRNOG00000050035	Sall4	96	70.793	ENSTTRG00000007753	SALL4	99	70.406	Tursiops_truncatus
ENSRNOG00000050035	Sall4	99	76.587	ENSUAMG00000010113	SALL4	100	73.723	Ursus_americanus
ENSRNOG00000050035	Sall4	99	78.049	ENSUMAG00000024274	SALL4	99	73.340	Ursus_maritimus
ENSRNOG00000050035	Sall4	87	61.818	ENSXETG00000012326	sall4	100	47.198	Xenopus_tropicalis
ENSRNOG00000050035	Sall4	100	40.653	ENSXCOG00000015467	sall4	100	40.567	Xiphophorus_couchianus
ENSRNOG00000050035	Sall4	100	40.541	ENSXMAG00000012692	sall4	100	40.455	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	-	IEA	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0000792	heterochromatin	-	IEA	Component
GO:0000792	heterochromatin	-	ISO	Component
GO:0001701	in utero embryonic development	-	ISO	Process
GO:0001833	inner cell mass cell proliferation	-	IEA	Process
GO:0001833	inner cell mass cell proliferation	-	ISO	Process
GO:0001843	neural tube closure	-	IEA	Process
GO:0001843	neural tube closure	-	ISO	Process
GO:0003281	ventricular septum development	-	IEA	Process
GO:0003281	ventricular septum development	-	ISO	Process
GO:0003674	molecular_function	-	ND	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0006355	regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0007507	heart development	-	ISO	Process
GO:0008134	transcription factor binding	-	IEA	Function
GO:0008134	transcription factor binding	-	ISO	Function
GO:0008150	biological_process	-	ND	Process
GO:0009888	tissue development	-	ISO	Process
GO:0019827	stem cell population maintenance	-	IEA	Process
GO:0019827	stem cell population maintenance	-	ISO	Process
GO:0021915	neural tube development	-	ISO	Process
GO:0030326	embryonic limb morphogenesis	-	IEA	Process
GO:0030326	embryonic limb morphogenesis	-	ISO	Process
GO:0032991	protein-containing complex	-	IEA	Component
GO:0032991	protein-containing complex	-	ISO	Component
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component
GO:0045944	positive regulation of transcription by RNA polymerase II	-	IEA	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process