EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000050289 (Gene tree)
Gene ID: 309338
Gene Symbol: Cstf2t
Alias: LOC309338
Full Name: cleavage stimulation factor subunit 2%2C tau variant
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 3567 bases
Position: chr1:249574954-249578520
Accession: 1310026
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000064966	RRM_1	PF00076.22	4.8e-25	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000074100	-	3567	-	ENSRNOP00000064966	629 (aa)	-	M0R6B9

Gene Model

Click here to download ENSRNOG00000050289's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000050289's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000050289	Cstf2t	99	64.961	ENSRNOG00000048025	Cstf2	99	65.993

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000050289	Cstf2t	100	88.013	ENSG00000177613	CSTF2T	100	88.013	Homo_sapiens
ENSRNOG00000050289	Cstf2t	100	86.414	ENSAMEG00000015766	CSTF2T	100	85.940	Ailuropoda_melanoleuca
ENSRNOG00000050289	Cstf2t	54	78.717	ENSANAG00000027508	-	89	79.825	Aotus_nancymaae
ENSRNOG00000050289	Cstf2t	100	84.650	ENSBTAG00000018406	CSTF2T	100	86.524	Bos_taurus
ENSRNOG00000050289	Cstf2t	54	78.299	ENSCJAG00000011554	-	97	78.299	Callithrix_jacchus
ENSRNOG00000050289	Cstf2t	54	71.848	ENSCJAG00000039083	-	93	73.900	Callithrix_jacchus
ENSRNOG00000050289	Cstf2t	91	100.000	ENSCAFG00000015567	CSTF2T	99	94.089	Canis_familiaris
ENSRNOG00000050289	Cstf2t	100	86.378	ENSCHIG00000016590	CSTF2T	80	87.977	Capra_hircus
ENSRNOG00000050289	Cstf2t	100	87.994	ENSTSYG00000007750	CSTF2T	100	87.994	Carlito_syrichta
ENSRNOG00000050289	Cstf2t	100	85.248	ENSCPOG00000004195	CSTF2T	100	85.093	Cavia_porcellus
ENSRNOG00000050289	Cstf2t	54	77.126	ENSCCAG00000020816	-	88	78.363	Cebus_capucinus
ENSRNOG00000050289	Cstf2t	54	78.006	ENSCATG00000041868	-	95	80.059	Cercocebus_atys
ENSRNOG00000050289	Cstf2t	100	87.907	ENSCLAG00000017916	CSTF2T	100	87.907	Chinchilla_lanigera
ENSRNOG00000050289	Cstf2t	100	88.486	ENSCSAG00000018437	CSTF2T	100	88.959	Chlorocebus_sabaeus
ENSRNOG00000050289	Cstf2t	69	90.580	ENSCHOG00000011888	-	68	90.580	Choloepus_hoffmanni
ENSRNOG00000050289	Cstf2t	53	77.679	ENSCANG00000005843	-	87	80.685	Colobus_angolensis_palliatus
ENSRNOG00000050289	Cstf2t	100	91.094	ENSCGRG00001003222	Cstf2t	100	87.793	Cricetulus_griseus_chok1gshd
ENSRNOG00000050289	Cstf2t	100	91.850	ENSCGRG00000008682	Cstf2t	100	89.655	Cricetulus_griseus_crigri
ENSRNOG00000050289	Cstf2t	100	85.804	ENSDNOG00000003283	CSTF2T	100	86.120	Dasypus_novemcinctus
ENSRNOG00000050289	Cstf2t	81	87.743	ENSDORG00000011245	Cstf2t	100	86.180	Dipodomys_ordii
ENSRNOG00000050289	Cstf2t	100	89.100	ENSEASG00005012929	CSTF2T	100	89.573	Equus_asinus_asinus
ENSRNOG00000050289	Cstf2t	100	88.715	ENSECAG00000004701	CSTF2T	100	89.342	Equus_caballus
ENSRNOG00000050289	Cstf2t	83	89.394	ENSELUG00000004079	-	76	88.265	Esox_lucius
ENSRNOG00000050289	Cstf2t	100	88.468	ENSFCAG00000046300	CSTF2T	100	88.784	Felis_catus
ENSRNOG00000050289	Cstf2t	100	83.437	ENSFDAG00000021170	CSTF2T	100	87.771	Fukomys_damarensis
ENSRNOG00000050289	Cstf2t	100	85.804	ENSGGOG00000036416	-	100	86.435	Gorilla_gorilla
ENSRNOG00000050289	Cstf2t	100	85.804	ENSGGOG00000042388	-	100	86.435	Gorilla_gorilla
ENSRNOG00000050289	Cstf2t	81	86.590	ENSHGLG00000015478	CSTF2T	82	87.006	Heterocephalus_glaber_female
ENSRNOG00000050289	Cstf2t	81	86.590	ENSHGLG00100000336	CSTF2T	100	87.211	Heterocephalus_glaber_male
ENSRNOG00000050289	Cstf2t	100	88.608	ENSSTOG00000026303	CSTF2T	100	88.924	Ictidomys_tridecemlineatus
ENSRNOG00000050289	Cstf2t	84	100.000	ENSJJAG00000019881	Cstf2t	100	75.394	Jaculus_jaculus
ENSRNOG00000050289	Cstf2t	100	79.621	ENSLAFG00000002058	CSTF2T	100	80.569	Loxodonta_africana
ENSRNOG00000050289	Cstf2t	53	77.844	ENSMFAG00000042009	-	93	80.374	Macaca_fascicularis
ENSRNOG00000050289	Cstf2t	54	77.485	ENSMMUG00000042906	-	99	79.532	Macaca_mulatta
ENSRNOG00000050289	Cstf2t	53	77.844	ENSMNEG00000031410	-	93	80.374	Macaca_nemestrina
ENSRNOG00000050289	Cstf2t	100	95.873	ENSMAUG00000006359	Cstf2t	100	95.873	Mesocricetus_auratus
ENSRNOG00000050289	Cstf2t	100	87.559	ENSMICG00000000867	-	100	87.244	Microcebus_murinus
ENSRNOG00000050289	Cstf2t	100	80.938	ENSMICG00000030551	-	100	83.953	Microcebus_murinus
ENSRNOG00000050289	Cstf2t	100	92.138	ENSMOCG00000020428	Cstf2t	100	92.767	Microtus_ochrogaster
ENSRNOG00000050289	Cstf2t	54	90.863	ENSMALG00000008842	-	98	52.987	Monopterus_albus
ENSRNOG00000050289	Cstf2t	100	97.302	MGP_CAROLIEiJ_G0022872	Cstf2t	100	97.302	Mus_caroli
ENSRNOG00000050289	Cstf2t	82	93.204	ENSMUSG00000053536	Cstf2t	100	90.596	Mus_musculus
ENSRNOG00000050289	Cstf2t	100	95.497	MGP_PahariEiJ_G0014365	Cstf2t	100	95.497	Mus_pahari
ENSRNOG00000050289	Cstf2t	100	96.395	MGP_SPRETEiJ_G0023790	Cstf2t	100	96.395	Mus_spretus
ENSRNOG00000050289	Cstf2t	100	87.204	ENSMPUG00000020141	CSTF2T	100	87.678	Mustela_putorius_furo
ENSRNOG00000050289	Cstf2t	100	84.733	ENSMLUG00000011187	-	100	85.191	Myotis_lucifugus
ENSRNOG00000050289	Cstf2t	100	79.055	ENSMLUG00000027140	-	100	79.370	Myotis_lucifugus
ENSRNOG00000050289	Cstf2t	100	90.521	ENSNGAG00000003304	Cstf2t	100	90.837	Nannospalax_galili
ENSRNOG00000050289	Cstf2t	100	83.673	ENSNLEG00000012025	CSTF2T	100	83.987	Nomascus_leucogenys
ENSRNOG00000050289	Cstf2t	100	81.649	ENSODEG00000012386	CSTF2T	100	80.715	Octodon_degus
ENSRNOG00000050289	Cstf2t	82	83.237	ENSOCUG00000004647	-	89	83.622	Oryctolagus_cuniculus
ENSRNOG00000050289	Cstf2t	100	85.893	ENSOGAG00000014565	CSTF2T	100	87.520	Otolemur_garnettii
ENSRNOG00000050289	Cstf2t	100	86.371	ENSOARG00000013688	-	80	89.143	Ovis_aries
ENSRNOG00000050289	Cstf2t	100	86.957	ENSOARG00000019124	-	100	88.043	Ovis_aries
ENSRNOG00000050289	Cstf2t	53	77.083	ENSPPAG00000032242	-	91	79.439	Pan_paniscus
ENSRNOG00000050289	Cstf2t	100	88.310	ENSPPRG00000018659	CSTF2T	100	88.310	Panthera_pardus
ENSRNOG00000050289	Cstf2t	100	85.759	ENSPTIG00000021145	CSTF2T	100	83.228	Panthera_tigris_altaica
ENSRNOG00000050289	Cstf2t	53	77.083	ENSPTRG00000043097	-	91	79.439	Pan_troglodytes
ENSRNOG00000050289	Cstf2t	53	77.844	ENSPANG00000029734	-	93	80.374	Papio_anubis
ENSRNOG00000050289	Cstf2t	99	51.657	ENSPFOG00000016756	CSTF2T	94	63.636	Poecilia_formosa
ENSRNOG00000050289	Cstf2t	100	88.836	ENSPPYG00000002441	CSTF2T	100	89.274	Pongo_abelii
ENSRNOG00000050289	Cstf2t	100	87.264	ENSPCAG00000000046	CSTF2T	100	88.522	Procavia_capensis
ENSRNOG00000050289	Cstf2t	99	86.867	ENSPCOG00000010982	CSTF2T	99	86.234	Propithecus_coquereli
ENSRNOG00000050289	Cstf2t	100	87.362	ENSPVAG00000006274	CSTF2T	100	87.046	Pteropus_vampyrus
ENSRNOG00000050289	Cstf2t	100	87.224	ENSRBIG00000029324	CSTF2T	100	87.539	Rhinopithecus_bieti
ENSRNOG00000050289	Cstf2t	100	87.382	ENSRROG00000042507	CSTF2T	100	87.697	Rhinopithecus_roxellana
ENSRNOG00000050289	Cstf2t	100	87.362	ENSSBOG00000022638	CSTF2T	100	87.678	Saimiri_boliviensis_boliviensis
ENSRNOG00000050289	Cstf2t	88	90.943	ENSSARG00000002013	-	87	90.566	Sorex_araneus
ENSRNOG00000050289	Cstf2t	100	90.047	ENSSSCG00000010430	CSTF2T	100	90.047	Sus_scrofa
ENSRNOG00000050289	Cstf2t	89	73.507	ENSTRUG00000004323	-	97	52.681	Takifugu_rubripes
ENSRNOG00000050289	Cstf2t	100	77.215	ENSTBEG00000014379	CSTF2T	100	77.567	Tupaia_belangeri
ENSRNOG00000050289	Cstf2t	100	88.942	ENSTTRG00000003341	CSTF2T	100	89.100	Tursiops_truncatus
ENSRNOG00000050289	Cstf2t	100	86.217	ENSUMAG00000011141	CSTF2T	80	89.714	Ursus_maritimus
ENSRNOG00000050289	Cstf2t	64	96.020	ENSVVUG00000002575	CSTF2T	98	95.652	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003674	molecular_function	-	ND	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	ISO	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	21873635.	IBA	Component
GO:0008150	biological_process	-	ND	Process
GO:0098789	pre-mRNA cleavage required for polyadenylation	21873635.	IBA	Process