EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000050323 (Gene tree)
Gene ID
689890
Gene Symbol
Srsf1
Alias
LOC689890|Sfrs1
Full Name
serine and arginine rich splicing factor 1
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Plus strand
Length
6052 bases
Position
chr10:75335146-75341197
Accession
1587490
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000064933RRM_1PF00076.221.4e-3312
ENSRNOP00000064933RRM_1PF00076.221.4e-3322
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000073005-5086XM_008768114ENSRNOP00000064933248 (aa)XP_008766336D4A9L2
Gene Model
Click here to download ENSRNOG00000050323's gene model file
Pathways
Pathway IDPathway NameSource
rno03040SpliceosomeKEGG
rno04657IL-17 signaling pathwayKEGG
rno05168Herpes simplex virus 1 infectionKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000050323's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSRNOG00000050323Srsf17841.627ENSRNOG00000006380Srsf65840.670
ENSRNOG00000050323Srsf19665.966ENSRNOG00000001163Srsf98268.750
ENSRNOG00000050323Srsf16546.988ENSRNOG00000005513Srsf56045.509
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000050323Srsf1100100.000ENSG00000136450SRSF1100100.000Homo_sapiens
ENSRNOG00000050323Srsf17991.133ENSAPOG00000008542-8189.655Acanthochromis_polyacanthus
ENSRNOG00000050323Srsf17891.710ENSAPOG00000002748-7889.119Acanthochromis_polyacanthus
ENSRNOG00000050323Srsf110097.177ENSAMEG00000002635SRSF110097.177Ailuropoda_melanoleuca
ENSRNOG00000050323Srsf17891.710ENSACIG00000008091srsf1a8389.637Amphilophus_citrinellus
ENSRNOG00000050323Srsf17892.228ENSAOCG00000010671-8390.155Amphiprion_ocellaris
ENSRNOG00000050323Srsf17991.133ENSAOCG00000000337-8289.655Amphiprion_ocellaris
ENSRNOG00000050323Srsf17892.228ENSAPEG00000009915-8390.155Amphiprion_percula
ENSRNOG00000050323Srsf17991.133ENSAPEG00000023352-8189.655Amphiprion_percula
ENSRNOG00000050323Srsf18287.192ENSATEG00000021567-8188.325Anabas_testudineus
ENSRNOG00000050323Srsf17892.228ENSATEG00000022403-7790.155Anabas_testudineus
ENSRNOG00000050323Srsf110098.387ENSACAG00000005542-10098.387Anolis_carolinensis
ENSRNOG00000050323Srsf199100.000ENSANAG00000020583-9998.611Aotus_nancymaae
ENSRNOG00000050323Srsf18173.500ENSANAG00000025417-7571.574Aotus_nancymaae
ENSRNOG00000050323Srsf19491.632ENSAMXG00000035996srsf1a7992.965Astyanax_mexicanus
ENSRNOG00000050323Srsf15478.065ENSAMXG00000024373-7276.282Astyanax_mexicanus
ENSRNOG00000050323Srsf1100100.000ENSBTAG00000014766SRSF1100100.000Bos_taurus
ENSRNOG00000050323Srsf199100.000ENSCJAG00000041713-9998.611Callithrix_jacchus
ENSRNOG00000050323Srsf17991.837ENSCJAG00000008111-8891.371Callithrix_jacchus
ENSRNOG00000050323Srsf199100.000ENSCAFG00000017430SRSF197100.000Canis_familiaris
ENSRNOG00000050323Srsf199100.000ENSCAFG00020025632-97100.000Canis_lupus_dingo
ENSRNOG00000050323Srsf1100100.000ENSCHIG00000010787SRSF1100100.000Capra_hircus
ENSRNOG00000050323Srsf199100.000ENSTSYG00000013899-9998.611Carlito_syrichta
ENSRNOG00000050323Srsf1100100.000ENSCPOG00000032681-100100.000Cavia_porcellus
ENSRNOG00000050323Srsf1100100.000ENSCCAG00000029484-100100.000Cebus_capucinus
ENSRNOG00000050323Srsf199100.000ENSCATG00000042294-9998.611Cercocebus_atys
ENSRNOG00000050323Srsf1100100.000ENSCLAG00000014707-100100.000Chinchilla_lanigera
ENSRNOG00000050323Srsf19999.187ENSCSAG00000005642-9799.187Chlorocebus_sabaeus
ENSRNOG00000050323Srsf1100100.000ENSCHOG00000001899SRSF1100100.000Choloepus_hoffmanni
ENSRNOG00000050323Srsf110098.790ENSCPBG00000009851-10098.790Chrysemys_picta_bellii
ENSRNOG00000050323Srsf199100.000ENSCANG00000029726-9998.611Colobus_angolensis_palliatus
ENSRNOG00000050323Srsf199100.000ENSCGRG00001000670Srsf197100.000Cricetulus_griseus_chok1gshd
ENSRNOG00000050323Srsf1100100.000ENSCGRG00000005590Srsf1100100.000Cricetulus_griseus_crigri
ENSRNOG00000050323Srsf17891.327ENSCSEG00000014272-8186.528Cynoglossus_semilaevis
ENSRNOG00000050323Srsf17983.962ENSCSEG00000009973-8183.019Cynoglossus_semilaevis
ENSRNOG00000050323Srsf17889.744ENSCVAG00000005458-9189.617Cyprinodon_variegatus
ENSRNOG00000050323Srsf17892.228ENSCVAG00000018617-7890.155Cyprinodon_variegatus
ENSRNOG00000050323Srsf17889.706ENSDARG00000057691srsf1a9987.958Danio_rerio
ENSRNOG00000050323Srsf19996.735ENSDARG00000017843srsf1b9996.735Danio_rerio
ENSRNOG00000050323Srsf199100.000ENSDNOG00000011737-97100.000Dasypus_novemcinctus
ENSRNOG00000050323Srsf1100100.000ENSDORG00000015082Srsf1100100.000Dipodomys_ordii
ENSRNOG00000050323Srsf17498.913ENSETEG00000005349-6398.913Echinops_telfairi
ENSRNOG00000050323Srsf199100.000ENSEASG00005002922-97100.000Equus_asinus_asinus
ENSRNOG00000050323Srsf1100100.000ENSECAG00000016654SRSF1100100.000Equus_caballus
ENSRNOG00000050323Srsf174100.000ENSEEUG00000009255-63100.000Erinaceus_europaeus
ENSRNOG00000050323Srsf17893.299ENSELUG00000021646srsf1a7789.691Esox_lucius
ENSRNOG00000050323Srsf199100.000ENSFCAG00000002250-97100.000Felis_catus
ENSRNOG00000050323Srsf19981.707ENSFALG00000005062-9781.707Ficedula_albicollis
ENSRNOG00000050323Srsf1100100.000ENSFDAG00000010646-100100.000Fukomys_damarensis
ENSRNOG00000050323Srsf17892.228ENSFHEG00000003174srsf1a8390.155Fundulus_heteroclitus
ENSRNOG00000050323Srsf18089.394ENSGMOG00000014787-8086.528Gadus_morhua
ENSRNOG00000050323Srsf110098.790ENSGALG00000005525SRSF110098.790Gallus_gallus
ENSRNOG00000050323Srsf17986.802ENSGACG00000020621srsf1b8084.772Gasterosteus_aculeatus
ENSRNOG00000050323Srsf19998.780ENSGAGG00000022965-9798.780Gopherus_agassizii
ENSRNOG00000050323Srsf199100.000ENSGGOG00000004386SRSF19998.611Gorilla_gorilla
ENSRNOG00000050323Srsf17891.710ENSHBUG00000016788srsf1a8089.637Haplochromis_burtoni
ENSRNOG00000050323Srsf187100.000ENSHGLG00000000600-100100.000Heterocephalus_glaber_female
ENSRNOG00000050323Srsf187100.000ENSHGLG00000000669-100100.000Heterocephalus_glaber_female
ENSRNOG00000050323Srsf1100100.000ENSHGLG00100016906-100100.000Heterocephalus_glaber_male
ENSRNOG00000050323Srsf17887.310ENSHCOG00000018918srsf1a7787.817Hippocampus_comes
ENSRNOG00000050323Srsf19491.213ENSIPUG00000017039srsf1a7993.467Ictalurus_punctatus
ENSRNOG00000050323Srsf110095.968ENSIPUG00000008750srsf1b10095.968Ictalurus_punctatus
ENSRNOG00000050323Srsf1100100.000ENSSTOG00000000243-100100.000Ictidomys_tridecemlineatus
ENSRNOG00000050323Srsf1100100.000ENSJJAG00000000102-100100.000Jaculus_jaculus
ENSRNOG00000050323Srsf15192.126ENSJJAG00000014464-9588.189Jaculus_jaculus
ENSRNOG00000050323Srsf17892.228ENSKMAG00000019232srsf1a7888.601Kryptolebias_marmoratus
ENSRNOG00000050323Srsf17984.500ENSLBEG00000015294-8085.500Labrus_bergylta
ENSRNOG00000050323Srsf17891.192ENSLBEG00000020864-8389.119Labrus_bergylta
ENSRNOG00000050323Srsf17894.845ENSLACG00000014160srsf1a7393.299Latimeria_chalumnae
ENSRNOG00000050323Srsf110097.177ENSLOCG00000005994srsf1a10097.177Lepisosteus_oculatus
ENSRNOG00000050323Srsf1100100.000ENSLAFG00000025743SRSF1100100.000Loxodonta_africana
ENSRNOG00000050323Srsf1100100.000ENSMFAG00000040003-100100.000Macaca_fascicularis
ENSRNOG00000050323Srsf19997.154ENSMMUG00000003260-9797.154Macaca_mulatta
ENSRNOG00000050323Srsf199100.000ENSMMUG00000004725SRSF19998.611Macaca_mulatta
ENSRNOG00000050323Srsf19996.748ENSMNEG00000015983-9796.748Macaca_nemestrina
ENSRNOG00000050323Srsf199100.000ENSMNEG00000027680-9998.611Macaca_nemestrina
ENSRNOG00000050323Srsf1100100.000ENSMLEG00000040509SRSF1100100.000Mandrillus_leucophaeus
ENSRNOG00000050323Srsf19994.309ENSMLEG00000015243-9794.309Mandrillus_leucophaeus
ENSRNOG00000050323Srsf17990.355ENSMAMG00000019687-8087.817Mastacembelus_armatus
ENSRNOG00000050323Srsf17892.228ENSMAMG00000018454-7890.155Mastacembelus_armatus
ENSRNOG00000050323Srsf17994.924ENSMAMG00000019691-8191.878Mastacembelus_armatus
ENSRNOG00000050323Srsf1100100.000ENSMAUG00000021845Srsf1100100.000Mesocricetus_auratus
ENSRNOG00000050323Srsf199100.000ENSMICG00000013639-9998.611Microcebus_murinus
ENSRNOG00000050323Srsf1100100.000ENSMOCG00000001996Srsf1100100.000Microtus_ochrogaster
ENSRNOG00000050323Srsf17890.674ENSMMOG00000014354srsf1a8388.601Mola_mola
ENSRNOG00000050323Srsf17498.919ENSMODG00000014781-6398.919Monodelphis_domestica
ENSRNOG00000050323Srsf17891.710ENSMALG00000017129-7588.601Monopterus_albus
ENSRNOG00000050323Srsf18277.941ENSMALG00000007763-7979.695Monopterus_albus
ENSRNOG00000050323Srsf1100100.000MGP_CAROLIEiJ_G0016943Srsf1100100.000Mus_caroli
ENSRNOG00000050323Srsf1100100.000ENSMUSG00000018379Srsf1100100.000Mus_musculus
ENSRNOG00000050323Srsf1100100.000MGP_PahariEiJ_G0018074Srsf1100100.000Mus_pahari
ENSRNOG00000050323Srsf1100100.000MGP_SPRETEiJ_G0017790Srsf1100100.000Mus_spretus
ENSRNOG00000050323Srsf1100100.000ENSMPUG00000015369SRSF1100100.000Mustela_putorius_furo
ENSRNOG00000050323Srsf1100100.000ENSMLUG00000011040SRSF1100100.000Myotis_lucifugus
ENSRNOG00000050323Srsf18290.640ENSMLUG00000023995-7989.340Myotis_lucifugus
ENSRNOG00000050323Srsf1100100.000ENSNGAG00000011395Srsf1100100.000Nannospalax_galili
ENSRNOG00000050323Srsf110079.839ENSNBRG00000008041srsf1b8082.741Neolamprologus_brichardi
ENSRNOG00000050323Srsf199100.000ENSNLEG00000008088-9998.611Nomascus_leucogenys
ENSRNOG00000050323Srsf15198.425ENSMEUG00000002783-10098.425Notamacropus_eugenii
ENSRNOG00000050323Srsf174100.000ENSOPRG00000001234-100100.000Ochotona_princeps
ENSRNOG00000050323Srsf110099.597ENSODEG00000011481-10099.597Octodon_degus
ENSRNOG00000050323Srsf19690.717ENSONIG00000004860-8190.863Oreochromis_niloticus
ENSRNOG00000050323Srsf17891.710ENSONIG00000013160-7789.637Oreochromis_niloticus
ENSRNOG00000050323Srsf110070.238ENSOCUG00000010894-7771.795Oryctolagus_cuniculus
ENSRNOG00000050323Srsf17892.228ENSORLG00000004580srsf1a7890.155Oryzias_latipes
ENSRNOG00000050323Srsf17892.228ENSORLG00020009456srsf1a8390.155Oryzias_latipes_hni
ENSRNOG00000050323Srsf17892.228ENSORLG00015014384srsf1a8390.155Oryzias_latipes_hsok
ENSRNOG00000050323Srsf17190.341ENSOMEG00000004106srsf1a7188.068Oryzias_melastigma
ENSRNOG00000050323Srsf1100100.000ENSOGAG00000025950-100100.000Otolemur_garnettii
ENSRNOG00000050323Srsf110095.161ENSOARG00000008323SRSF110095.161Ovis_aries
ENSRNOG00000050323Srsf1100100.000ENSPPAG00000043403-100100.000Pan_paniscus
ENSRNOG00000050323Srsf1100100.000ENSPPRG00000004238-100100.000Panthera_pardus
ENSRNOG00000050323Srsf199100.000ENSPTRG00000049077SRSF19998.611Pan_troglodytes
ENSRNOG00000050323Srsf110075.806ENSPANG00000030275-7696.899Papio_anubis
ENSRNOG00000050323Srsf199100.000ENSPANG00000022305-9998.611Papio_anubis
ENSRNOG00000050323Srsf19995.102ENSPKIG00000007204srsf1a9995.102Paramormyrops_kingsleyae
ENSRNOG00000050323Srsf110095.968ENSPKIG00000012857srsf1b10095.968Paramormyrops_kingsleyae
ENSRNOG00000050323Srsf17990.955ENSPSIG00000009000-7897.917Pelodiscus_sinensis
ENSRNOG00000050323Srsf19684.937ENSPMGG00000005467-7884.456Periophthalmus_magnuspinnatus
ENSRNOG00000050323Srsf17889.394ENSPMGG00000013112-7991.414Periophthalmus_magnuspinnatus
ENSRNOG00000050323Srsf1100100.000ENSPEMG00000021416Srsf1100100.000Peromyscus_maniculatus_bairdii
ENSRNOG00000050323Srsf110099.197ENSPCIG00000006076-10099.197Phascolarctos_cinereus
ENSRNOG00000050323Srsf17989.899ENSPFOG00000018325-7089.691Poecilia_formosa
ENSRNOG00000050323Srsf17989.899ENSPLAG00000008416srsf1b7989.691Poecilia_latipinna
ENSRNOG00000050323Srsf17989.899ENSPMEG00000002388-7989.691Poecilia_mexicana
ENSRNOG00000050323Srsf15089.431ENSPMEG00000020607-9887.805Poecilia_mexicana
ENSRNOG00000050323Srsf15089.431ENSPMEG00000014312-9887.805Poecilia_mexicana
ENSRNOG00000050323Srsf17892.228ENSPREG00000009667srsf1a7890.155Poecilia_reticulata
ENSRNOG00000050323Srsf1100100.000ENSPPYG00000008240SRSF1100100.000Pongo_abelii
ENSRNOG00000050323Srsf1100100.000ENSPCAG00000005199SRSF1100100.000Procavia_capensis
ENSRNOG00000050323Srsf18076.733ENSPCOG00000025736-9576.531Propithecus_coquereli
ENSRNOG00000050323Srsf1100100.000ENSPCOG00000023654-100100.000Propithecus_coquereli
ENSRNOG00000050323Srsf175100.000ENSPVAG00000000519-75100.000Pteropus_vampyrus
ENSRNOG00000050323Srsf19493.162ENSPNAG00000022241srsf1a7890.206Pygocentrus_nattereri
ENSRNOG00000050323Srsf110094.355ENSPNAG00000014601srsf1b10094.355Pygocentrus_nattereri
ENSRNOG00000050323Srsf199100.000ENSRBIG00000034445-9998.611Rhinopithecus_bieti
ENSRNOG00000050323Srsf1100100.000ENSRROG00000041506-100100.000Rhinopithecus_roxellana
ENSRNOG00000050323Srsf1100100.000ENSSBOG00000025377-100100.000Saimiri_boliviensis_boliviensis
ENSRNOG00000050323Srsf110099.197ENSSHAG00000002552-10099.197Sarcophilus_harrisii
ENSRNOG00000050323Srsf19996.356ENSSFOG00015004800srsf1a9996.356Scleropages_formosus
ENSRNOG00000050323Srsf19487.083ENSSMAG00000009719-8086.275Scophthalmus_maximus
ENSRNOG00000050323Srsf17890.674ENSSMAG00000007018-7888.083Scophthalmus_maximus
ENSRNOG00000050323Srsf110076.494ENSSDUG00000003929-8484.500Seriola_dumerili
ENSRNOG00000050323Srsf17891.192ENSSDUG00000011303-8389.119Seriola_dumerili
ENSRNOG00000050323Srsf17891.192ENSSLDG00000010543-7889.119Seriola_lalandi_dorsalis
ENSRNOG00000050323Srsf17983.838ENSSLDG00000016868-7883.838Seriola_lalandi_dorsalis
ENSRNOG00000050323Srsf19576.695ENSSLDG00000016895-7883.422Seriola_lalandi_dorsalis
ENSRNOG00000050323Srsf174100.000ENSSARG00000010949-63100.000Sorex_araneus
ENSRNOG00000050323Srsf19998.780ENSSPUG00000000804-9798.780Sphenodon_punctatus
ENSRNOG00000050323Srsf17892.746ENSSPAG00000022562-7890.674Stegastes_partitus
ENSRNOG00000050323Srsf17988.038ENSSPAG00000014152-8187.081Stegastes_partitus
ENSRNOG00000050323Srsf1100100.000ENSSSCG00000017626-100100.000Sus_scrofa
ENSRNOG00000050323Srsf17498.370ENSTGUG00000008416-10098.370Taeniopygia_guttata
ENSRNOG00000050323Srsf17891.192ENSTRUG00000003691srsf1a7889.119Takifugu_rubripes
ENSRNOG00000050323Srsf17891.192ENSTNIG00000016223srsf1a7789.119Tetraodon_nigroviridis
ENSRNOG00000050323Srsf17498.370ENSTBEG00000015378-6398.370Tupaia_belangeri
ENSRNOG00000050323Srsf174100.000ENSTTRG00000007310SRSF1100100.000Tursiops_truncatus
ENSRNOG00000050323Srsf1100100.000ENSUAMG00000009858SRSF1100100.000Ursus_americanus
ENSRNOG00000050323Srsf199100.000ENSUMAG00000000455-97100.000Ursus_maritimus
ENSRNOG00000050323Srsf110099.597ENSVPAG00000010094SRSF110099.597Vicugna_pacos
ENSRNOG00000050323Srsf199100.000ENSVVUG00000011882-97100.000Vulpes_vulpes
ENSRNOG00000050323Srsf110095.968ENSXETG00000008954srsf110091.386Xenopus_tropicalis
ENSRNOG00000050323Srsf17892.228ENSXMAG00000011766srsf1a7890.155Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000380alternative mRNA splicing, via spliceosome23462647.IMPProcess
GO:0000380alternative mRNA splicing, via spliceosome-ISOProcess
GO:0000381regulation of alternative mRNA splicing, via spliceosome21873635.IBAProcess
GO:0000395mRNA 5'-splice site recognition-IEAProcess
GO:0000395mRNA 5'-splice site recognition-ISOProcess
GO:0001701in utero embryonic development-IEAProcess
GO:0001701in utero embryonic development-ISOProcess
GO:0003723RNA binding21873635.IBAFunction
GO:0003723RNA binding-ISOFunction
GO:0003729mRNA binding-IEAFunction
GO:0003729mRNA binding-ISOFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus16288477.IDAComponent
GO:0005634nucleus-ISOComponent
GO:0005654nucleoplasm-ISOComponent
GO:0005737cytoplasm16288477.IDAComponent
GO:0008380RNA splicing-ISOProcess
GO:0016607nuclear speck21873635.IBAComponent
GO:0016607nuclear speck-ISOComponent
GO:0033120positive regulation of RNA splicing16308321.IMPProcess
GO:0035145exon-exon junction complex-IEAComponent
GO:0035145exon-exon junction complex-ISOComponent
GO:0043422protein kinase B binding15684423.IPIFunction
GO:0044547DNA topoisomerase binding-IEAFunction
GO:0044547DNA topoisomerase binding-ISOFunction
GO:0045292mRNA cis splicing, via spliceosome21873635.IBAProcess
GO:0048709oligodendrocyte differentiation16288477.IEPProcess
GO:0050733RS domain binding-IEAFunction
GO:0050733RS domain binding-ISOFunction
GO:0060048cardiac muscle contraction-IEAProcess
GO:0060048cardiac muscle contraction-ISOProcess
GO:0071013catalytic step 2 spliceosome-IEAComponent
GO:0071013catalytic step 2 spliceosome-ISOComponent
GO:0097421liver regeneration23633480.IEPProcess

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