EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000050543 (Gene tree)
Gene ID: 64196
Gene Symbol: Safb
Alias: SAF-B|SAF-B1
Full Name: scaffold attachment factor B
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 20972 bases
Position: chr9:10450205-10471176
Accession: 620613
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000069796	RRM_5	PF13893.6	2.1e-06	1	1
ENSRNOP00000066884	RRM_5	PF13893.6	2.4e-06	1	1
ENSRNOP00000071054	RRM_5	PF13893.6	2.5e-06	1	1
ENSRNOP00000069796	RRM_1	PF00076.22	1.1e-12	1	1
ENSRNOP00000066884	RRM_1	PF00076.22	1.3e-12	1	1
ENSRNOP00000071054	RRM_1	PF00076.22	1.3e-12	1	1
ENSRNOP00000066884	SAP	PF02037.27	8.5e-11	1	1
ENSRNOP00000071054	SAP	PF02037.27	8.7e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000089164	-	3186	XM_017596622	ENSRNOP00000071054	940 (aa)	XP_017452111	A0A0G2JZI0
ENSRNOT00000072868	-	2796	-	ENSRNOP00000066884	931 (aa)	-	M0RBF0
ENSRNOT00000081770	-	2708	-	ENSRNOP00000069796	838 (aa)	-	A0A0G2JW97

Gene Model

Click here to download ENSRNOG00000050543's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000050543's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000050543	Safb	85	65.894	ENSRNOG00000049511	AABR07066522.1	99	66.334

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000050543	Safb	100	84.803	ENSG00000160633	SAFB	100	84.166	Homo_sapiens
ENSRNOG00000050543	Safb	100	83.492	ENSAMEG00000012254	SAFB	100	82.011	Ailuropoda_melanoleuca
ENSRNOG00000050543	Safb	96	40.569	ENSAOCG00000006308	safb	57	57.724	Amphiprion_ocellaris
ENSRNOG00000050543	Safb	91	41.118	ENSAPEG00000023342	safb	64	39.937	Amphiprion_percula
ENSRNOG00000050543	Safb	99	60.094	ENSAPLG00000005780	-	65	56.110	Anas_platyrhynchos
ENSRNOG00000050543	Safb	97	57.725	ENSAPLG00000006355	-	65	55.536	Anas_platyrhynchos
ENSRNOG00000050543	Safb	100	84.199	ENSANAG00000028821	SAFB	100	83.669	Aotus_nancymaae
ENSRNOG00000050543	Safb	71	60.656	ENSACLG00000001926	safb	51	60.163	Astatotilapia_calliptera
ENSRNOG00000050543	Safb	100	80.276	ENSBTAG00000007875	SAFB	100	79.639	Bos_taurus
ENSRNOG00000050543	Safb	81	87.138	ENSCJAG00000017081	SAFB	100	89.610	Callithrix_jacchus
ENSRNOG00000050543	Safb	100	84.910	ENSCAFG00000018803	SAFB	87	84.272	Canis_familiaris
ENSRNOG00000050543	Safb	100	84.910	ENSCAFG00020018943	SAFB	100	84.272	Canis_lupus_dingo
ENSRNOG00000050543	Safb	100	79.745	ENSCHIG00000007262	SAFB	98	81.132	Capra_hircus
ENSRNOG00000050543	Safb	62	75.530	ENSTSYG00000001851	-	97	66.541	Carlito_syrichta
ENSRNOG00000050543	Safb	99	79.348	ENSCAPG00000012121	SAFB	97	80.905	Cavia_aperea
ENSRNOG00000050543	Safb	100	84.810	ENSCPOG00000026322	SAFB	100	84.705	Cavia_porcellus
ENSRNOG00000050543	Safb	100	84.624	ENSCCAG00000020193	SAFB	100	83.987	Cebus_capucinus
ENSRNOG00000050543	Safb	100	84.411	ENSCATG00000029994	SAFB	100	83.881	Cercocebus_atys
ENSRNOG00000050543	Safb	100	84.836	ENSCLAG00000007734	SAFB	100	86.214	Chinchilla_lanigera
ENSRNOG00000050543	Safb	100	84.305	ENSCSAG00000009949	SAFB	100	83.775	Chlorocebus_sabaeus
ENSRNOG00000050543	Safb	87	95.238	ENSCHOG00000003208	SAFB	91	96.000	Choloepus_hoffmanni
ENSRNOG00000050543	Safb	99	56.335	ENSCPBG00000010936	-	63	53.912	Chrysemys_picta_bellii
ENSRNOG00000050543	Safb	99	60.118	ENSCPBG00000010928	-	63	55.735	Chrysemys_picta_bellii
ENSRNOG00000050543	Safb	100	79.596	ENSCANG00000019754	-	100	79.065	Colobus_angolensis_palliatus
ENSRNOG00000050543	Safb	96	92.040	ENSCANG00000004774	-	99	92.040	Colobus_angolensis_palliatus
ENSRNOG00000050543	Safb	100	93.949	ENSCGRG00001002254	Safb	100	93.737	Cricetulus_griseus_chok1gshd
ENSRNOG00000050543	Safb	98	90.035	ENSCGRG00000011529	Safb	96	90.888	Cricetulus_griseus_crigri
ENSRNOG00000050543	Safb	85	48.106	ENSCSEG00000019870	safb	53	53.571	Cynoglossus_semilaevis
ENSRNOG00000050543	Safb	72	50.327	ENSCVAG00000002226	safb	50	56.198	Cyprinodon_variegatus
ENSRNOG00000050543	Safb	96	41.429	ENSDARG00000020467	safb	60	63.333	Danio_rerio
ENSRNOG00000050543	Safb	100	81.992	ENSDNOG00000015746	SAFB	95	79.442	Dasypus_novemcinctus
ENSRNOG00000050543	Safb	100	80.717	ENSDORG00000016200	Safb	100	80.547	Dipodomys_ordii
ENSRNOG00000050543	Safb	79	85.841	ENSETEG00000018679	SAFB	77	85.507	Echinops_telfairi
ENSRNOG00000050543	Safb	100	81.224	ENSEASG00005023019	SAFB	100	81.013	Equus_asinus_asinus
ENSRNOG00000050543	Safb	100	83.758	ENSECAG00000018659	SAFB	89	83.227	Equus_caballus
ENSRNOG00000050543	Safb	97	40.788	ENSELUG00000022327	safb	57	58.871	Esox_lucius
ENSRNOG00000050543	Safb	100	84.820	ENSFCAG00000011835	SAFB	100	84.183	Felis_catus
ENSRNOG00000050543	Safb	100	61.426	ENSFALG00000013882	-	61	57.632	Ficedula_albicollis
ENSRNOG00000050543	Safb	95	55.660	ENSFALG00000013881	-	64	54.344	Ficedula_albicollis
ENSRNOG00000050543	Safb	100	78.000	ENSFDAG00000020306	SAFB	99	84.119	Fukomys_damarensis
ENSRNOG00000050543	Safb	100	60.714	ENSGALG00000013365	-	67	56.406	Gallus_gallus
ENSRNOG00000050543	Safb	96	58.650	ENSGAGG00000008424	-	67	55.832	Gopherus_agassizii
ENSRNOG00000050543	Safb	100	84.411	ENSGGOG00000015109	SAFB	100	83.881	Gorilla_gorilla
ENSRNOG00000050543	Safb	97	37.312	ENSHBUG00000009218	safb	53	50.806	Haplochromis_burtoni
ENSRNOG00000050543	Safb	100	87.234	ENSHGLG00000015883	SAFB	100	87.234	Heterocephalus_glaber_female
ENSRNOG00000050543	Safb	100	91.133	ENSHGLG00100004228	SAFB	98	89.855	Heterocephalus_glaber_male
ENSRNOG00000050543	Safb	98	85.801	ENSSTOG00000002783	SAFB	100	86.545	Ictidomys_tridecemlineatus
ENSRNOG00000050543	Safb	100	86.828	ENSJJAG00000009021	Safb	100	86.934	Jaculus_jaculus
ENSRNOG00000050543	Safb	66	47.132	ENSLACG00000018090	SAFB	66	48.442	Latimeria_chalumnae
ENSRNOG00000050543	Safb	99	82.090	ENSLAFG00000003840	SAFB	100	81.130	Loxodonta_africana
ENSRNOG00000050543	Safb	100	84.411	ENSMFAG00000003885	SAFB	100	83.775	Macaca_fascicularis
ENSRNOG00000050543	Safb	100	84.411	ENSMMUG00000017970	SAFB	100	83.881	Macaca_mulatta
ENSRNOG00000050543	Safb	100	81.124	ENSMNEG00000035637	SAFB	100	80.700	Macaca_nemestrina
ENSRNOG00000050543	Safb	100	79.259	ENSMLEG00000038637	SAFB	100	79.259	Mandrillus_leucophaeus
ENSRNOG00000050543	Safb	71	60.656	ENSMZEG00005009120	safb	51	60.163	Maylandia_zebra
ENSRNOG00000050543	Safb	99	60.165	ENSMGAG00000001101	-	66	54.501	Meleagris_gallopavo
ENSRNOG00000050543	Safb	90	56.410	ENSMGAG00000001051	-	100	57.009	Meleagris_gallopavo
ENSRNOG00000050543	Safb	55	95.680	ENSMAUG00000005013	Safb	100	95.902	Mesocricetus_auratus
ENSRNOG00000050543	Safb	100	81.442	ENSMICG00000008739	-	100	80.170	Microcebus_murinus
ENSRNOG00000050543	Safb	86	71.340	ENSMICG00000046795	-	98	85.106	Microcebus_murinus
ENSRNOG00000050543	Safb	100	93.319	ENSMOCG00000014040	Safb	100	93.213	Microtus_ochrogaster
ENSRNOG00000050543	Safb	100	68.497	ENSMODG00000001236	SAFB	100	68.394	Monodelphis_domestica
ENSRNOG00000050543	Safb	100	97.021	MGP_CAROLIEiJ_G0021780	Safb	100	97.021	Mus_caroli
ENSRNOG00000050543	Safb	100	96.596	ENSMUSG00000071054	Safb	100	96.596	Mus_musculus
ENSRNOG00000050543	Safb	100	97.021	MGP_PahariEiJ_G0020769	Safb	100	97.021	Mus_pahari
ENSRNOG00000050543	Safb	100	84.411	ENSMPUG00000006123	SAFB	94	83.881	Mustela_putorius_furo
ENSRNOG00000050543	Safb	100	83.669	ENSMLUG00000001081	SAFB	100	83.139	Myotis_lucifugus
ENSRNOG00000050543	Safb	100	87.712	ENSNGAG00000019882	Safb	100	87.606	Nannospalax_galili
ENSRNOG00000050543	Safb	97	84.624	ENSNLEG00000013551	SAFB	100	83.960	Nomascus_leucogenys
ENSRNOG00000050543	Safb	96	78.908	ENSOPRG00000011561	-	100	78.828	Ochotona_princeps
ENSRNOG00000050543	Safb	100	86.957	ENSODEG00000014838	SAFB	100	86.850	Octodon_degus
ENSRNOG00000050543	Safb	98	74.668	ENSOCUG00000014628	SAFB	63	76.965	Oryctolagus_cuniculus
ENSRNOG00000050543	Safb	79	48.197	ENSORLG00020000404	safb	51	54.472	Oryzias_latipes_hni
ENSRNOG00000050543	Safb	100	80.423	ENSOGAG00000027769	SAFB	100	79.092	Otolemur_garnettii
ENSRNOG00000050543	Safb	100	76.988	ENSOARG00000007662	-	100	74.443	Ovis_aries
ENSRNOG00000050543	Safb	85	72.331	ENSOARG00000007856	-	79	76.440	Ovis_aries
ENSRNOG00000050543	Safb	100	84.517	ENSPPAG00000035129	SAFB	100	83.881	Pan_paniscus
ENSRNOG00000050543	Safb	100	84.820	ENSPPRG00000017197	SAFB	100	84.183	Panthera_pardus
ENSRNOG00000050543	Safb	100	84.517	ENSPTRG00000010335	SAFB	100	83.881	Pan_troglodytes
ENSRNOG00000050543	Safb	100	84.305	ENSPANG00000007770	SAFB	100	83.669	Papio_anubis
ENSRNOG00000050543	Safb	99	57.965	ENSPSIG00000009367	-	63	55.377	Pelodiscus_sinensis
ENSRNOG00000050543	Safb	100	58.171	ENSPSIG00000011679	-	64	56.271	Pelodiscus_sinensis
ENSRNOG00000050543	Safb	100	93.843	ENSPEMG00000020428	Safb	100	93.631	Peromyscus_maniculatus_bairdii
ENSRNOG00000050543	Safb	62	78.409	ENSPCIG00000009504	-	100	78.269	Phascolarctos_cinereus
ENSRNOG00000050543	Safb	100	85.016	ENSPPYG00000009428	SAFB	100	84.485	Pongo_abelii
ENSRNOG00000050543	Safb	100	78.936	ENSPCAG00000006475	SAFB	100	78.298	Procavia_capensis
ENSRNOG00000050543	Safb	100	77.590	ENSPCOG00000014090	SAFB	100	74.627	Propithecus_coquereli
ENSRNOG00000050543	Safb	100	77.896	ENSPVAG00000004913	SAFB	100	77.258	Pteropus_vampyrus
ENSRNOG00000050543	Safb	96	79.104	ENSRBIG00000042509	SAFB	100	75.177	Rhinopithecus_bieti
ENSRNOG00000050543	Safb	100	84.517	ENSRROG00000029278	SAFB	100	83.881	Rhinopithecus_roxellana
ENSRNOG00000050543	Safb	100	84.624	ENSSBOG00000026291	SAFB	100	84.093	Saimiri_boliviensis_boliviensis
ENSRNOG00000050543	Safb	98	78.329	ENSSARG00000010475	SAFB	100	78.043	Sorex_araneus
ENSRNOG00000050543	Safb	64	49.907	ENSSPUG00000009747	-	67	49.362	Sphenodon_punctatus
ENSRNOG00000050543	Safb	60	48.980	ENSSPUG00000009820	-	64	50.923	Sphenodon_punctatus
ENSRNOG00000050543	Safb	100	83.718	ENSSSCG00000013522	SAFB	99	82.814	Sus_scrofa
ENSRNOG00000050543	Safb	97	60.501	ENSTGUG00000000502	-	67	56.818	Taeniopygia_guttata
ENSRNOG00000050543	Safb	75	87.970	ENSTBEG00000013124	-	74	82.707	Tupaia_belangeri
ENSRNOG00000050543	Safb	92	95.238	ENSTTRG00000013588	SAFB	92	95.238	Tursiops_truncatus
ENSRNOG00000050543	Safb	85	83.731	ENSUAMG00000024543	SAFB	99	83.311	Ursus_americanus
ENSRNOG00000050543	Safb	83	90.071	ENSUMAG00000009734	SAFB	88	90.071	Ursus_maritimus
ENSRNOG00000050543	Safb	75	92.920	ENSVPAG00000012043	SAFB	78	92.562	Vicugna_pacos
ENSRNOG00000050543	Safb	100	84.517	ENSVVUG00000013720	SAFB	87	83.881	Vulpes_vulpes
ENSRNOG00000050543	Safb	68	47.492	ENSXETG00000008755	safb	64	67.045	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	-	IEA	Function
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	-	ISO	Function
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	-	ISS	Function
GO:0003682	chromatin binding	-	IEA	Function
GO:0003682	chromatin binding	-	ISO	Function
GO:0003682	chromatin binding	-	ISS	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005515	protein binding	9671816.10564280.11509566.19282290.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	9671816.	IDA	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0006357	regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0006357	regulation of transcription by RNA polymerase II	9671816.	IDA	Process
GO:0030520	intracellular estrogen receptor signaling pathway	21873635.	IBA	Process
GO:0030520	intracellular estrogen receptor signaling pathway	-	IEA	Process
GO:0030520	intracellular estrogen receptor signaling pathway	-	ISO	Process
GO:0040008	regulation of growth	-	IEA	Process
GO:0040008	regulation of growth	-	ISO	Process
GO:0042445	hormone metabolic process	-	IEA	Process
GO:0042445	hormone metabolic process	-	ISO	Process
GO:0043565	sequence-specific DNA binding	21873635.	IBA	Function
GO:0043565	sequence-specific DNA binding	9671816.	IDA	Function
GO:0045944	positive regulation of transcription by RNA polymerase II	-	IEA	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0050684	regulation of mRNA processing	21873635.	IBA	Process
GO:0050684	regulation of mRNA processing	9671816.	IDA	Process
GO:0050684	regulation of mRNA processing	-	IEA	Process