EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000050563 (Gene tree)
Gene ID
192269
Gene Symbol
Sub1
Alias
Loc192269|MGC109653|PC4|Rpo2tc1|p14
Full Name
SUB1 homolog%2C transcriptional regulator
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Minus strand
Length
12062 bases
Position
chr2:62022567-62034628
Accession
621582
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000067467PC4PF02229.162.5e-2411
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000074446-756XM_006232043ENSRNOP00000067467127 (aa)XP_006232105Q63396
Gene Model
Click here to download ENSRNOG00000050563's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000050563's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000050563Sub110093.701ENSG00000113387SUB110093.701Homo_sapiens
ENSRNOG00000050563Sub110070.079ENSAPOG00000005917SUB110066.142Acanthochromis_polyacanthus
ENSRNOG00000050563Sub110093.701ENSAMEG00000006238SUB19593.701Ailuropoda_melanoleuca
ENSRNOG00000050563Sub110071.654ENSACIG00000015976sub1b10067.717Amphilophus_citrinellus
ENSRNOG00000050563Sub18569.444ENSAOCG00000002323-7572.826Amphiprion_ocellaris
ENSRNOG00000050563Sub19167.241ENSAOCG00000007313-8272.549Amphiprion_ocellaris
ENSRNOG00000050563Sub110072.441ENSAPEG00000024347sub1b10068.504Amphiprion_percula
ENSRNOG00000050563Sub18765.179ENSAPEG00000017151-7172.826Amphiprion_percula
ENSRNOG00000050563Sub15167.692ENSAPEG00000014618-6267.692Amphiprion_percula
ENSRNOG00000050563Sub110072.441ENSATEG00000010340sub1b10068.504Anabas_testudineus
ENSRNOG00000050563Sub110078.358ENSACAG00000007974SUB110078.358Anolis_carolinensis
ENSRNOG00000050563Sub110093.701ENSANAG00000011651-10093.701Aotus_nancymaae
ENSRNOG00000050563Sub110089.764ENSANAG00000023392-8388.976Aotus_nancymaae
ENSRNOG00000050563Sub110073.228ENSACLG00000016875sub1b6469.291Astatotilapia_calliptera
ENSRNOG00000050563Sub110074.803ENSAMXG00000037104sub1b10070.866Astyanax_mexicanus
ENSRNOG00000050563Sub110093.701ENSBTAG00000021965SUB110093.701Bos_taurus
ENSRNOG00000050563Sub18093.137ENSCJAG00000018718SUB19893.137Callithrix_jacchus
ENSRNOG00000050563Sub19191.304ENSCAFG00000024488-8690.741Canis_familiaris
ENSRNOG00000050563Sub110093.701ENSCAFG00000016713-9693.701Canis_familiaris
ENSRNOG00000050563Sub110093.701ENSCAFG00000018879-8893.701Canis_familiaris
ENSRNOG00000050563Sub110091.406ENSCAFG00020011479-7791.406Canis_lupus_dingo
ENSRNOG00000050563Sub110093.701ENSCAFG00020016840-10093.701Canis_lupus_dingo
ENSRNOG00000050563Sub110093.701ENSCHIG00000008460SUB110093.701Capra_hircus
ENSRNOG00000050563Sub110093.701ENSTSYG00000029948-10093.701Carlito_syrichta
ENSRNOG00000050563Sub110086.154ENSTSYG00000014069-9386.154Carlito_syrichta
ENSRNOG00000050563Sub110081.890ENSTSYG00000035366-8381.890Carlito_syrichta
ENSRNOG00000050563Sub110093.701ENSCPOG00000031334SUB110093.701Cavia_porcellus
ENSRNOG00000050563Sub110088.976ENSCCAG00000020604-10088.976Cebus_capucinus
ENSRNOG00000050563Sub110093.701ENSCCAG00000023605-10093.701Cebus_capucinus
ENSRNOG00000050563Sub110089.764ENSCCAG00000033751-9589.764Cebus_capucinus
ENSRNOG00000050563Sub110086.614ENSCCAG00000017043-9386.614Cebus_capucinus
ENSRNOG00000050563Sub110093.701ENSCATG00000031199SUB110093.701Cercocebus_atys
ENSRNOG00000050563Sub110092.969ENSCLAG00000007522SUB110091.406Chinchilla_lanigera
ENSRNOG00000050563Sub110089.764ENSCSAG00000019449-10089.764Chlorocebus_sabaeus
ENSRNOG00000050563Sub110093.701ENSCSAG00000017172-10093.701Chlorocebus_sabaeus
ENSRNOG00000050563Sub110088.189ENSCPBG00000024218SUB17985.827Chrysemys_picta_bellii
ENSRNOG00000050563Sub110093.701ENSCANG00000029372SUB110093.701Colobus_angolensis_palliatus
ENSRNOG00000050563Sub110073.228ENSCANG00000028665-9073.228Colobus_angolensis_palliatus
ENSRNOG00000050563Sub110081.890ENSCGRG00001014660-10081.890Cricetulus_griseus_chok1gshd
ENSRNOG00000050563Sub110099.213ENSCGRG00001003473-10099.213Cricetulus_griseus_chok1gshd
ENSRNOG00000050563Sub110080.315ENSCGRG00001016254-10080.315Cricetulus_griseus_chok1gshd
ENSRNOG00000050563Sub110099.213ENSCGRG00000001133-10099.213Cricetulus_griseus_crigri
ENSRNOG00000050563Sub110083.465ENSCGRG00000001489-10083.465Cricetulus_griseus_crigri
ENSRNOG00000050563Sub110081.890ENSCGRG00000019368-10081.890Cricetulus_griseus_crigri
ENSRNOG00000050563Sub110071.654ENSDARG00000007720sub1b10068.504Danio_rerio
ENSRNOG00000050563Sub19975.397ENSDARG00000053446sub1a10074.016Danio_rerio
ENSRNOG00000050563Sub110090.551ENSDNOG00000032396-10090.551Dasypus_novemcinctus
ENSRNOG00000050563Sub110091.339ENSDNOG00000040794-10091.339Dasypus_novemcinctus
ENSRNOG00000050563Sub110092.913ENSDORG00000013916Sub110092.913Dipodomys_ordii
ENSRNOG00000050563Sub110093.701ENSEASG00005007099SUB110093.701Equus_asinus_asinus
ENSRNOG00000050563Sub110093.701ENSECAG00000012399SUB110093.701Equus_caballus
ENSRNOG00000050563Sub18192.233ENSEEUG00000000436SUB110092.233Erinaceus_europaeus
ENSRNOG00000050563Sub110093.701ENSFCAG00000037288SUB110093.701Felis_catus
ENSRNOG00000050563Sub110087.402ENSFALG00000002143SUB18787.402Ficedula_albicollis
ENSRNOG00000050563Sub110093.701ENSFDAG00000017179SUB110093.701Fukomys_damarensis
ENSRNOG00000050563Sub110051.969ENSGALG00000027147-10052.756Gallus_gallus
ENSRNOG00000050563Sub110087.402ENSGALG00000003248SUB110087.402Gallus_gallus
ENSRNOG00000050563Sub110085.827ENSGALG00000034905-10085.827Gallus_gallus
ENSRNOG00000050563Sub110072.441ENSGACG00000003912sub1b10067.717Gasterosteus_aculeatus
ENSRNOG00000050563Sub110088.189ENSGAGG00000013535SUB110088.189Gopherus_agassizii
ENSRNOG00000050563Sub110093.701ENSGGOG00000040900SUB110093.701Gorilla_gorilla
ENSRNOG00000050563Sub18271.154ENSHBUG00000013953sub1b7771.154Haplochromis_burtoni
ENSRNOG00000050563Sub110093.701ENSHGLG00000006749SUB110093.701Heterocephalus_glaber_female
ENSRNOG00000050563Sub110093.701ENSHGLG00100014344SUB110093.701Heterocephalus_glaber_male
ENSRNOG00000050563Sub110068.504ENSHCOG00000001809sub1b10062.992Hippocampus_comes
ENSRNOG00000050563Sub110070.866ENSIPUG00000008166sub110066.929Ictalurus_punctatus
ENSRNOG00000050563Sub110071.318ENSIPUG00000024367SUB110067.442Ictalurus_punctatus
ENSRNOG00000050563Sub110094.488ENSSTOG00000019364SUB110094.488Ictidomys_tridecemlineatus
ENSRNOG00000050563Sub110088.976ENSJJAG00000018885Sub110088.976Jaculus_jaculus
ENSRNOG00000050563Sub19969.048ENSLBEG00000010728sub1b10066.929Labrus_bergylta
ENSRNOG00000050563Sub15187.692ENSLACG00000001068SUB110087.692Latimeria_chalumnae
ENSRNOG00000050563Sub110077.165ENSLOCG00000006692sub1b10074.016Lepisosteus_oculatus
ENSRNOG00000050563Sub110092.913ENSLAFG00000032088-10092.913Loxodonta_africana
ENSRNOG00000050563Sub110092.913ENSLAFG00000011006-10092.913Loxodonta_africana
ENSRNOG00000050563Sub110085.827ENSMFAG00000045643-6185.827Macaca_fascicularis
ENSRNOG00000050563Sub110093.701ENSMFAG00000040728SUB110093.701Macaca_fascicularis
ENSRNOG00000050563Sub110093.701ENSMMUG00000046181SUB110093.701Macaca_mulatta
ENSRNOG00000050563Sub110093.701ENSMNEG00000037046SUB110093.701Macaca_nemestrina
ENSRNOG00000050563Sub110072.441ENSMLEG00000043436-9072.441Mandrillus_leucophaeus
ENSRNOG00000050563Sub110093.701ENSMLEG00000037017-10093.701Mandrillus_leucophaeus
ENSRNOG00000050563Sub110091.339ENSMLEG00000030509-9491.339Mandrillus_leucophaeus
ENSRNOG00000050563Sub110070.079ENSMAMG00000018428sub1b10066.142Mastacembelus_armatus
ENSRNOG00000050563Sub110071.654ENSMZEG00005021252sub1b10067.717Maylandia_zebra
ENSRNOG00000050563Sub110087.402ENSMGAG00000002906SUB110087.402Meleagris_gallopavo
ENSRNOG00000050563Sub110049.606ENSMGAG00000001200-9549.606Meleagris_gallopavo
ENSRNOG00000050563Sub110099.213ENSMAUG00000020232Sub110099.213Mesocricetus_auratus
ENSRNOG00000050563Sub110093.701ENSMICG00000014535SUB110093.701Microcebus_murinus
ENSRNOG00000050563Sub110098.425ENSMOCG00000018930-10098.425Microtus_ochrogaster
ENSRNOG00000050563Sub110085.039ENSMOCG00000016424-10085.039Microtus_ochrogaster
ENSRNOG00000050563Sub110081.429ENSMODG00000020410SUB110081.429Monodelphis_domestica
ENSRNOG00000050563Sub110071.654ENSMALG00000007163sub1b8173.228Monopterus_albus
ENSRNOG00000050563Sub110099.213MGP_CAROLIEiJ_G0019676Sub110099.213Mus_caroli
ENSRNOG00000050563Sub110098.425ENSMUSG00000022205Sub110098.425Mus_musculus
ENSRNOG00000050563Sub110098.425MGP_PahariEiJ_G0016056Sub110098.425Mus_pahari
ENSRNOG00000050563Sub110098.425MGP_SPRETEiJ_G0020573Sub110098.425Mus_spretus
ENSRNOG00000050563Sub110092.913ENSMPUG00000018418-10092.913Mustela_putorius_furo
ENSRNOG00000050563Sub110093.701ENSMPUG00000015185-10093.701Mustela_putorius_furo
ENSRNOG00000050563Sub110088.976ENSMLUG00000009236-9588.976Myotis_lucifugus
ENSRNOG00000050563Sub110092.913ENSMLUG00000013685-9592.913Myotis_lucifugus
ENSRNOG00000050563Sub110098.425ENSNGAG00000014072-10098.425Nannospalax_galili
ENSRNOG00000050563Sub110086.614ENSNGAG00000017212-10086.614Nannospalax_galili
ENSRNOG00000050563Sub110095.276ENSNGAG00000010782-8495.276Nannospalax_galili
ENSRNOG00000050563Sub18270.192ENSNBRG00000008451sub1b8470.192Neolamprologus_brichardi
ENSRNOG00000050563Sub110088.189ENSNLEG00000035968-10088.189Nomascus_leucogenys
ENSRNOG00000050563Sub110092.913ENSNLEG00000018383-9592.913Nomascus_leucogenys
ENSRNOG00000050563Sub110092.913ENSNLEG00000036068SUB110092.913Nomascus_leucogenys
ENSRNOG00000050563Sub110088.976ENSMEUG00000007770SUB110088.976Notamacropus_eugenii
ENSRNOG00000050563Sub110092.126ENSOPRG00000012887SUB110092.126Ochotona_princeps
ENSRNOG00000050563Sub18589.815ENSODEG00000015114-9890.164Octodon_degus
ENSRNOG00000050563Sub110088.976ENSODEG00000014558-8488.976Octodon_degus
ENSRNOG00000050563Sub110093.701ENSODEG00000001937-10093.701Octodon_degus
ENSRNOG00000050563Sub110089.764ENSOANG00000002328SUB19589.764Ornithorhynchus_anatinus
ENSRNOG00000050563Sub110091.339ENSOCUG00000006262SUB16091.339Oryctolagus_cuniculus
ENSRNOG00000050563Sub19892.742ENSOGAG00000000337-10092.742Otolemur_garnettii
ENSRNOG00000050563Sub110093.701ENSOGAG00000009012-10093.701Otolemur_garnettii
ENSRNOG00000050563Sub110093.701ENSOARG00000012154SUB110093.701Ovis_aries
ENSRNOG00000050563Sub110093.701ENSPPAG00000011212SUB110093.701Pan_paniscus
ENSRNOG00000050563Sub110093.701ENSPPRG00000008557SUB110093.701Panthera_pardus
ENSRNOG00000050563Sub110093.701ENSPTIG00000009466SUB110093.701Panthera_tigris_altaica
ENSRNOG00000050563Sub110093.701ENSPTRG00000048895SUB110093.701Pan_troglodytes
ENSRNOG00000050563Sub110087.402ENSPTRG00000041644-10087.402Pan_troglodytes
ENSRNOG00000050563Sub110087.402ENSPANG00000035601-10087.402Papio_anubis
ENSRNOG00000050563Sub110093.701ENSPANG00000002644-9593.701Papio_anubis
ENSRNOG00000050563Sub110093.701ENSPANG00000000339-9793.701Papio_anubis
ENSRNOG00000050563Sub110072.441ENSPANG00000033272-9072.441Papio_anubis
ENSRNOG00000050563Sub110091.339ENSPANG00000000672-9191.339Papio_anubis
ENSRNOG00000050563Sub110074.803ENSPKIG00000016923sub1b10069.291Paramormyrops_kingsleyae
ENSRNOG00000050563Sub110087.402ENSPSIG00000005731SUB19587.402Pelodiscus_sinensis
ENSRNOG00000050563Sub110078.740ENSPCIG00000020827-10078.740Phascolarctos_cinereus
ENSRNOG00000050563Sub110088.976ENSPCIG00000020907-10088.976Phascolarctos_cinereus
ENSRNOG00000050563Sub110093.701ENSPPYG00000015379SUB110093.701Pongo_abelii
ENSRNOG00000050563Sub110088.189ENSPPYG00000018347-10088.189Pongo_abelii
ENSRNOG00000050563Sub110093.701ENSPCOG00000014391SUB110093.701Propithecus_coquereli
ENSRNOG00000050563Sub110093.701ENSPVAG00000004785SUB110093.701Pteropus_vampyrus
ENSRNOG00000050563Sub110071.654ENSPNYG00000010975sub1b10067.717Pundamilia_nyererei
ENSRNOG00000050563Sub19974.603ENSPNAG00000005998sub1b9970.635Pygocentrus_nattereri
ENSRNOG00000050563Sub110073.228ENSPNAG00000008693sub1a10069.291Pygocentrus_nattereri
ENSRNOG00000050563Sub110087.402ENSRBIG00000031233SUB110087.402Rhinopithecus_bieti
ENSRNOG00000050563Sub110081.102ENSRROG00000042718-9081.102Rhinopithecus_roxellana
ENSRNOG00000050563Sub110093.701ENSRROG00000040438SUB110093.701Rhinopithecus_roxellana
ENSRNOG00000050563Sub110093.701ENSSBOG00000026994SUB110093.701Saimiri_boliviensis_boliviensis
ENSRNOG00000050563Sub110088.976ENSSHAG00000014986SUB110088.976Sarcophilus_harrisii
ENSRNOG00000050563Sub110075.591ENSSFOG00015018386sub1b10075.591Scleropages_formosus
ENSRNOG00000050563Sub110074.016ENSSFOG00015017283sub1b10069.291Scleropages_formosus
ENSRNOG00000050563Sub110073.228ENSSMAG00000000313sub1b10067.717Scophthalmus_maximus
ENSRNOG00000050563Sub110072.441ENSSDUG00000013854sub1b7672.441Seriola_dumerili
ENSRNOG00000050563Sub110072.441ENSSLDG00000000852sub1b10066.929Seriola_lalandi_dorsalis
ENSRNOG00000050563Sub110087.402ENSSPUG00000016817SUB110087.402Sphenodon_punctatus
ENSRNOG00000050563Sub110072.441ENSSPAG00000019363sub1b10066.929Stegastes_partitus
ENSRNOG00000050563Sub110093.701ENSSSCG00000040294-8793.701Sus_scrofa
ENSRNOG00000050563Sub110093.701ENSSSCG00000032650-10093.701Sus_scrofa
ENSRNOG00000050563Sub110085.827ENSTGUG00000001918SUB110085.827Taeniopygia_guttata
ENSRNOG00000050563Sub110069.291ENSTRUG00000024420sub1b10065.354Takifugu_rubripes
ENSRNOG00000050563Sub110065.354ENSTNIG00000002700sub1b10064.567Tetraodon_nigroviridis
ENSRNOG00000050563Sub110088.189ENSTBEG00000001790-10088.189Tupaia_belangeri
ENSRNOG00000050563Sub110092.913ENSTBEG00000006504-10092.913Tupaia_belangeri
ENSRNOG00000050563Sub19984.921ENSTBEG00000015821-10084.921Tupaia_belangeri
ENSRNOG00000050563Sub110087.402ENSTBEG00000011247-9987.402Tupaia_belangeri
ENSRNOG00000050563Sub110092.126ENSTBEG00000004053-10092.126Tupaia_belangeri
ENSRNOG00000050563Sub110088.189ENSTBEG00000012861-10088.189Tupaia_belangeri
ENSRNOG00000050563Sub18193.204ENSTTRG00000017324SUB110093.204Tursiops_truncatus
ENSRNOG00000050563Sub110093.701ENSUAMG00000000182SUB110093.701Ursus_americanus
ENSRNOG00000050563Sub110093.701ENSUMAG00000013792SUB110093.701Ursus_maritimus
ENSRNOG00000050563Sub110085.827ENSVPAG00000011012SUB110085.827Vicugna_pacos
ENSRNOG00000050563Sub110093.701ENSVVUG00000022166-10093.701Vulpes_vulpes
ENSRNOG00000050563Sub18985.841ENSVVUG00000025193-9288.182Vulpes_vulpes
ENSRNOG00000050563Sub110079.070ENSXETG00000027218sub110079.070Xenopus_tropicalis
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0001228DNA-binding transcription activator activity, RNA polymerase II-specific-IEAFunction
GO:0001228DNA-binding transcription activator activity, RNA polymerase II-specific-ISOFunction
GO:0003674molecular_function-NDFunction
GO:0003678DNA helicase activity-IEAFunction
GO:0003697single-stranded DNA binding-IEAFunction
GO:0003697single-stranded DNA binding-ISOFunction
GO:0003713transcription coactivator activity21873635.IBAFunction
GO:0003713transcription coactivator activity-ISOFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus15942958.IDAComponent
GO:0005634nucleus-ISOComponent
GO:0005667transcription factor complex21873635.IBAComponent
GO:0005667transcription factor complex-ISOComponent
GO:0005730nucleolus-IEAComponent
GO:0005730nucleolus-ISOComponent
GO:0006357regulation of transcription by RNA polymerase II-ISOProcess
GO:0008150biological_process-NDProcess
GO:0032508DNA duplex unwinding-IEAProcess
GO:0033613activating transcription factor binding-IEAFunction
GO:0042802identical protein binding-IEAFunction
GO:0042802identical protein binding-ISOFunction
GO:0051260protein homooligomerization-IEAProcess
GO:0060261positive regulation of transcription initiation from RNA polymerase II promoter21873635.IBAProcess
GO:0060395SMAD protein signal transduction-IEAProcess
GO:0060395SMAD protein signal transduction-ISOProcess
GO:1990837sequence-specific double-stranded DNA binding-IEAFunction
GO:1990837sequence-specific double-stranded DNA binding-ISOFunction

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