EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000050655 (Gene tree)
Gene ID: 64475
Gene Symbol: P4ha1
Alias: -
Full Name: prolyl 4-hydroxylase subunit alpha 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 51351 bases
Position: chr20:28920616-28971966
Accession: 621000
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000064405	2OG-FeII_Oxy	PF03171.20	2.3e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000070897	-	2121	XM_006256424	ENSRNOP00000064405	534 (aa)	XP_006256486	P54001

Gene Model

Click here to download ENSRNOG00000050655's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno00330	Arginine and proline metabolism	KEGG
rno01100	Metabolic pathways	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000050655's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000050655	P4ha1	99	63.039	ENSRNOG00000033663	P4ha2	99	63.039

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000050655	P4ha1	100	95.880	ENSG00000122884	P4HA1	100	95.880	Homo_sapiens
ENSRNOG00000050655	P4ha1	97	75.000	ENSAPOG00000005170	p4ha1b	99	73.985	Acanthochromis_polyacanthus
ENSRNOG00000050655	P4ha1	100	93.633	ENSAMEG00000017009	P4HA1	100	93.633	Ailuropoda_melanoleuca
ENSRNOG00000050655	P4ha1	97	73.745	ENSACIG00000007255	p4ha1b	99	73.231	Amphilophus_citrinellus
ENSRNOG00000050655	P4ha1	97	75.665	ENSAOCG00000001647	p4ha1b	98	74.444	Amphiprion_ocellaris
ENSRNOG00000050655	P4ha1	98	63.793	ENSAPEG00000010402	-	96	63.793	Amphiprion_percula
ENSRNOG00000050655	P4ha1	97	75.665	ENSAPEG00000005243	p4ha1b	98	74.444	Amphiprion_percula
ENSRNOG00000050655	P4ha1	97	76.571	ENSATEG00000009272	p4ha1b	98	75.791	Anabas_testudineus
ENSRNOG00000050655	P4ha1	97	86.180	ENSAPLG00000009284	P4HA1	100	86.180	Anas_platyrhynchos
ENSRNOG00000050655	P4ha1	100	83.271	ENSACAG00000000564	P4HA1	99	83.271	Anolis_carolinensis
ENSRNOG00000050655	P4ha1	100	96.067	ENSANAG00000024545	P4HA1	100	97.667	Aotus_nancymaae
ENSRNOG00000050655	P4ha1	97	72.779	ENSACLG00000021556	p4ha1b	99	74.026	Astatotilapia_calliptera
ENSRNOG00000050655	P4ha1	100	73.148	ENSAMXG00000011123	p4ha1b	100	73.063	Astyanax_mexicanus
ENSRNOG00000050655	P4ha1	100	95.131	ENSBTAG00000032996	P4HA1	100	95.131	Bos_taurus
ENSRNOG00000050655	P4ha1	100	95.880	ENSCJAG00000007429	P4HA1	100	95.880	Callithrix_jacchus
ENSRNOG00000050655	P4ha1	100	95.318	ENSCAFG00000014573	P4HA1	100	95.318	Canis_familiaris
ENSRNOG00000050655	P4ha1	99	94.350	ENSCAFG00020023993	P4HA1	97	96.450	Canis_lupus_dingo
ENSRNOG00000050655	P4ha1	100	94.757	ENSCHIG00000013957	P4HA1	100	94.757	Capra_hircus
ENSRNOG00000050655	P4ha1	100	94.569	ENSTSYG00000004004	P4HA1	100	95.902	Carlito_syrichta
ENSRNOG00000050655	P4ha1	100	95.318	ENSCPOG00000015701	P4HA1	100	96.667	Cavia_porcellus
ENSRNOG00000050655	P4ha1	100	95.693	ENSCATG00000029618	P4HA1	100	95.693	Cercocebus_atys
ENSRNOG00000050655	P4ha1	100	95.318	ENSCLAG00000017260	P4HA1	100	97.000	Chinchilla_lanigera
ENSRNOG00000050655	P4ha1	100	95.693	ENSCSAG00000008626	P4HA1	100	95.693	Chlorocebus_sabaeus
ENSRNOG00000050655	P4ha1	99	85.607	ENSCPBG00000007933	P4HA1	99	85.607	Chrysemys_picta_bellii
ENSRNOG00000050655	P4ha1	100	95.880	ENSCANG00000033147	P4HA1	100	97.333	Colobus_angolensis_palliatus
ENSRNOG00000050655	P4ha1	100	96.255	ENSCGRG00001007006	P4ha1	100	96.255	Cricetulus_griseus_chok1gshd
ENSRNOG00000050655	P4ha1	100	96.255	ENSCGRG00000009371	P4ha1	100	96.255	Cricetulus_griseus_crigri
ENSRNOG00000050655	P4ha1	100	73.519	ENSCSEG00000004939	p4ha1b	99	73.519	Cynoglossus_semilaevis
ENSRNOG00000050655	P4ha1	99	72.710	ENSCVAG00000016433	p4ha1b	98	73.645	Cyprinodon_variegatus
ENSRNOG00000050655	P4ha1	97	75.287	ENSDARG00000071082	p4ha1b	100	73.420	Danio_rerio
ENSRNOG00000050655	P4ha1	96	40.194	ENSDARG00000017038	zgc:152670	93	54.274	Danio_rerio
ENSRNOG00000050655	P4ha1	99	92.669	ENSDNOG00000013665	P4HA1	94	92.669	Dasypus_novemcinctus
ENSRNOG00000050655	P4ha1	100	95.318	ENSDORG00000003405	P4ha1	100	95.318	Dipodomys_ordii
ENSRNOG00000050655	P4ha1	99	59.962	ENSEBUG00000005379	p4ha1b	98	59.848	Eptatretus_burgeri
ENSRNOG00000050655	P4ha1	99	93.396	ENSEASG00005016606	P4HA1	100	97.333	Equus_asinus_asinus
ENSRNOG00000050655	P4ha1	99	93.396	ENSECAG00000012496	P4HA1	99	96.457	Equus_caballus
ENSRNOG00000050655	P4ha1	85	88.961	ENSEEUG00000005542	P4HA1	85	88.961	Erinaceus_europaeus
ENSRNOG00000050655	P4ha1	99	71.985	ENSELUG00000005913	p4ha1b	99	74.031	Esox_lucius
ENSRNOG00000050655	P4ha1	100	95.131	ENSFCAG00000018673	P4HA1	100	95.131	Felis_catus
ENSRNOG00000050655	P4ha1	99	85.047	ENSFALG00000012773	P4HA1	99	85.047	Ficedula_albicollis
ENSRNOG00000050655	P4ha1	100	86.592	ENSFDAG00000007094	P4HA1	100	86.592	Fukomys_damarensis
ENSRNOG00000050655	P4ha1	97	73.872	ENSFHEG00000022856	p4ha1b	98	74.033	Fundulus_heteroclitus
ENSRNOG00000050655	P4ha1	95	69.186	ENSGMOG00000018948	p4ha1b	99	69.186	Gadus_morhua
ENSRNOG00000050655	P4ha1	99	85.421	ENSGALG00000004325	P4HA1	100	85.234	Gallus_gallus
ENSRNOG00000050655	P4ha1	97	75.429	ENSGAFG00000019818	p4ha1b	98	74.397	Gambusia_affinis
ENSRNOG00000050655	P4ha1	97	72.296	ENSGACG00000010233	p4ha1b	99	71.190	Gasterosteus_aculeatus
ENSRNOG00000050655	P4ha1	100	95.880	ENSGGOG00000015551	P4HA1	100	95.880	Gorilla_gorilla
ENSRNOG00000050655	P4ha1	97	72.779	ENSHBUG00000015524	p4ha1b	98	72.119	Haplochromis_burtoni
ENSRNOG00000050655	P4ha1	100	95.318	ENSHGLG00000011764	P4HA1	100	97.000	Heterocephalus_glaber_female
ENSRNOG00000050655	P4ha1	95	73.837	ENSHCOG00000017152	p4ha1b	99	74.319	Hippocampus_comes
ENSRNOG00000050655	P4ha1	97	75.290	ENSIPUG00000015157	P4HA1	99	74.480	Ictalurus_punctatus
ENSRNOG00000050655	P4ha1	100	95.506	ENSSTOG00000027062	P4HA1	100	95.506	Ictidomys_tridecemlineatus
ENSRNOG00000050655	P4ha1	100	93.071	ENSJJAG00000004232	P4ha1	100	93.071	Jaculus_jaculus
ENSRNOG00000050655	P4ha1	97	75.189	ENSKMAG00000001588	p4ha1b	99	73.985	Kryptolebias_marmoratus
ENSRNOG00000050655	P4ha1	97	74.952	ENSLBEG00000018911	p4ha1b	98	73.743	Labrus_bergylta
ENSRNOG00000050655	P4ha1	98	80.077	ENSLACG00000010202	P4HA1	99	78.839	Latimeria_chalumnae
ENSRNOG00000050655	P4ha1	99	76.404	ENSLOCG00000008546	p4ha1b	98	76.404	Lepisosteus_oculatus
ENSRNOG00000050655	P4ha1	100	92.884	ENSLAFG00000002652	P4HA1	100	92.884	Loxodonta_africana
ENSRNOG00000050655	P4ha1	100	95.693	ENSMFAG00000030507	P4HA1	100	95.693	Macaca_fascicularis
ENSRNOG00000050655	P4ha1	100	92.322	ENSMMUG00000011274	P4HA1	100	92.322	Macaca_mulatta
ENSRNOG00000050655	P4ha1	99	93.433	ENSMNEG00000011433	P4HA1	98	95.499	Macaca_nemestrina
ENSRNOG00000050655	P4ha1	96	90.411	ENSMLEG00000043338	P4HA1	100	98.770	Mandrillus_leucophaeus
ENSRNOG00000050655	P4ha1	97	74.427	ENSMAMG00000015854	p4ha1b	99	73.519	Mastacembelus_armatus
ENSRNOG00000050655	P4ha1	97	72.779	ENSMZEG00005027421	p4ha1b	98	72.119	Maylandia_zebra
ENSRNOG00000050655	P4ha1	99	85.102	ENSMGAG00000005554	P4HA1	100	86.705	Meleagris_gallopavo
ENSRNOG00000050655	P4ha1	100	79.626	ENSMAUG00000011056	P4ha1	97	89.667	Mesocricetus_auratus
ENSRNOG00000050655	P4ha1	100	95.693	ENSMICG00000031365	P4HA1	100	97.333	Microcebus_murinus
ENSRNOG00000050655	P4ha1	100	97.191	ENSMOCG00000017531	P4ha1	100	98.000	Microtus_ochrogaster
ENSRNOG00000050655	P4ha1	97	74.570	ENSMMOG00000008022	p4ha1b	99	73.371	Mola_mola
ENSRNOG00000050655	P4ha1	100	89.199	ENSMODG00000000121	P4HA1	99	89.199	Monodelphis_domestica
ENSRNOG00000050655	P4ha1	97	73.764	ENSMALG00000019674	p4ha1b	98	72.778	Monopterus_albus
ENSRNOG00000050655	P4ha1	100	98.127	MGP_CAROLIEiJ_G0015342	P4ha1	100	99.667	Mus_caroli
ENSRNOG00000050655	P4ha1	100	98.502	ENSMUSG00000019916	P4ha1	100	99.667	Mus_musculus
ENSRNOG00000050655	P4ha1	100	98.502	MGP_PahariEiJ_G0030758	P4ha1	100	99.667	Mus_pahari
ENSRNOG00000050655	P4ha1	100	98.502	MGP_SPRETEiJ_G0016153	P4ha1	100	99.667	Mus_spretus
ENSRNOG00000050655	P4ha1	100	95.318	ENSMPUG00000003940	P4HA1	100	95.318	Mustela_putorius_furo
ENSRNOG00000050655	P4ha1	100	93.258	ENSMLUG00000006548	P4HA1	100	93.258	Myotis_lucifugus
ENSRNOG00000050655	P4ha1	100	96.816	ENSNGAG00000014487	P4ha1	100	98.667	Nannospalax_galili
ENSRNOG00000050655	P4ha1	97	74.131	ENSNBRG00000014791	p4ha1b	99	73.208	Neolamprologus_brichardi
ENSRNOG00000050655	P4ha1	100	84.270	ENSNLEG00000035416	P4HA1	99	95.851	Nomascus_leucogenys
ENSRNOG00000050655	P4ha1	91	81.762	ENSMEUG00000010326	P4HA1	95	81.762	Notamacropus_eugenii
ENSRNOG00000050655	P4ha1	100	84.270	ENSOPRG00000000990	P4HA1	100	84.270	Ochotona_princeps
ENSRNOG00000050655	P4ha1	100	64.444	ENSODEG00000015164	P4HA1	100	64.444	Octodon_degus
ENSRNOG00000050655	P4ha1	97	73.295	ENSONIG00000000737	p4ha1b	88	72.407	Oreochromis_niloticus
ENSRNOG00000050655	P4ha1	80	91.841	ENSOANG00000001125	-	100	91.841	Ornithorhynchus_anatinus
ENSRNOG00000050655	P4ha1	100	93.071	ENSOCUG00000009739	P4HA1	100	93.071	Oryctolagus_cuniculus
ENSRNOG00000050655	P4ha1	97	74.573	ENSORLG00000005147	p4ha1b	100	74.419	Oryzias_latipes
ENSRNOG00000050655	P4ha1	97	74.573	ENSORLG00020010911	p4ha1b	98	74.170	Oryzias_latipes_hni
ENSRNOG00000050655	P4ha1	90	75.105	ENSORLG00015016175	p4ha1b	98	75.155	Oryzias_latipes_hsok
ENSRNOG00000050655	P4ha1	97	76.046	ENSOMEG00000009962	p4ha1b	99	74.861	Oryzias_melastigma
ENSRNOG00000050655	P4ha1	100	92.724	ENSOGAG00000003483	P4HA1	100	92.724	Otolemur_garnettii
ENSRNOG00000050655	P4ha1	100	94.757	ENSOARG00000007348	P4HA1	100	94.757	Ovis_aries
ENSRNOG00000050655	P4ha1	100	88.725	ENSPPAG00000030135	P4HA1	100	98.770	Pan_paniscus
ENSRNOG00000050655	P4ha1	100	95.131	ENSPPRG00000002655	P4HA1	100	95.131	Panthera_pardus
ENSRNOG00000050655	P4ha1	100	95.131	ENSPTIG00000007711	P4HA1	100	95.131	Panthera_tigris_altaica
ENSRNOG00000050655	P4ha1	100	90.637	ENSPTRG00000002619	P4HA1	100	94.000	Pan_troglodytes
ENSRNOG00000050655	P4ha1	100	95.693	ENSPANG00000022355	P4HA1	100	95.693	Papio_anubis
ENSRNOG00000050655	P4ha1	99	74.532	ENSPKIG00000000438	p4ha1b	99	74.532	Paramormyrops_kingsleyae
ENSRNOG00000050655	P4ha1	99	85.955	ENSPSIG00000016298	P4HA1	100	85.955	Pelodiscus_sinensis
ENSRNOG00000050655	P4ha1	97	74.855	ENSPMGG00000007593	p4ha1b	99	73.308	Periophthalmus_magnuspinnatus
ENSRNOG00000050655	P4ha1	100	96.442	ENSPEMG00000006561	P4ha1	100	96.442	Peromyscus_maniculatus_bairdii
ENSRNOG00000050655	P4ha1	100	89.758	ENSPCIG00000018768	P4HA1	100	89.758	Phascolarctos_cinereus
ENSRNOG00000050655	P4ha1	97	73.143	ENSPFOG00000018574	p4ha1b	98	72.542	Poecilia_formosa
ENSRNOG00000050655	P4ha1	97	74.857	ENSPLAG00000012628	p4ha1b	99	74.919	Poecilia_latipinna
ENSRNOG00000050655	P4ha1	97	74.286	ENSPMEG00000024082	p4ha1b	98	73.655	Poecilia_mexicana
ENSRNOG00000050655	P4ha1	97	75.048	ENSPREG00000010003	p4ha1b	98	74.397	Poecilia_reticulata
ENSRNOG00000050655	P4ha1	100	95.880	ENSPPYG00000002348	P4HA1	100	95.880	Pongo_abelii
ENSRNOG00000050655	P4ha1	95	86.024	ENSPCOG00000017553	P4HA1	100	98.361	Propithecus_coquereli
ENSRNOG00000050655	P4ha1	99	85.094	ENSPVAG00000012989	P4HA1	99	85.094	Pteropus_vampyrus
ENSRNOG00000050655	P4ha1	97	72.968	ENSPNYG00000002443	p4ha1b	98	72.305	Pundamilia_nyererei
ENSRNOG00000050655	P4ha1	99	72.067	ENSPNAG00000023149	p4ha1b	99	72.523	Pygocentrus_nattereri
ENSRNOG00000050655	P4ha1	100	83.146	ENSRBIG00000035304	P4HA1	100	83.146	Rhinopithecus_bieti
ENSRNOG00000050655	P4ha1	100	95.880	ENSRROG00000044078	P4HA1	99	95.880	Rhinopithecus_roxellana
ENSRNOG00000050655	P4ha1	71	89.896	ENSSHAG00000008056	P4HA1	100	88.342	Sarcophilus_harrisii
ENSRNOG00000050655	P4ha1	99	72.761	ENSSFOG00015009176	p4ha1b	100	75.686	Scleropages_formosus
ENSRNOG00000050655	P4ha1	100	73.198	ENSSMAG00000019199	p4ha1b	99	73.198	Scophthalmus_maximus
ENSRNOG00000050655	P4ha1	97	73.485	ENSSDUG00000016587	p4ha1b	98	73.148	Seriola_dumerili
ENSRNOG00000050655	P4ha1	97	74.811	ENSSLDG00000016261	p4ha1b	98	74.444	Seriola_lalandi_dorsalis
ENSRNOG00000050655	P4ha1	100	88.764	ENSSARG00000003275	P4HA1	100	88.764	Sorex_araneus
ENSRNOG00000050655	P4ha1	99	83.895	ENSSPUG00000002624	P4HA1	99	83.895	Sphenodon_punctatus
ENSRNOG00000050655	P4ha1	86	73.418	ENSSPAG00000011193	p4ha1b	100	73.418	Stegastes_partitus
ENSRNOG00000050655	P4ha1	100	94.757	ENSSSCG00000010292	P4HA1	100	94.757	Sus_scrofa
ENSRNOG00000050655	P4ha1	99	84.673	ENSTGUG00000004364	-	99	84.673	Taeniopygia_guttata
ENSRNOG00000050655	P4ha1	99	72.978	ENSTRUG00000004081	p4ha1b	99	73.713	Takifugu_rubripes
ENSRNOG00000050655	P4ha1	99	73.774	ENSTNIG00000017021	p4ha1b	99	73.774	Tetraodon_nigroviridis
ENSRNOG00000050655	P4ha1	100	93.633	ENSTTRG00000009782	P4HA1	100	93.071	Tursiops_truncatus
ENSRNOG00000050655	P4ha1	100	95.506	ENSUMAG00000009024	P4HA1	100	95.506	Ursus_maritimus
ENSRNOG00000050655	P4ha1	100	84.831	ENSVPAG00000007253	P4HA1	100	84.831	Vicugna_pacos
ENSRNOG00000050655	P4ha1	100	95.318	ENSVVUG00000022660	P4HA1	100	95.318	Vulpes_vulpes
ENSRNOG00000050655	P4ha1	99	76.735	ENSXETG00000006154	p4ha1	98	75.235	Xenopus_tropicalis
ENSRNOG00000050655	P4ha1	97	74.194	ENSXCOG00000010262	p4ha1b	99	72.593	Xiphophorus_couchianus
ENSRNOG00000050655	P4ha1	97	74.952	ENSXMAG00000003889	p4ha1b	98	73.929	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0004656	procollagen-proline 4-dioxygenase activity	21873635.	IBA	Function
GO:0004656	procollagen-proline 4-dioxygenase activity	-	ISO	Function
GO:0004656	procollagen-proline 4-dioxygenase activity	-	ISO	Function
GO:0004656	procollagen-proline 4-dioxygenase activity	11997102.	TAS	Function
GO:0005506	iron ion binding	-	IEA	Function
GO:0005739	mitochondrion	-	IEA	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0005783	endoplasmic reticulum	21873635.	IBA	Component
GO:0005783	endoplasmic reticulum	-	ISO	Component
GO:0005788	endoplasmic reticulum lumen	-	IEA	Component
GO:0016222	procollagen-proline 4-dioxygenase complex	-	IEA	Component
GO:0016222	procollagen-proline 4-dioxygenase complex	-	ISO	Component
GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	-	IEA	Function
GO:0018401	peptidyl-proline hydroxylation to 4-hydroxy-L-proline	21873635.	IBA	Process
GO:0018401	peptidyl-proline hydroxylation to 4-hydroxy-L-proline	-	ISO	Process
GO:0018401	peptidyl-proline hydroxylation to 4-hydroxy-L-proline	11997102.	TAS	Process
GO:0030199	collagen fibril organization	-	IEA	Process
GO:0030199	collagen fibril organization	-	ISO	Process
GO:0031418	L-ascorbic acid binding	-	IEA	Function
GO:0042802	identical protein binding	-	IEA	Function
GO:0042802	identical protein binding	-	ISO	Function
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component
GO:0055114	oxidation-reduction process	-	IEA	Process