EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000051498 (Gene tree)
Gene ID: 366276
Gene Symbol: Prpf6
Alias: LOC366276|MGC156816|RGD1307103
Full Name: pre-mRNA processing factor 6
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 64844 bases
Position: chr3:177098073-177162916
Accession: 1307103
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000073536	PRP1_N	PF06424.12	1.7e-57	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000083423	-	3079	-	ENSRNOP00000073536	941 (aa)	-	A1A5S1

Gene Model

Click here to download ENSRNOG00000051498's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000051498's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000051498	Prpf6	100	98.193	ENSG00000101161	PRPF6	100	98.193	Homo_sapiens
ENSRNOG00000051498	Prpf6	100	93.092	ENSAPOG00000010395	prpf6	96	93.518	Acanthochromis_polyacanthus
ENSRNOG00000051498	Prpf6	100	97.346	ENSAMEG00000001916	PRPF6	99	97.346	Ailuropoda_melanoleuca
ENSRNOG00000051498	Prpf6	100	92.774	ENSACIG00000019862	prpf6	96	93.199	Amphilophus_citrinellus
ENSRNOG00000051498	Prpf6	100	92.986	ENSAOCG00000012988	prpf6	96	93.411	Amphiprion_ocellaris
ENSRNOG00000051498	Prpf6	100	86.291	ENSAPEG00000008301	prpf6	100	86.823	Amphiprion_percula
ENSRNOG00000051498	Prpf6	100	92.455	ENSATEG00000005581	prpf6	96	92.880	Anabas_testudineus
ENSRNOG00000051498	Prpf6	100	97.981	ENSACAG00000006464	PRPF6	95	97.981	Anolis_carolinensis
ENSRNOG00000051498	Prpf6	100	98.300	ENSANAG00000012661	PRPF6	100	98.822	Aotus_nancymaae
ENSRNOG00000051498	Prpf6	100	92.667	ENSACLG00000025875	prpf6	96	93.092	Astatotilapia_calliptera
ENSRNOG00000051498	Prpf6	99	93.298	ENSAMXG00000001929	prpf6	96	93.723	Astyanax_mexicanus
ENSRNOG00000051498	Prpf6	100	98.300	ENSBTAG00000011656	PRPF6	100	98.300	Bos_taurus
ENSRNOG00000051498	Prpf6	100	98.300	ENSCJAG00000010616	PRPF6	100	98.300	Callithrix_jacchus
ENSRNOG00000051498	Prpf6	100	98.831	ENSCAFG00000013165	PRPF6	100	98.831	Canis_familiaris
ENSRNOG00000051498	Prpf6	100	98.831	ENSCAFG00020002050	PRPF6	100	98.831	Canis_lupus_dingo
ENSRNOG00000051498	Prpf6	100	98.300	ENSCHIG00000018187	PRPF6	100	98.300	Capra_hircus
ENSRNOG00000051498	Prpf6	100	99.044	ENSTSYG00000007814	PRPF6	100	99.044	Carlito_syrichta
ENSRNOG00000051498	Prpf6	97	98.255	ENSCAPG00000015077	PRPF6	100	98.255	Cavia_aperea
ENSRNOG00000051498	Prpf6	100	99.575	ENSCPOG00000007518	PRPF6	100	99.575	Cavia_porcellus
ENSRNOG00000051498	Prpf6	100	95.112	ENSCCAG00000024564	PRPF6	100	95.112	Cebus_capucinus
ENSRNOG00000051498	Prpf6	100	98.087	ENSCATG00000037473	PRPF6	100	98.087	Cercocebus_atys
ENSRNOG00000051498	Prpf6	100	95.537	ENSCLAG00000003854	PRPF6	100	95.537	Chinchilla_lanigera
ENSRNOG00000051498	Prpf6	100	93.031	ENSCSAG00000016742	PRPF6	100	93.031	Chlorocebus_sabaeus
ENSRNOG00000051498	Prpf6	85	81.138	ENSCHOG00000003315	-	100	81.138	Choloepus_hoffmanni
ENSRNOG00000051498	Prpf6	100	98.087	ENSCPBG00000013964	PRPF6	96	98.087	Chrysemys_picta_bellii
ENSRNOG00000051498	Prpf6	99	73.573	ENSCING00000008817	-	99	73.573	Ciona_intestinalis
ENSRNOG00000051498	Prpf6	100	98.193	ENSCANG00000038230	PRPF6	100	98.193	Colobus_angolensis_palliatus
ENSRNOG00000051498	Prpf6	100	99.787	ENSCGRG00001022666	Prpf6	100	99.787	Cricetulus_griseus_chok1gshd
ENSRNOG00000051498	Prpf6	100	87.248	ENSCSEG00000018561	prpf6	100	87.673	Cynoglossus_semilaevis
ENSRNOG00000051498	Prpf6	100	92.986	ENSCVAG00000010550	prpf6	96	93.411	Cyprinodon_variegatus
ENSRNOG00000051498	Prpf6	100	92.774	ENSDARG00000091367	prpf6	99	93.199	Danio_rerio
ENSRNOG00000051498	Prpf6	100	97.556	ENSDNOG00000040544	PRPF6	100	97.556	Dasypus_novemcinctus
ENSRNOG00000051498	Prpf6	91	98.248	ENSDORG00000005406	Prpf6	100	98.248	Dipodomys_ordii
ENSRNOG00000051498	Prpf6	99	72.013	FBgn0036828	CG6841	98	72.318	Drosophila_melanogaster
ENSRNOG00000051498	Prpf6	85	95.906	ENSETEG00000004447	PRPF6	85	95.906	Echinops_telfairi
ENSRNOG00000051498	Prpf6	99	87.169	ENSEBUG00000008835	prpf6	99	87.169	Eptatretus_burgeri
ENSRNOG00000051498	Prpf6	100	98.406	ENSEASG00005023115	PRPF6	100	98.406	Equus_asinus_asinus
ENSRNOG00000051498	Prpf6	100	94.155	ENSECAG00000013983	PRPF6	100	94.155	Equus_caballus
ENSRNOG00000051498	Prpf6	90	100.000	ENSEEUG00000000180	PRPF6	82	100.000	Erinaceus_europaeus
ENSRNOG00000051498	Prpf6	100	91.498	ENSELUG00000001945	prpf6	93	91.498	Esox_lucius
ENSRNOG00000051498	Prpf6	100	98.406	ENSFCAG00000001183	PRPF6	100	98.406	Felis_catus
ENSRNOG00000051498	Prpf6	100	97.981	ENSFALG00000010326	-	97	97.981	Ficedula_albicollis
ENSRNOG00000051498	Prpf6	100	90.329	ENSFALG00000006046	-	97	90.329	Ficedula_albicollis
ENSRNOG00000051498	Prpf6	100	98.087	ENSFDAG00000006451	PRPF6	100	99.546	Fukomys_damarensis
ENSRNOG00000051498	Prpf6	100	93.624	ENSFHEG00000000560	prpf6	96	93.624	Fundulus_heteroclitus
ENSRNOG00000051498	Prpf6	100	89.429	ENSGMOG00000015622	prpf6	99	89.429	Gadus_morhua
ENSRNOG00000051498	Prpf6	100	98.193	ENSGALG00000006001	PRPF6	100	98.193	Gallus_gallus
ENSRNOG00000051498	Prpf6	100	88.310	ENSGAFG00000021109	prpf6	96	88.735	Gambusia_affinis
ENSRNOG00000051498	Prpf6	100	91.498	ENSGACG00000002576	prpf6	99	91.498	Gasterosteus_aculeatus
ENSRNOG00000051498	Prpf6	100	97.981	ENSGAGG00000008653	PRPF6	96	97.981	Gopherus_agassizii
ENSRNOG00000051498	Prpf6	100	98.193	ENSGGOG00000016876	PRPF6	100	98.193	Gorilla_gorilla
ENSRNOG00000051498	Prpf6	100	92.667	ENSHBUG00000004496	prpf6	96	93.092	Haplochromis_burtoni
ENSRNOG00000051498	Prpf6	100	99.469	ENSHGLG00000009222	PRPF6	100	99.469	Heterocephalus_glaber_female
ENSRNOG00000051498	Prpf6	97	99.455	ENSHGLG00100016600	PRPF6	100	99.455	Heterocephalus_glaber_male
ENSRNOG00000051498	Prpf6	100	91.498	ENSHCOG00000011513	prpf6	96	91.923	Hippocampus_comes
ENSRNOG00000051498	Prpf6	100	93.730	ENSIPUG00000004912	prpf6	96	93.730	Ictalurus_punctatus
ENSRNOG00000051498	Prpf6	100	96.603	ENSSTOG00000002922	PRPF6	100	96.603	Ictidomys_tridecemlineatus
ENSRNOG00000051498	Prpf6	100	99.362	ENSJJAG00000000836	Prpf6	100	99.362	Jaculus_jaculus
ENSRNOG00000051498	Prpf6	100	92.455	ENSKMAG00000017800	prpf6	96	92.880	Kryptolebias_marmoratus
ENSRNOG00000051498	Prpf6	100	92.136	ENSLBEG00000012582	prpf6	96	92.136	Labrus_bergylta
ENSRNOG00000051498	Prpf6	100	94.687	ENSLOCG00000004827	prpf6	96	93.730	Lepisosteus_oculatus
ENSRNOG00000051498	Prpf6	100	97.875	ENSLAFG00000005272	PRPF6	100	97.875	Loxodonta_africana
ENSRNOG00000051498	Prpf6	100	98.193	ENSMFAG00000037542	PRPF6	100	98.193	Macaca_fascicularis
ENSRNOG00000051498	Prpf6	100	91.614	ENSMMUG00000015558	PRPF6	98	99.653	Macaca_mulatta
ENSRNOG00000051498	Prpf6	100	83.792	ENSMNEG00000045555	PRPF6	100	83.792	Macaca_nemestrina
ENSRNOG00000051498	Prpf6	100	92.774	ENSMAMG00000010718	prpf6	96	93.199	Mastacembelus_armatus
ENSRNOG00000051498	Prpf6	94	92.177	ENSMZEG00005026539	prpf6	100	92.630	Maylandia_zebra
ENSRNOG00000051498	Prpf6	100	92.144	ENSMZEG00005015261	-	99	92.569	Maylandia_zebra
ENSRNOG00000051498	Prpf6	97	97.928	ENSMGAG00000006634	PRPF6	100	97.928	Meleagris_gallopavo
ENSRNOG00000051498	Prpf6	100	99.894	ENSMAUG00000013969	Prpf6	100	99.894	Mesocricetus_auratus
ENSRNOG00000051498	Prpf6	87	98.662	ENSMICG00000017793	PRPF6	99	98.662	Microcebus_murinus
ENSRNOG00000051498	Prpf6	100	99.787	ENSMOCG00000001701	Prpf6	100	99.787	Microtus_ochrogaster
ENSRNOG00000051498	Prpf6	100	91.817	ENSMMOG00000020419	prpf6	100	92.242	Mola_mola
ENSRNOG00000051498	Prpf6	99	98.644	ENSMODG00000017051	PRPF6	99	98.644	Monodelphis_domestica
ENSRNOG00000051498	Prpf6	99	92.911	ENSMALG00000000089	prpf6	100	92.911	Monopterus_albus
ENSRNOG00000051498	Prpf6	100	93.092	MGP_CAROLIEiJ_G0024814	Prpf6	100	100.000	Mus_caroli
ENSRNOG00000051498	Prpf6	100	99.787	ENSMUSG00000002455	Prpf6	100	100.000	Mus_musculus
ENSRNOG00000051498	Prpf6	100	99.894	MGP_PahariEiJ_G0026262	Prpf6	100	100.000	Mus_pahari
ENSRNOG00000051498	Prpf6	100	99.787	MGP_SPRETEiJ_G0025741	Prpf6	100	100.000	Mus_spretus
ENSRNOG00000051498	Prpf6	91	97.974	ENSMPUG00000008673	PRPF6	99	97.974	Mustela_putorius_furo
ENSRNOG00000051498	Prpf6	100	99.681	ENSNGAG00000003365	Prpf6	100	99.681	Nannospalax_galili
ENSRNOG00000051498	Prpf6	100	92.774	ENSNBRG00000015025	prpf6	96	93.199	Neolamprologus_brichardi
ENSRNOG00000051498	Prpf6	100	98.300	ENSNLEG00000010208	PRPF6	100	98.300	Nomascus_leucogenys
ENSRNOG00000051498	Prpf6	100	88.353	ENSMEUG00000009824	-	90	88.538	Notamacropus_eugenii
ENSRNOG00000051498	Prpf6	100	93.518	ENSODEG00000004841	PRPF6	100	93.518	Octodon_degus
ENSRNOG00000051498	Prpf6	100	92.667	ENSONIG00000017406	prpf6	96	93.092	Oreochromis_niloticus
ENSRNOG00000051498	Prpf6	100	98.300	ENSOANG00000004920	PRPF6	100	98.300	Ornithorhynchus_anatinus
ENSRNOG00000051498	Prpf6	99	97.103	ENSOCUG00000014151	PRPF6	100	97.103	Oryctolagus_cuniculus
ENSRNOG00000051498	Prpf6	100	92.455	ENSORLG00000009592	prpf6	96	92.455	Oryzias_latipes
ENSRNOG00000051498	Prpf6	100	92.561	ENSORLG00020001458	prpf6	96	92.561	Oryzias_latipes_hni
ENSRNOG00000051498	Prpf6	100	92.561	ENSORLG00015018762	prpf6	96	92.561	Oryzias_latipes_hsok
ENSRNOG00000051498	Prpf6	100	92.455	ENSOMEG00000012174	prpf6	96	92.880	Oryzias_melastigma
ENSRNOG00000051498	Prpf6	100	91.295	ENSOGAG00000007573	PRPF6	100	91.295	Otolemur_garnettii
ENSRNOG00000051498	Prpf6	100	97.875	ENSOARG00000008776	PRPF6	99	97.875	Ovis_aries
ENSRNOG00000051498	Prpf6	100	98.193	ENSPPAG00000008686	PRPF6	100	98.193	Pan_paniscus
ENSRNOG00000051498	Prpf6	100	98.406	ENSPPRG00000008497	PRPF6	100	98.406	Panthera_pardus
ENSRNOG00000051498	Prpf6	97	98.364	ENSPTIG00000011184	PRPF6	97	98.364	Panthera_tigris_altaica
ENSRNOG00000051498	Prpf6	100	98.193	ENSPTRG00000013765	PRPF6	100	98.193	Pan_troglodytes
ENSRNOG00000051498	Prpf6	100	97.662	ENSPANG00000024135	PRPF6	100	97.662	Papio_anubis
ENSRNOG00000051498	Prpf6	100	94.261	ENSPKIG00000005627	prpf6	99	94.687	Paramormyrops_kingsleyae
ENSRNOG00000051498	Prpf6	94	98.186	ENSPSIG00000007717	PRPF6	100	98.186	Pelodiscus_sinensis
ENSRNOG00000051498	Prpf6	100	90.234	ENSPMGG00000008925	prpf6	96	90.446	Periophthalmus_magnuspinnatus
ENSRNOG00000051498	Prpf6	100	99.787	ENSPEMG00000016036	Prpf6	100	99.787	Peromyscus_maniculatus_bairdii
ENSRNOG00000051498	Prpf6	99	88.417	ENSPMAG00000006144	prpf6	99	88.417	Petromyzon_marinus
ENSRNOG00000051498	Prpf6	100	98.406	ENSPCIG00000017909	PRPF6	100	98.406	Phascolarctos_cinereus
ENSRNOG00000051498	Prpf6	100	93.199	ENSPFOG00000006431	prpf6	96	93.624	Poecilia_formosa
ENSRNOG00000051498	Prpf6	100	93.092	ENSPLAG00000005974	prpf6	96	93.518	Poecilia_latipinna
ENSRNOG00000051498	Prpf6	100	93.305	ENSPMEG00000009977	prpf6	96	93.730	Poecilia_mexicana
ENSRNOG00000051498	Prpf6	100	93.199	ENSPREG00000017993	prpf6	92	93.624	Poecilia_reticulata
ENSRNOG00000051498	Prpf6	100	97.662	ENSPPYG00000011256	PRPF6	100	97.662	Pongo_abelii
ENSRNOG00000051498	Prpf6	95	99.673	ENSPCAG00000006536	PRPF6	88	99.673	Procavia_capensis
ENSRNOG00000051498	Prpf6	100	98.406	ENSPCOG00000016881	PRPF6	100	98.406	Propithecus_coquereli
ENSRNOG00000051498	Prpf6	100	92.561	ENSPVAG00000014316	PRPF6	100	92.561	Pteropus_vampyrus
ENSRNOG00000051498	Prpf6	100	76.221	ENSPNYG00000001939	prpf6	96	81.509	Pundamilia_nyererei
ENSRNOG00000051498	Prpf6	100	93.518	ENSPNAG00000015606	prpf6	96	93.943	Pygocentrus_nattereri
ENSRNOG00000051498	Prpf6	100	98.193	ENSRBIG00000043613	PRPF6	100	98.193	Rhinopithecus_bieti
ENSRNOG00000051498	Prpf6	100	95.026	ENSRROG00000040969	PRPF6	98	98.270	Rhinopithecus_roxellana
ENSRNOG00000051498	Prpf6	91	95.398	ENSSBOG00000020632	PRPF6	91	95.398	Saimiri_boliviensis_boliviensis
ENSRNOG00000051498	Prpf6	100	98.406	ENSSHAG00000016810	PRPF6	100	98.406	Sarcophilus_harrisii
ENSRNOG00000051498	Prpf6	99	94.522	ENSSFOG00015020859	prpf6	100	94.952	Scleropages_formosus
ENSRNOG00000051498	Prpf6	100	92.030	ENSSMAG00000008112	prpf6	96	92.030	Scophthalmus_maximus
ENSRNOG00000051498	Prpf6	100	92.667	ENSSDUG00000016142	prpf6	96	93.092	Seriola_dumerili
ENSRNOG00000051498	Prpf6	100	92.667	ENSSLDG00000025283	prpf6	100	89.586	Seriola_lalandi_dorsalis
ENSRNOG00000051498	Prpf6	94	96.939	ENSSPUG00000018260	PRPF6	100	96.939	Sphenodon_punctatus
ENSRNOG00000051498	Prpf6	100	92.667	ENSSPAG00000015850	prpf6	96	93.092	Stegastes_partitus
ENSRNOG00000051498	Prpf6	100	98.300	ENSSSCG00000029119	PRPF6	100	98.186	Sus_scrofa
ENSRNOG00000051498	Prpf6	100	98.087	ENSTGUG00000007221	PRPF6	99	98.087	Taeniopygia_guttata
ENSRNOG00000051498	Prpf6	100	91.605	ENSTRUG00000002920	prpf6	96	92.030	Takifugu_rubripes
ENSRNOG00000051498	Prpf6	100	85.307	ENSTNIG00000017873	prpf6	100	85.729	Tetraodon_nigroviridis
ENSRNOG00000051498	Prpf6	89	98.895	ENSTBEG00000005348	PRPF6	85	98.895	Tupaia_belangeri
ENSRNOG00000051498	Prpf6	100	97.768	ENSTTRG00000013068	PRPF6	100	97.768	Tursiops_truncatus
ENSRNOG00000051498	Prpf6	98	96.848	ENSUMAG00000021631	PRPF6	98	96.848	Ursus_maritimus
ENSRNOG00000051498	Prpf6	100	98.831	ENSVVUG00000014948	PRPF6	100	98.831	Vulpes_vulpes
ENSRNOG00000051498	Prpf6	100	96.387	ENSXETG00000012054	prpf6	97	96.387	Xenopus_tropicalis
ENSRNOG00000051498	Prpf6	100	93.305	ENSXCOG00000008082	prpf6	96	93.730	Xiphophorus_couchianus
ENSRNOG00000051498	Prpf6	100	93.305	ENSXMAG00000015581	prpf6	96	93.730	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000244	spliceosomal tri-snRNP complex assembly	21873635.	IBA	Process
GO:0000244	spliceosomal tri-snRNP complex assembly	-	ISO	Process
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISO	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISS	Process
GO:0003674	molecular_function	-	ND	Function
GO:0003713	transcription coactivator activity	-	IEA	Function
GO:0003713	transcription coactivator activity	-	ISO	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003723	RNA binding	-	ISO	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005682	U5 snRNP	-	IEA	Component
GO:0005682	U5 snRNP	-	ISO	Component
GO:0006403	RNA localization	-	IEA	Process
GO:0006403	RNA localization	-	ISO	Process
GO:0008150	biological_process	-	ND	Process
GO:0016607	nuclear speck	-	ISO	Component
GO:0016607	nuclear speck	-	ISS	Component
GO:0043021	ribonucleoprotein complex binding	-	IEA	Function
GO:0043021	ribonucleoprotein complex binding	-	ISO	Function
GO:0045944	positive regulation of transcription by RNA polymerase II	-	IEA	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0046540	U4/U6 x U5 tri-snRNP complex	21873635.	IBA	Component
GO:0046540	U4/U6 x U5 tri-snRNP complex	-	ISO	Component
GO:0050681	androgen receptor binding	-	IEA	Function
GO:0050681	androgen receptor binding	-	ISO	Function
GO:0071005	U2-type precatalytic spliceosome	-	ISO	Component
GO:0071005	U2-type precatalytic spliceosome	-	ISS	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component
GO:0071013	catalytic step 2 spliceosome	-	ISO	Component