EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000052062 (Gene tree)
Gene ID: 313481
Gene Symbol: Tut4
Alias: LOC313481|Zcchc11
Full Name: terminal uridylyl transferase 4
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 85090 bases
Position: chr5:128083118-128168207
Accession: 1310138
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000070861	zf-CCHC	PF00098.23	3.1e-11	1	2
ENSRNOP00000070861	zf-CCHC	PF00098.23	3.1e-11	2	2
ENSRNOP00000070861	PAP_assoc	PF03828.19	1.2e-28	1	2
ENSRNOP00000070861	PAP_assoc	PF03828.19	1.2e-28	2	2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000079161	-	4374	-	ENSRNOP00000070861	1458 (aa)	-	A0A0G2JZ04

Gene Model

Click here to download ENSRNOG00000052062's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000052062's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000052062	Tut4	50	55.153	ENSRNOG00000016629	Tut7	58	63.095

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000052062	Tut4	100	86.531	ENSG00000134744	TUT4	99	91.667	Homo_sapiens
ENSRNOG00000052062	Tut4	100	86.130	ENSAMEG00000009340	TUT4	93	86.130	Ailuropoda_melanoleuca
ENSRNOG00000052062	Tut4	90	53.853	ENSAOCG00000007862	TUT4	86	53.187	Amphiprion_ocellaris
ENSRNOG00000052062	Tut4	90	54.044	ENSAPEG00000019857	TUT4	98	52.126	Amphiprion_percula
ENSRNOG00000052062	Tut4	73	70.103	ENSATEG00000003823	TUT4	86	70.103	Anabas_testudineus
ENSRNOG00000052062	Tut4	86	67.126	ENSAPLG00000006345	TUT4	86	67.323	Anas_platyrhynchos
ENSRNOG00000052062	Tut4	92	61.983	ENSACAG00000008282	TUT4	91	62.126	Anolis_carolinensis
ENSRNOG00000052062	Tut4	100	77.481	ENSANAG00000013486	TUT4	93	82.185	Aotus_nancymaae
ENSRNOG00000052062	Tut4	75	63.636	ENSACLG00000023312	TUT4	88	63.636	Astatotilapia_calliptera
ENSRNOG00000052062	Tut4	68	66.337	ENSAMXG00000007030	TUT4	88	51.934	Astyanax_mexicanus
ENSRNOG00000052062	Tut4	100	85.117	ENSBTAG00000002721	TUT4	93	85.506	Bos_taurus
ENSRNOG00000052062	Tut4	100	84.884	ENSCJAG00000021588	TUT4	93	86.240	Callithrix_jacchus
ENSRNOG00000052062	Tut4	100	86.240	ENSCAFG00000003734	TUT4	93	86.240	Canis_familiaris
ENSRNOG00000052062	Tut4	100	84.802	ENSCHIG00000023944	TUT4	93	84.802	Capra_hircus
ENSRNOG00000052062	Tut4	100	86.074	ENSTSYG00000009885	TUT4	93	86.364	Carlito_syrichta
ENSRNOG00000052062	Tut4	100	78.466	ENSCAPG00000005680	TUT4	92	79.154	Cavia_aperea
ENSRNOG00000052062	Tut4	100	84.990	ENSCPOG00000005086	TUT4	93	86.550	Cavia_porcellus
ENSRNOG00000052062	Tut4	51	56.250	ENSCCAG00000025142	-	67	62.816	Cebus_capucinus
ENSRNOG00000052062	Tut4	92	89.333	ENSCCAG00000036903	TUT4	93	89.333	Cebus_capucinus
ENSRNOG00000052062	Tut4	100	86.254	ENSCATG00000024618	TUT4	93	86.544	Cercocebus_atys
ENSRNOG00000052062	Tut4	100	87.144	ENSCLAG00000005255	TUT4	93	87.144	Chinchilla_lanigera
ENSRNOG00000052062	Tut4	100	86.544	ENSCSAG00000001277	TUT4	93	86.834	Chlorocebus_sabaeus
ENSRNOG00000052062	Tut4	73	89.333	ENSCHOG00000010995	TUT4	85	89.333	Choloepus_hoffmanni
ENSRNOG00000052062	Tut4	86	70.763	ENSCPBG00000014796	TUT4	86	67.019	Chrysemys_picta_bellii
ENSRNOG00000052062	Tut4	100	85.838	ENSCANG00000036212	TUT4	93	86.127	Colobus_angolensis_palliatus
ENSRNOG00000052062	Tut4	100	93.314	ENSCGRG00001020315	-	100	93.314	Cricetulus_griseus_chok1gshd
ENSRNOG00000052062	Tut4	100	93.019	ENSCGRG00000017571	Tut4	100	93.019	Cricetulus_griseus_crigri
ENSRNOG00000052062	Tut4	68	64.286	ENSCVAG00000012659	TUT4	80	62.185	Cyprinodon_variegatus
ENSRNOG00000052062	Tut4	100	86.240	ENSDNOG00000013920	TUT4	93	86.240	Dasypus_novemcinctus
ENSRNOG00000052062	Tut4	100	86.680	ENSDORG00000027891	Tut4	93	86.680	Dipodomys_ordii
ENSRNOG00000052062	Tut4	79	93.939	ENSETEG00000016298	TUT4	70	93.939	Echinops_telfairi
ENSRNOG00000052062	Tut4	58	50.450	ENSEBUG00000009834	TUT4	77	53.763	Eptatretus_burgeri
ENSRNOG00000052062	Tut4	100	86.173	ENSECAG00000021261	TUT4	100	86.563	Equus_caballus
ENSRNOG00000052062	Tut4	97	82.478	ENSEEUG00000003834	TUT4	91	83.156	Erinaceus_europaeus
ENSRNOG00000052062	Tut4	67	68.817	ENSELUG00000024167	TUT4	78	60.870	Esox_lucius
ENSRNOG00000052062	Tut4	100	85.853	ENSFCAG00000003246	TUT4	93	86.047	Felis_catus
ENSRNOG00000052062	Tut4	85	65.314	ENSFALG00000005607	TUT4	84	65.411	Ficedula_albicollis
ENSRNOG00000052062	Tut4	100	87.220	ENSFDAG00000016676	TUT4	93	87.220	Fukomys_damarensis
ENSRNOG00000052062	Tut4	56	59.029	ENSFHEG00000002296	-	97	58.295	Fundulus_heteroclitus
ENSRNOG00000052062	Tut4	69	59.313	ENSGMOG00000001281	TUT4	97	52.679	Gadus_morhua
ENSRNOG00000052062	Tut4	93	67.127	ENSGALG00000010629	TUT4	92	67.127	Gallus_gallus
ENSRNOG00000052062	Tut4	67	64.646	ENSGACG00000005282	-	90	64.646	Gasterosteus_aculeatus
ENSRNOG00000052062	Tut4	99	69.048	ENSGAGG00000020531	TUT4	99	63.930	Gopherus_agassizii
ENSRNOG00000052062	Tut4	100	87.317	ENSHGLG00000000804	TUT4	93	87.317	Heterocephalus_glaber_female
ENSRNOG00000052062	Tut4	100	87.317	ENSHGLG00100002051	TUT4	93	87.317	Heterocephalus_glaber_male
ENSRNOG00000052062	Tut4	69	65.686	ENSIPUG00000002638	zcchc11	80	65.686	Ictalurus_punctatus
ENSRNOG00000052062	Tut4	100	88.109	ENSSTOG00000015611	TUT4	93	88.109	Ictidomys_tridecemlineatus
ENSRNOG00000052062	Tut4	69	62.727	ENSLBEG00000006518	TUT4	87	52.372	Labrus_bergylta
ENSRNOG00000052062	Tut4	98	59.117	ENSLACG00000010748	TUT4	92	59.309	Latimeria_chalumnae
ENSRNOG00000052062	Tut4	78	71.875	ENSLOCG00000006248	TUT4	85	71.875	Lepisosteus_oculatus
ENSRNOG00000052062	Tut4	98	85.828	ENSLAFG00000003763	TUT4	93	85.828	Loxodonta_africana
ENSRNOG00000052062	Tut4	100	86.544	ENSMFAG00000011842	TUT4	93	86.834	Macaca_fascicularis
ENSRNOG00000052062	Tut4	97	84.467	ENSMMUG00000017023	TUT4	99	77.870	Macaca_mulatta
ENSRNOG00000052062	Tut4	97	85.838	ENSMNEG00000009839	TUT4	92	86.127	Macaca_nemestrina
ENSRNOG00000052062	Tut4	100	86.447	ENSMLEG00000036158	TUT4	93	86.738	Mandrillus_leucophaeus
ENSRNOG00000052062	Tut4	68	61.017	ENSMAMG00000014890	TUT4	80	61.017	Mastacembelus_armatus
ENSRNOG00000052062	Tut4	68	63.636	ENSMZEG00005017227	TUT4	80	63.636	Maylandia_zebra
ENSRNOG00000052062	Tut4	77	67.854	ENSMGAG00000011185	TUT4	92	67.825	Meleagris_gallopavo
ENSRNOG00000052062	Tut4	72	94.349	ENSMAUG00000010283	Tut4	99	94.349	Mesocricetus_auratus
ENSRNOG00000052062	Tut4	99	86.628	ENSMICG00000015853	TUT4	100	86.919	Microcebus_murinus
ENSRNOG00000052062	Tut4	72	92.629	ENSMOCG00000012851	Tut4	100	92.629	Microtus_ochrogaster
ENSRNOG00000052062	Tut4	52	52.749	ENSMMOG00000016870	-	98	58.740	Mola_mola
ENSRNOG00000052062	Tut4	99	68.391	ENSMODG00000000618	TUT4	99	68.702	Monodelphis_domestica
ENSRNOG00000052062	Tut4	100	94.164	MGP_CAROLIEiJ_G0026268	Tut4	100	94.164	Mus_caroli
ENSRNOG00000052062	Tut4	100	93.867	ENSMUSG00000034610	Tut4	100	93.867	Mus_musculus
ENSRNOG00000052062	Tut4	100	94.659	MGP_PahariEiJ_G0028601	Tut4	100	94.659	Mus_pahari
ENSRNOG00000052062	Tut4	100	93.571	MGP_SPRETEiJ_G0027237	Tut4	100	93.571	Mus_spretus
ENSRNOG00000052062	Tut4	100	83.739	ENSMPUG00000006880	TUT4	93	82.571	Mustela_putorius_furo
ENSRNOG00000052062	Tut4	100	85.406	ENSMLUG00000001067	TUT4	93	85.211	Myotis_lucifugus
ENSRNOG00000052062	Tut4	72	87.469	ENSNGAG00000011508	Tut4	100	87.469	Nannospalax_galili
ENSRNOG00000052062	Tut4	100	86.621	ENSNLEG00000017998	TUT4	93	86.914	Nomascus_leucogenys
ENSRNOG00000052062	Tut4	79	63.744	ENSMEUG00000003865	TUT4	77	64.265	Notamacropus_eugenii
ENSRNOG00000052062	Tut4	93	83.400	ENSOPRG00000016362	TUT4	83	84.200	Ochotona_princeps
ENSRNOG00000052062	Tut4	100	85.171	ENSODEG00000007328	TUT4	93	85.171	Octodon_degus
ENSRNOG00000052062	Tut4	71	60.972	ENSONIG00000019455	TUT4	99	53.619	Oreochromis_niloticus
ENSRNOG00000052062	Tut4	84	60.773	ENSOANG00000012864	TUT4	86	61.020	Ornithorhynchus_anatinus
ENSRNOG00000052062	Tut4	100	85.548	ENSOCUG00000002390	TUT4	93	85.756	Oryctolagus_cuniculus
ENSRNOG00000052062	Tut4	100	84.012	ENSOGAG00000005425	TUT4	93	84.302	Otolemur_garnettii
ENSRNOG00000052062	Tut4	100	85.286	ENSOARG00000005494	TUT4	94	85.286	Ovis_aries
ENSRNOG00000052062	Tut4	100	86.031	ENSPPAG00000037653	TUT4	93	86.729	Pan_paniscus
ENSRNOG00000052062	Tut4	100	86.434	ENSPPRG00000020521	TUT4	93	86.628	Panthera_pardus
ENSRNOG00000052062	Tut4	100	86.434	ENSPTIG00000010511	TUT4	93	86.628	Panthera_tigris_altaica
ENSRNOG00000052062	Tut4	100	86.641	ENSPTRG00000000740	TUT4	93	86.931	Pan_troglodytes
ENSRNOG00000052062	Tut4	100	83.911	ENSPANG00000005042	TUT4	93	84.200	Papio_anubis
ENSRNOG00000052062	Tut4	99	67.026	ENSPSIG00000016704	TUT4	95	66.928	Pelodiscus_sinensis
ENSRNOG00000052062	Tut4	72	93.120	ENSPEMG00000023722	Tut4	100	93.120	Peromyscus_maniculatus_bairdii
ENSRNOG00000052062	Tut4	98	67.757	ENSPCIG00000022380	TUT4	92	67.658	Phascolarctos_cinereus
ENSRNOG00000052062	Tut4	78	52.715	ENSPFOG00000002439	TUT4	95	52.731	Poecilia_formosa
ENSRNOG00000052062	Tut4	100	86.965	ENSPPYG00000001347	TUT4	93	87.354	Pongo_abelii
ENSRNOG00000052062	Tut4	74	97.436	ENSPCAG00000013380	TUT4	87	97.436	Procavia_capensis
ENSRNOG00000052062	Tut4	100	81.686	ENSPCOG00000007824	TUT4	100	81.977	Propithecus_coquereli
ENSRNOG00000052062	Tut4	96	93.939	ENSPVAG00000009804	TUT4	87	93.939	Pteropus_vampyrus
ENSRNOG00000052062	Tut4	68	63.636	ENSPNYG00000023175	TUT4	80	63.636	Pundamilia_nyererei
ENSRNOG00000052062	Tut4	67	55.613	ENSPNAG00000022786	TUT4	87	51.509	Pygocentrus_nattereri
ENSRNOG00000052062	Tut4	100	82.672	ENSRBIG00000027989	TUT4	93	82.865	Rhinopithecus_bieti
ENSRNOG00000052062	Tut4	100	86.350	ENSRROG00000034868	TUT4	93	86.544	Rhinopithecus_roxellana
ENSRNOG00000052062	Tut4	100	85.950	ENSSBOG00000013661	TUT4	93	86.143	Saimiri_boliviensis_boliviensis
ENSRNOG00000052062	Tut4	51	54.545	ENSSBOG00000020099	-	71	62.455	Saimiri_boliviensis_boliviensis
ENSRNOG00000052062	Tut4	91	67.026	ENSSHAG00000006231	TUT4	99	67.026	Sarcophilus_harrisii
ENSRNOG00000052062	Tut4	67	69.697	ENSSFOG00015013524	zcchc11	78	69.697	Scleropages_formosus
ENSRNOG00000052062	Tut4	67	67.708	ENSSMAG00000016072	TUT4	86	54.916	Scophthalmus_maximus
ENSRNOG00000052062	Tut4	67	70.652	ENSSLDG00000016071	TUT4	87	53.698	Seriola_lalandi_dorsalis
ENSRNOG00000052062	Tut4	94	74.453	ENSSARG00000009798	TUT4	89	74.453	Sorex_araneus
ENSRNOG00000052062	Tut4	83	61.226	ENSSPUG00000013287	TUT4	84	61.392	Sphenodon_punctatus
ENSRNOG00000052062	Tut4	100	85.078	ENSSSCG00000003859	TUT4	100	81.234	Sus_scrofa
ENSRNOG00000052062	Tut4	86	67.423	ENSTGUG00000009011	TUT4	86	67.423	Taeniopygia_guttata
ENSRNOG00000052062	Tut4	72	100.000	ENSTBEG00000001230	TUT4	71	100.000	Tupaia_belangeri
ENSRNOG00000052062	Tut4	100	85.659	ENSTTRG00000016142	TUT4	93	86.143	Tursiops_truncatus
ENSRNOG00000052062	Tut4	100	86.974	ENSUAMG00000000759	TUT4	100	86.221	Ursus_americanus
ENSRNOG00000052062	Tut4	100	83.527	ENSUMAG00000022669	TUT4	93	82.364	Ursus_maritimus
ENSRNOG00000052062	Tut4	100	82.216	ENSVPAG00000000910	TUT4	93	82.507	Vicugna_pacos
ENSRNOG00000052062	Tut4	100	86.778	ENSVVUG00000002703	TUT4	100	86.270	Vulpes_vulpes
ENSRNOG00000052062	Tut4	80	58.185	ENSXETG00000008061	tut4	98	57.962	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001556	oocyte maturation	-	IEA	Process
GO:0001556	oocyte maturation	-	ISO	Process
GO:0001816	cytokine production	-	IEA	Process
GO:0001816	cytokine production	-	ISO	Process
GO:0003674	molecular_function	-	ND	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0008150	biological_process	-	ND	Process
GO:0008270	zinc ion binding	-	IEA	Function
GO:0010526	negative regulation of transposition, RNA-mediated	-	ISO	Process
GO:0010586	miRNA metabolic process	-	IEA	Process
GO:0010586	miRNA metabolic process	-	ISO	Process
GO:0010587	miRNA catabolic process	-	ISO	Process
GO:0019827	stem cell population maintenance	-	ISO	Process
GO:0031054	pre-miRNA processing	-	ISO	Process
GO:0031123	RNA 3'-end processing	-	ISO	Process
GO:0031664	regulation of lipopolysaccharide-mediated signaling pathway	-	IEA	Process
GO:0031664	regulation of lipopolysaccharide-mediated signaling pathway	-	ISO	Process
GO:0032088	negative regulation of NF-kappaB transcription factor activity	-	IEA	Process
GO:0032088	negative regulation of NF-kappaB transcription factor activity	-	ISO	Process
GO:0032755	positive regulation of interleukin-6 production	-	IEA	Process
GO:0032755	positive regulation of interleukin-6 production	-	ISO	Process
GO:0035198	miRNA binding	-	IEA	Function
GO:0035198	miRNA binding	-	ISO	Function
GO:0036464	cytoplasmic ribonucleoprotein granule	-	ISO	Component
GO:0050265	RNA uridylyltransferase activity	-	IEA	Function
GO:0050265	RNA uridylyltransferase activity	-	ISO	Function
GO:0070102	interleukin-6-mediated signaling pathway	-	IEA	Process
GO:0070102	interleukin-6-mediated signaling pathway	-	ISO	Process
GO:0070569	uridylyltransferase activity	-	ISO	Function
GO:0071044	histone mRNA catabolic process	-	ISO	Process
GO:0071076	RNA 3' uridylation	-	IEA	Process
GO:0071076	RNA 3' uridylation	-	ISO	Process
GO:1990074	polyuridylation-dependent mRNA catabolic process	-	IEA	Process
GO:1990074	polyuridylation-dependent mRNA catabolic process	-	ISO	Process