EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000052406 (Gene tree)
Gene ID: 102552527
Gene Symbol: LOC102552527
Alias: -
Full Name: zinc finger protein 420-like
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 8508 bases
Position: chr1:61268248-61276755
Accession: 7689541
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000072773	zf-C2H2	PF00096.26	5.7e-89	1	15
ENSRNOP00000072773	zf-C2H2	PF00096.26	5.7e-89	2	15
ENSRNOP00000072773	zf-C2H2	PF00096.26	5.7e-89	3	15
ENSRNOP00000072773	zf-C2H2	PF00096.26	5.7e-89	4	15
ENSRNOP00000072773	zf-C2H2	PF00096.26	5.7e-89	5	15
ENSRNOP00000072773	zf-C2H2	PF00096.26	5.7e-89	6	15
ENSRNOP00000072773	zf-C2H2	PF00096.26	5.7e-89	7	15
ENSRNOP00000072773	zf-C2H2	PF00096.26	5.7e-89	8	15
ENSRNOP00000072773	zf-C2H2	PF00096.26	5.7e-89	9	15
ENSRNOP00000072773	zf-C2H2	PF00096.26	5.7e-89	10	15
ENSRNOP00000072773	zf-C2H2	PF00096.26	5.7e-89	11	15
ENSRNOP00000072773	zf-C2H2	PF00096.26	5.7e-89	12	15
ENSRNOP00000072773	zf-C2H2	PF00096.26	5.7e-89	13	15
ENSRNOP00000072773	zf-C2H2	PF00096.26	5.7e-89	14	15
ENSRNOP00000072773	zf-C2H2	PF00096.26	5.7e-89	15	15
ENSRNOP00000072773	zf-met	PF12874.7	2.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000082730	-	1905	XM_006228079	ENSRNOP00000072773	634 (aa)	XP_006228141	A0A0G2K3T8

Gene Model

Click here to download ENSRNOG00000052406's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000052406's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000052406	LOC102552527	74	38.519	ENSRNOG00000047699	Snai2	51	38.519
ENSRNOG00000052406	LOC102552527	81	35.829	ENSRNOG00000008239	Repin1	84	35.829
ENSRNOG00000052406	LOC102552527	79	35.294	ENSRNOG00000014658	Zfp423	98	35.294
ENSRNOG00000052406	LOC102552527	98	42.589	ENSRNOG00000016417	Zfp136	99	43.216
ENSRNOG00000052406	LOC102552527	88	48.187	ENSRNOG00000027923	Mynn	60	45.415
ENSRNOG00000052406	LOC102552527	94	51.628	ENSRNOG00000042777	Zfp28	67	51.628
ENSRNOG00000052406	LOC102552527	99	43.108	ENSRNOG00000006684	Zfp317	92	43.108
ENSRNOG00000052406	LOC102552527	99	53.498	ENSRNOG00000019059	Zfp1	99	53.498
ENSRNOG00000052406	LOC102552527	91	50.402	ENSRNOG00000032625	AC118165.1	100	52.192
ENSRNOG00000052406	LOC102552527	86	40.196	ENSRNOG00000023679	Prdm5	74	36.634
ENSRNOG00000052406	LOC102552527	93	54.464	ENSRNOG00000003455	Zfp13	75	54.464
ENSRNOG00000052406	LOC102552527	95	50.000	ENSRNOG00000061533	AABR07001926.3	99	50.000
ENSRNOG00000052406	LOC102552527	99	41.593	ENSRNOG00000007576	Zfp597	98	41.593
ENSRNOG00000052406	LOC102552527	98	45.395	ENSRNOG00000025937	Zfp26	89	45.395
ENSRNOG00000052406	LOC102552527	82	40.741	ENSRNOG00000028628	LOC100911196	81	31.653
ENSRNOG00000052406	LOC102552527	91	47.312	ENSRNOG00000048394	Zfp560	81	47.312
ENSRNOG00000052406	LOC102552527	99	51.174	ENSRNOG00000049259	LOC102549842	99	51.174
ENSRNOG00000052406	LOC102552527	82	42.274	ENSRNOG00000010436	Zbtb17	61	41.765
ENSRNOG00000052406	LOC102552527	87	40.876	ENSRNOG00000002713	Zfp672	94	40.876
ENSRNOG00000052406	LOC102552527	86	35.000	ENSRNOG00000013460	Zfp319	91	39.295
ENSRNOG00000052406	LOC102552527	84	49.716	ENSRNOG00000014331	Zfp810	85	49.716
ENSRNOG00000052406	LOC102552527	98	56.233	ENSRNOG00000030517	Zfp879	97	56.233
ENSRNOG00000052406	LOC102552527	85	49.010	ENSRNOG00000004735	Gzf1	50	41.993
ENSRNOG00000052406	LOC102552527	99	49.650	ENSRNOG00000030308	Zfp251	95	49.650
ENSRNOG00000052406	LOC102552527	81	33.799	ENSRNOG00000055761	Zfp574	93	35.224
ENSRNOG00000052406	LOC102552527	100	60.061	ENSRNOG00000043341	Zfp51	99	61.611
ENSRNOG00000052406	LOC102552527	75	35.294	ENSRNOG00000016874	Zfp521	90	35.294
ENSRNOG00000052406	LOC102552527	98	44.722	ENSRNOG00000022431	Zfp867	97	44.722
ENSRNOG00000052406	LOC102552527	96	43.321	ENSRNOG00000024056	Zfp17	88	46.575
ENSRNOG00000052406	LOC102552527	86	50.000	ENSRNOG00000029490	Znf768	53	49.643
ENSRNOG00000052406	LOC102552527	89	48.980	ENSRNOG00000014712	Zfp39	67	48.980
ENSRNOG00000052406	LOC102552527	81	33.333	ENSRNOG00000016279	Zfp865	80	33.482
ENSRNOG00000052406	LOC102552527	80	34.974	ENSRNOG00000011137	Zbtb41	59	33.676
ENSRNOG00000052406	LOC102552527	88	50.820	ENSRNOG00000015188	AABR07053681.1	81	50.820
ENSRNOG00000052406	LOC102552527	98	50.196	ENSRNOG00000019416	Zfp61	97	48.718

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000052406	LOC102552527	87	56.184	ENSCING00000003470	-	94	56.184	Ciona_intestinalis
ENSRNOG00000052406	LOC102552527	86	51.777	ENSCING00000018801	zf(c2h2)-138	95	51.777	Ciona_intestinalis
ENSRNOG00000052406	LOC102552527	85	48.746	ENSCSAVG00000010156	-	96	48.746	Ciona_savignyi
ENSRNOG00000052406	LOC102552527	87	58.120	ENSCGRG00001013602	-	97	56.338	Cricetulus_griseus_chok1gshd
ENSRNOG00000052406	LOC102552527	98	55.835	ENSCGRG00001007163	-	100	55.835	Cricetulus_griseus_chok1gshd
ENSRNOG00000052406	LOC102552527	94	55.576	ENSCGRG00001002297	-	99	55.576	Cricetulus_griseus_chok1gshd
ENSRNOG00000052406	LOC102552527	99	61.770	ENSCGRG00000018332	Zfp53	94	61.770	Cricetulus_griseus_crigri
ENSRNOG00000052406	LOC102552527	97	55.835	ENSCGRG00000000778	-	99	52.130	Cricetulus_griseus_crigri
ENSRNOG00000052406	LOC102552527	86	52.941	ENSEBUG00000005655	-	89	50.581	Eptatretus_burgeri
ENSRNOG00000052406	LOC102552527	93	45.526	ENSEBUG00000001525	-	83	45.526	Eptatretus_burgeri
ENSRNOG00000052406	LOC102552527	82	45.588	ENSEBUG00000008792	-	94	45.299	Eptatretus_burgeri
ENSRNOG00000052406	LOC102552527	86	50.877	ENSEBUG00000016878	-	93	50.877	Eptatretus_burgeri
ENSRNOG00000052406	LOC102552527	81	45.374	ENSEBUG00000012454	-	94	45.374	Eptatretus_burgeri
ENSRNOG00000052406	LOC102552527	81	49.512	ENSEBUG00000012823	-	80	49.512	Eptatretus_burgeri
ENSRNOG00000052406	LOC102552527	99	57.050	ENSMAUG00000004844	-	99	59.002	Mesocricetus_auratus
ENSRNOG00000052406	LOC102552527	99	52.538	ENSMAUG00000000939	-	96	52.538	Mesocricetus_auratus
ENSRNOG00000052406	LOC102552527	99	62.218	ENSMAUG00000005974	-	98	60.927	Mesocricetus_auratus
ENSRNOG00000052406	LOC102552527	98	52.705	ENSMOCG00000007851	-	99	49.811	Microtus_ochrogaster
ENSRNOG00000052406	LOC102552527	99	62.000	ENSMOCG00000006946	Zfp53	96	62.000	Microtus_ochrogaster
ENSRNOG00000052406	LOC102552527	99	58.926	MGP_CAROLIEiJ_G0021132	Zfp948	99	58.926	Mus_caroli
ENSRNOG00000052406	LOC102552527	99	91.469	ENSMUSG00000062743	Zfp677	99	91.469	Mus_musculus
ENSRNOG00000052406	LOC102552527	81	42.857	ENSPSIG00000009270	-	80	42.857	Pelodiscus_sinensis
ENSRNOG00000052406	LOC102552527	99	51.852	ENSPEMG00000007241	-	98	51.852	Peromyscus_maniculatus_bairdii
ENSRNOG00000052406	LOC102552527	99	49.088	ENSPEMG00000023883	-	98	49.088	Peromyscus_maniculatus_bairdii

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0046872	metal ion binding	-	IEA	Function