EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000052418 (Gene tree)
Gene ID
298916
Gene Symbol
Cpsf3
Alias
LOC298916|MGC124885
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Plus strand
Length
27921 bases
Position
chr6:43363792-43391712
Accession
1305767
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000071669CPSF73-100_CPF11718.86.1e-5511
ENSRNOP00000071669Beta-CaspPF10996.83.3e-3311
ENSRNOP00000071669Lactamase_BPF00753.271.2e-1811
ENSRNOP00000071669RMMBLPF07521.121.5e-2111
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000091061-2233-ENSRNOP00000071669685 (aa)-G3V6W7
Gene Model
Click here to download ENSRNOG00000052418's gene model file
Pathways
Pathway IDPathway NameSource
rno03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000052418's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSRNOG00000052418Cpsf37137.945ENSRNOG00000019712Ints118237.945
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000052418Cpsf39998.534ENSG00000119203CPSF3100100.000Homo_sapiens
ENSRNOG00000052418Cpsf37396.593ENSAPOG00000012241CPSF38996.593Acanthochromis_polyacanthus
ENSRNOG00000052418Cpsf39985.420ENSAPOG00000022087cpsf39885.420Acanthochromis_polyacanthus
ENSRNOG00000052418Cpsf39998.827ENSAMEG00000008493CPSF39998.827Ailuropoda_melanoleuca
ENSRNOG00000052418Cpsf39285.737ENSACIG00000023663CPSF39985.737Amphilophus_citrinellus
ENSRNOG00000052418Cpsf39182.803ENSACIG00000009846cpsf39982.803Amphilophus_citrinellus
ENSRNOG00000052418Cpsf39987.372ENSAOCG00000010077CPSF39987.372Amphiprion_ocellaris
ENSRNOG00000052418Cpsf39985.420ENSAOCG00000022056cpsf39491.156Amphiprion_ocellaris
ENSRNOG00000052418Cpsf39987.372ENSAPEG00000021167CPSF39987.372Amphiprion_percula
ENSRNOG00000052418Cpsf39985.567ENSAPEG00000019526cpsf39786.728Amphiprion_percula
ENSRNOG00000052418Cpsf39982.966ENSATEG00000014525CPSF39882.966Anabas_testudineus
ENSRNOG00000052418Cpsf39985.147ENSATEG00000003959cpsf39885.147Anabas_testudineus
ENSRNOG00000052418Cpsf39894.478ENSAPLG00000006941CPSF39894.478Anas_platyrhynchos
ENSRNOG00000052418Cpsf39291.956ENSACAG00000001759CPSF39991.956Anolis_carolinensis
ENSRNOG00000052418Cpsf39992.229ENSANAG00000031254CPSF39992.643Aotus_nancymaae
ENSRNOG00000052418Cpsf39285.578ENSACLG00000018846CPSF39985.578Astatotilapia_calliptera
ENSRNOG00000052418Cpsf39785.714ENSACLG00000014484cpsf39985.714Astatotilapia_calliptera
ENSRNOG00000052418Cpsf39987.923ENSAMXG00000004786cpsf39887.923Astyanax_mexicanus
ENSRNOG00000052418Cpsf39998.680ENSBTAG00000019735CPSF39998.680Bos_taurus
ENSRNOG00000052418Cpsf39158.898WBGene00013460cpsf-38958.898Caenorhabditis_elegans
ENSRNOG00000052418Cpsf39998.534ENSCJAG00000006276CPSF39998.534Callithrix_jacchus
ENSRNOG00000052418Cpsf39998.827ENSCAFG00000003375CPSF39598.827Canis_familiaris
ENSRNOG00000052418Cpsf39099.031ENSCAFG00020026799CPSF310099.031Canis_lupus_dingo
ENSRNOG00000052418Cpsf39998.680ENSCHIG00000013973CPSF39998.680Capra_hircus
ENSRNOG00000052418Cpsf39998.534ENSTSYG00000002967CPSF39998.534Carlito_syrichta
ENSRNOG00000052418Cpsf39797.143ENSCAPG00000013851CPSF39997.143Cavia_aperea
ENSRNOG00000052418Cpsf39997.214ENSCPOG00000011299CPSF39997.214Cavia_porcellus
ENSRNOG00000052418Cpsf39998.387ENSCCAG00000036730CPSF39998.387Cebus_capucinus
ENSRNOG00000052418Cpsf39995.900ENSCATG00000014770CPSF39999.139Cercocebus_atys
ENSRNOG00000052418Cpsf39997.067ENSCLAG00000002727CPSF39997.067Chinchilla_lanigera
ENSRNOG00000052418Cpsf39991.056ENSCSAG00000007125CPSF39991.056Chlorocebus_sabaeus
ENSRNOG00000052418Cpsf386100.000ENSCHOG00000000180CPSF38571.479Choloepus_hoffmanni
ENSRNOG00000052418Cpsf39994.860ENSCPBG00000014074CPSF39994.860Chrysemys_picta_bellii
ENSRNOG00000052418Cpsf39967.982ENSCING00000007214-9767.982Ciona_intestinalis
ENSRNOG00000052418Cpsf39985.484ENSCANG00000034435CPSF39985.484Colobus_angolensis_palliatus
ENSRNOG00000052418Cpsf39999.267ENSCGRG00001013134Cpsf39999.267Cricetulus_griseus_chok1gshd
ENSRNOG00000052418Cpsf39999.267ENSCGRG00000018319Cpsf39999.267Cricetulus_griseus_crigri
ENSRNOG00000052418Cpsf39986.618ENSCSEG00000002021CPSF39986.378Cynoglossus_semilaevis
ENSRNOG00000052418Cpsf39987.665ENSCVAG00000015067CPSF39987.665Cyprinodon_variegatus
ENSRNOG00000052418Cpsf39988.660ENSDARG00000027649cpsf39888.660Danio_rerio
ENSRNOG00000052418Cpsf39996.925ENSDNOG00000008940CPSF39596.925Dasypus_novemcinctus
ENSRNOG00000052418Cpsf39598.618ENSDORG00000014263Cpsf310098.618Dipodomys_ordii
ENSRNOG00000052418Cpsf39967.305FBgn0261065Cpsf739867.305Drosophila_melanogaster
ENSRNOG00000052418Cpsf39585.407ENSETEG00000003893CPSF310085.407Echinops_telfairi
ENSRNOG00000052418Cpsf39978.049ENSEBUG00000009018cpsf39878.192Eptatretus_burgeri
ENSRNOG00000052418Cpsf39998.827ENSEASG00005003970CPSF39998.827Equus_asinus_asinus
ENSRNOG00000052418Cpsf39998.827ENSECAG00000019911CPSF39998.827Equus_caballus
ENSRNOG00000052418Cpsf39983.138ENSEEUG00000015422CPSF39983.138Erinaceus_europaeus
ENSRNOG00000052418Cpsf39987.647ENSELUG00000013775cpsf39887.647Esox_lucius
ENSRNOG00000052418Cpsf39998.680ENSFCAG00000007852CPSF39998.680Felis_catus
ENSRNOG00000052418Cpsf39494.729ENSFALG00000006572CPSF39994.729Ficedula_albicollis
ENSRNOG00000052418Cpsf39996.628ENSFDAG00000006317CPSF39996.628Fukomys_damarensis
ENSRNOG00000052418Cpsf35968.127ENSFHEG00000012186CPSF310068.127Fundulus_heteroclitus
ENSRNOG00000052418Cpsf39985.125ENSFHEG00000014774cpsf39885.125Fundulus_heteroclitus
ENSRNOG00000052418Cpsf39986.765ENSGMOG00000003157cpsf39886.765Gadus_morhua
ENSRNOG00000052418Cpsf39994.404ENSGALG00000016424CPSF39993.997Gallus_gallus
ENSRNOG00000052418Cpsf39988.253ENSGAFG00000008016CPSF39988.253Gambusia_affinis
ENSRNOG00000052418Cpsf39183.121ENSGAFG00000019449cpsf39983.121Gambusia_affinis
ENSRNOG00000052418Cpsf36892.505ENSGAGG00000025583CPSF39392.505Gopherus_agassizii
ENSRNOG00000052418Cpsf39996.270ENSGGOG00000001757CPSF39998.578Gorilla_gorilla
ENSRNOG00000052418Cpsf39985.609ENSHBUG00000001188cpsf39985.609Haplochromis_burtoni
ENSRNOG00000052418Cpsf35980.049ENSHBUG00000014332CPSF310080.049Haplochromis_burtoni
ENSRNOG00000052418Cpsf39996.628ENSHGLG00000000666CPSF39996.628Heterocephalus_glaber_female
ENSRNOG00000052418Cpsf39996.628ENSHGLG00100007765CPSF39996.628Heterocephalus_glaber_male
ENSRNOG00000052418Cpsf39986.156ENSHCOG00000015957CPSF39786.156Hippocampus_comes
ENSRNOG00000052418Cpsf39984.875ENSHCOG00000007251cpsf39984.875Hippocampus_comes
ENSRNOG00000052418Cpsf39986.598ENSIPUG00000023488cpsf39886.598Ictalurus_punctatus
ENSRNOG00000052418Cpsf39998.240ENSSTOG00000004476CPSF39998.240Ictidomys_tridecemlineatus
ENSRNOG00000052418Cpsf39998.094ENSJJAG00000023415Cpsf39998.094Jaculus_jaculus
ENSRNOG00000052418Cpsf39984.706ENSKMAG00000002806cpsf39884.706Kryptolebias_marmoratus
ENSRNOG00000052418Cpsf39986.931ENSKMAG00000007317CPSF39986.931Kryptolebias_marmoratus
ENSRNOG00000052418Cpsf35479.893ENSLBEG00000015018-9979.893Labrus_bergylta
ENSRNOG00000052418Cpsf39979.265ENSLBEG00000020569cpsf39479.265Labrus_bergylta
ENSRNOG00000052418Cpsf39588.735ENSLBEG00000013492CPSF39888.735Labrus_bergylta
ENSRNOG00000052418Cpsf39983.554ENSLACG00000008308CPSF39983.554Latimeria_chalumnae
ENSRNOG00000052418Cpsf39988.873ENSLOCG00000016823cpsf39988.873Lepisosteus_oculatus
ENSRNOG00000052418Cpsf39996.755ENSLAFG00000009467CPSF39996.755Loxodonta_africana
ENSRNOG00000052418Cpsf39998.534ENSMFAG00000001339CPSF39998.534Macaca_fascicularis
ENSRNOG00000052418Cpsf39498.450ENSMMUG00000018038CPSF39998.450Macaca_mulatta
ENSRNOG00000052418Cpsf39985.777ENSMNEG00000039447CPSF39985.777Macaca_nemestrina
ENSRNOG00000052418Cpsf39998.680ENSMLEG00000026825CPSF39998.680Mandrillus_leucophaeus
ENSRNOG00000052418Cpsf39284.676ENSMAMG00000008835CPSF39984.676Mastacembelus_armatus
ENSRNOG00000052418Cpsf39985.567ENSMAMG00000003076cpsf39885.567Mastacembelus_armatus
ENSRNOG00000052418Cpsf39985.609ENSMZEG00005014358cpsf39985.609Maylandia_zebra
ENSRNOG00000052418Cpsf39987.812ENSMZEG00005006258CPSF39987.812Maylandia_zebra
ENSRNOG00000052418Cpsf39794.436ENSMGAG00000013995CPSF39994.436Meleagris_gallopavo
ENSRNOG00000052418Cpsf35597.861ENSMAUG00000000166Cpsf39997.861Mesocricetus_auratus
ENSRNOG00000052418Cpsf39992.962ENSMICG00000002363CPSF39992.962Microcebus_murinus
ENSRNOG00000052418Cpsf39994.282ENSMOCG00000020067Cpsf39994.282Microtus_ochrogaster
ENSRNOG00000052418Cpsf37377.857ENSMMOG00000011923CPSF38477.857Mola_mola
ENSRNOG00000052418Cpsf39482.481ENSMMOG00000018212CPSF39882.481Mola_mola
ENSRNOG00000052418Cpsf39995.210ENSMODG00000014703CPSF39995.210Monodelphis_domestica
ENSRNOG00000052418Cpsf39382.839ENSMALG00000011474CPSF310082.839Monopterus_albus
ENSRNOG00000052418Cpsf39986.197ENSMALG00000016416cpsf39986.197Monopterus_albus
ENSRNOG00000052418Cpsf399100.000MGP_CAROLIEiJ_G0017640Cpsf399100.000Mus_caroli
ENSRNOG00000052418Cpsf399100.000ENSMUSG00000054309Cpsf399100.000Mus_musculus
ENSRNOG00000052418Cpsf39999.853MGP_PahariEiJ_G0029397Cpsf39999.853Mus_pahari
ENSRNOG00000052418Cpsf399100.000MGP_SPRETEiJ_G0018481Cpsf399100.000Mus_spretus
ENSRNOG00000052418Cpsf39998.240ENSMPUG00000013213CPSF39998.240Mustela_putorius_furo
ENSRNOG00000052418Cpsf39997.804ENSMLUG00000010636CPSF39997.804Myotis_lucifugus
ENSRNOG00000052418Cpsf39999.120ENSNGAG00000019836Cpsf39999.120Nannospalax_galili
ENSRNOG00000052418Cpsf39285.578ENSNBRG00000010525CPSF39985.578Neolamprologus_brichardi
ENSRNOG00000052418Cpsf39985.169ENSNBRG00000004770cpsf39985.169Neolamprologus_brichardi
ENSRNOG00000052418Cpsf39998.534ENSNLEG00000013359CPSF39998.534Nomascus_leucogenys
ENSRNOG00000052418Cpsf39964.516ENSMEUG00000013117-9964.516Notamacropus_eugenii
ENSRNOG00000052418Cpsf39989.150ENSOPRG00000008902CPSF39989.150Ochotona_princeps
ENSRNOG00000052418Cpsf39996.628ENSODEG00000003129CPSF39996.628Octodon_degus
ENSRNOG00000052418Cpsf39985.756ENSONIG00000018812cpsf39985.756Oreochromis_niloticus
ENSRNOG00000052418Cpsf38295.196ENSOANG00000008577CPSF39995.196Ornithorhynchus_anatinus
ENSRNOG00000052418Cpsf39998.240ENSOCUG00000003728CPSF39998.240Oryctolagus_cuniculus
ENSRNOG00000052418Cpsf39983.700ENSORLG00000018854cpsf39983.700Oryzias_latipes
ENSRNOG00000052418Cpsf39983.554ENSORLG00020013331cpsf39983.554Oryzias_latipes_hni
ENSRNOG00000052418Cpsf39983.700ENSORLG00015011017cpsf39983.700Oryzias_latipes_hsok
ENSRNOG00000052418Cpsf39983.847ENSOMEG00000010647cpsf39483.847Oryzias_melastigma
ENSRNOG00000052418Cpsf39988.563ENSOGAG00000001680CPSF39988.563Otolemur_garnettii
ENSRNOG00000052418Cpsf39998.680ENSOARG00000015073CPSF39998.680Ovis_aries
ENSRNOG00000052418Cpsf39998.680ENSPPAG00000042457CPSF39998.680Pan_paniscus
ENSRNOG00000052418Cpsf39998.387ENSPPRG00000016790CPSF39998.387Panthera_pardus
ENSRNOG00000052418Cpsf39998.378ENSPTIG00000003920CPSF39998.378Panthera_tigris_altaica
ENSRNOG00000052418Cpsf39998.680ENSPTRG00000011638CPSF39998.680Pan_troglodytes
ENSRNOG00000052418Cpsf39998.387ENSPANG00000016798CPSF39998.387Papio_anubis
ENSRNOG00000052418Cpsf39988.856ENSPKIG00000023646cpsf310088.563Paramormyrops_kingsleyae
ENSRNOG00000052418Cpsf39993.392ENSPSIG00000016144CPSF39993.392Pelodiscus_sinensis
ENSRNOG00000052418Cpsf35978.818ENSPMGG00000015311CPSF310078.818Periophthalmus_magnuspinnatus
ENSRNOG00000052418Cpsf38087.138ENSPMGG00000006141-9587.138Periophthalmus_magnuspinnatus
ENSRNOG00000052418Cpsf39998.680ENSPEMG00000017668Cpsf39998.680Peromyscus_maniculatus_bairdii
ENSRNOG00000052418Cpsf37889.944ENSPMAG00000004841cpsf39989.944Petromyzon_marinus
ENSRNOG00000052418Cpsf39796.692ENSPCIG00000009823CPSF39896.779Phascolarctos_cinereus
ENSRNOG00000052418Cpsf39985.022ENSPFOG00000015922cpsf39985.022Poecilia_formosa
ENSRNOG00000052418Cpsf39987.959ENSPFOG00000010418-9987.959Poecilia_formosa
ENSRNOG00000052418Cpsf39985.022ENSPLAG00000000882cpsf39985.022Poecilia_latipinna
ENSRNOG00000052418Cpsf35981.034ENSPLAG00000021300-10081.034Poecilia_latipinna
ENSRNOG00000052418Cpsf39985.169ENSPMEG00000018309cpsf39985.169Poecilia_mexicana
ENSRNOG00000052418Cpsf39982.622ENSPREG00000004482CPSF39882.622Poecilia_reticulata
ENSRNOG00000052418Cpsf39182.962ENSPREG00000014875cpsf39982.962Poecilia_reticulata
ENSRNOG00000052418Cpsf39994.135ENSPPYG00000012666CPSF39994.135Pongo_abelii
ENSRNOG00000052418Cpsf39563.441ENSPCAG00000015042CPSF310063.441Procavia_capensis
ENSRNOG00000052418Cpsf38792.199ENSPCOG00000023016CPSF39792.199Propithecus_coquereli
ENSRNOG00000052418Cpsf39998.974ENSPVAG00000005324CPSF39998.974Pteropus_vampyrus
ENSRNOG00000052418Cpsf37990.792ENSPNYG00000021047CPSF39190.792Pundamilia_nyererei
ENSRNOG00000052418Cpsf39985.609ENSPNYG00000004405cpsf39985.609Pundamilia_nyererei
ENSRNOG00000052418Cpsf39987.482ENSPNAG00000023060cpsf39887.482Pygocentrus_nattereri
ENSRNOG00000052418Cpsf39992.669ENSRBIG00000041615CPSF39993.953Rhinopithecus_bieti
ENSRNOG00000052418Cpsf39998.680ENSRROG00000033792CPSF39998.680Rhinopithecus_roxellana
ENSRNOG00000052418Cpsf39340.537YLR277CYSH19540.537Saccharomyces_cerevisiae
ENSRNOG00000052418Cpsf39992.297ENSSBOG00000027263CPSF39992.297Saimiri_boliviensis_boliviensis
ENSRNOG00000052418Cpsf39996.921ENSSHAG00000007024CPSF39996.921Sarcophilus_harrisii
ENSRNOG00000052418Cpsf39988.873ENSSFOG00015002108cpsf310088.504Scleropages_formosus
ENSRNOG00000052418Cpsf39587.346ENSSMAG00000020534CPSF39587.346Scophthalmus_maximus
ENSRNOG00000052418Cpsf39987.518ENSSDUG00000018498CPSF39987.518Seriola_dumerili
ENSRNOG00000052418Cpsf39985.756ENSSDUG00000002828cpsf39685.756Seriola_dumerili
ENSRNOG00000052418Cpsf39987.518ENSSLDG00000005234CPSF39987.518Seriola_lalandi_dorsalis
ENSRNOG00000052418Cpsf39985.756ENSSLDG00000008469cpsf39190.847Seriola_lalandi_dorsalis
ENSRNOG00000052418Cpsf39980.645ENSSARG00000005186CPSF39980.645Sorex_araneus
ENSRNOG00000052418Cpsf39791.779ENSSPUG00000015525CPSF39791.779Sphenodon_punctatus
ENSRNOG00000052418Cpsf39987.225ENSSPAG00000002906CPSF39987.225Stegastes_partitus
ENSRNOG00000052418Cpsf39985.567ENSSPAG00000018579cpsf39885.567Stegastes_partitus
ENSRNOG00000052418Cpsf39998.680ENSSSCG00000020799CPSF39998.680Sus_scrofa
ENSRNOG00000052418Cpsf39994.845ENSTGUG00000013016CPSF39994.845Taeniopygia_guttata
ENSRNOG00000052418Cpsf35972.087ENSTRUG00000013905CPSF310072.087Takifugu_rubripes
ENSRNOG00000052418Cpsf39985.000ENSTRUG00000007030cpsf39785.000Takifugu_rubripes
ENSRNOG00000052418Cpsf38593.151ENSTBEG00000002707CPSF38493.151Tupaia_belangeri
ENSRNOG00000052418Cpsf38796.196ENSTTRG00000000861CPSF38796.196Tursiops_truncatus
ENSRNOG00000052418Cpsf39995.748ENSUAMG00000007535CPSF39895.748Ursus_americanus
ENSRNOG00000052418Cpsf39498.760ENSUMAG00000003676CPSF39998.760Ursus_maritimus
ENSRNOG00000052418Cpsf39395.110ENSVPAG00000008041CPSF310095.110Vicugna_pacos
ENSRNOG00000052418Cpsf39998.827ENSVVUG00000002194CPSF39998.827Vulpes_vulpes
ENSRNOG00000052418Cpsf39989.574ENSXETG00000008263cpsf39889.574Xenopus_tropicalis
ENSRNOG00000052418Cpsf39985.316ENSXCOG00000019695cpsf39985.316Xiphophorus_couchianus
ENSRNOG00000052418Cpsf35479.893ENSXCOG00000000957-8779.893Xiphophorus_couchianus
ENSRNOG00000052418Cpsf39985.022ENSXMAG00000009784cpsf39985.022Xiphophorus_maculatus
ENSRNOG00000052418Cpsf39988.253ENSXMAG00000027291CPSF39988.253Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003674molecular_function-NDFunction
GO:0003723RNA binding21873635.IBAFunction
GO:0003723RNA binding-ISOFunction
GO:0004521endoribonuclease activity21873635.IBAFunction
GO:0004521endoribonuclease activity-ISOFunction
GO:0005575cellular_component-NDComponent
GO:0005847mRNA cleavage and polyadenylation specificity factor complex21873635.IBAComponent
GO:0005847mRNA cleavage and polyadenylation specificity factor complex-ISOComponent
GO:0006378mRNA polyadenylation21873635.IBAProcess
GO:0006398mRNA 3'-end processing by stem-loop binding and cleavage21873635.IBAProcess
GO:0006398mRNA 3'-end processing by stem-loop binding and cleavage-ISOProcess
GO:0008150biological_process-NDProcess
GO:00084095'-3' exonuclease activity21873635.IBAFunction
GO:00084095'-3' exonuclease activity-ISOFunction
GO:0090502RNA phosphodiester bond hydrolysis, endonucleolytic-IEAProcess

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