EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000052628 (Gene tree)
Gene ID: 100363294
Gene Symbol: LOC100363294
Alias: SLBP2
Full Name: stem-loop binding protein-like
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 3638 bases
Position: chr18:27554062-27557699
Accession: 2323347
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000073645	SLBP_RNA_bind	PF15247.6	3.1e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000088432	-	716	-	ENSRNOP00000073645	169 (aa)	-	A0A0G2K622

Gene Model

Click here to download ENSRNOG00000052628's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000052628's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000052628	LOC100363294	56	56.122	ENSAPEG00000008972	slbp2	75	56.122	Amphiprion_percula
ENSRNOG00000052628	LOC100363294	83	75.714	ENSBTAG00000048053	SLBP2	90	75.714	Bos_taurus
ENSRNOG00000052628	LOC100363294	99	67.665	ENSCAFG00000032438	SLBP2	90	73.188	Canis_familiaris
ENSRNOG00000052628	LOC100363294	99	66.467	ENSCAFG00020010381	-	81	66.467	Canis_lupus_dingo
ENSRNOG00000052628	LOC100363294	83	74.286	ENSCHIG00000015489	-	90	74.286	Capra_hircus
ENSRNOG00000052628	LOC100363294	63	43.519	ENSCPBG00000022068	-	62	43.519	Chrysemys_picta_bellii
ENSRNOG00000052628	LOC100363294	95	72.840	ENSEASG00005020781	-	88	72.840	Equus_asinus_asinus
ENSRNOG00000052628	LOC100363294	95	72.840	ENSECAG00000040006	SLBP2	88	72.840	Equus_caballus
ENSRNOG00000052628	LOC100363294	99	70.238	ENSFCAG00000022610	-	82	70.238	Felis_catus
ENSRNOG00000052628	LOC100363294	74	57.252	ENSGAGG00000024655	-	87	57.252	Gopherus_agassizii
ENSRNOG00000052628	LOC100363294	100	61.988	ENSOARG00000016289	-	85	61.988	Ovis_aries
ENSRNOG00000052628	LOC100363294	99	70.238	ENSPPRG00000024354	-	85	72.222	Panthera_pardus
ENSRNOG00000052628	LOC100363294	99	70.238	ENSPTIG00000005802	-	85	72.222	Panthera_tigris_altaica
ENSRNOG00000052628	LOC100363294	62	53.704	ENSPMGG00000008118	slbp2	66	55.446	Periophthalmus_magnuspinnatus
ENSRNOG00000052628	LOC100363294	68	66.087	ENSPCIG00000015949	-	69	66.142	Phascolarctos_cinereus
ENSRNOG00000052628	LOC100363294	62	53.636	ENSSFOG00015022968	-	74	53.636	Scleropages_formosus
ENSRNOG00000052628	LOC100363294	57	65.979	ENSSPUG00000003262	-	73	58.716	Sphenodon_punctatus
ENSRNOG00000052628	LOC100363294	99	64.881	ENSSSCG00000023691	-	79	64.881	Sus_scrofa
ENSRNOG00000052628	LOC100363294	99	61.714	ENSUAMG00000000146	-	83	67.114	Ursus_americanus
ENSRNOG00000052628	LOC100363294	99	61.143	ENSUMAG00000016224	-	83	66.443	Ursus_maritimus
ENSRNOG00000052628	LOC100363294	95	68.323	ENSVVUG00000018009	-	88	68.323	Vulpes_vulpes
ENSRNOG00000052628	LOC100363294	98	42.077	ENSXETG00000033144	-	75	42.077	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0006398	mRNA 3'-end processing by stem-loop binding and cleavage	21873635.	IBA	Process
GO:0051028	mRNA transport	21873635.	IBA	Process
GO:0071204	histone pre-mRNA 3'end processing complex	21873635.	IBA	Component
GO:0071207	histone pre-mRNA stem-loop binding	21873635.	IBA	Function