EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000053932 (Gene tree)
Gene ID
500988
Gene Symbol
Ddx6
Alias
LOC500988|RGD1564560
Full Name
DEAD-box helicase 6
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Plus strand
Length
32423 bases
Position
chr8:48925604-48958026
Accession
1564560
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000073900DEADPF00270.291.4e-4211
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000077445-2698XM_006242950ENSRNOP00000073900483 (aa)XP_006243012D3ZD73
Gene Model
Click here to download ENSRNOG00000053932's gene model file
Pathways
Pathway IDPathway NameSource
rno03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000053932's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSRNOG00000053932Ddx67731.771ENSRNOG00000050868Ddx435931.771
ENSRNOG00000053932Ddx67430.769ENSRNOG00000004670Ddx567330.273
ENSRNOG00000053932Ddx68030.513ENSRNOG00000042451Ddx596230.513
ENSRNOG00000053932Ddx68432.854ENSRNOG00000015274Ddx205032.854
ENSRNOG00000053932Ddx67133.056ENSRNOG00000026686Ddx45033.056
ENSRNOG00000053932Ddx66830.678ENSRNOG00000030680Ddx55530.678
ENSRNOG00000053932Ddx67833.247ENSRNOG00000007838Ddx478433.247
ENSRNOG00000053932Ddx67430.894ENSRNOG00000051170Ddx175830.971
ENSRNOG00000053932Ddx67638.710ENSRNOG00000030628Eif4a19138.710
ENSRNOG00000053932Ddx67638.441ENSRNOG00000001815Eif4a29138.441
ENSRNOG00000053932Ddx66832.479ENSRNOG00000001043Ddx555832.479
ENSRNOG00000053932Ddx66931.755ENSRNOG00000023383Ddx3x5431.844
ENSRNOG00000053932Ddx67434.324ENSRNOG00000012260Ddx257835.079
ENSRNOG00000053932Ddx67631.915ENSRNOG00000002612Ddx526331.915
ENSRNOG00000053932Ddx67935.659ENSRNOG00000000841Ddx39b9037.017
ENSRNOG00000053932Ddx67837.831ENSRNOG00000045791Eif4a39137.831
ENSRNOG00000053932Ddx67132.303ENSRNOG00000012771Ddx415732.303
ENSRNOG00000053932Ddx67935.025ENSRNOG00000018033Ddx19a7935.526
ENSRNOG00000053932Ddx67533.062ENSRNOG00000022368Ddx497733.062
ENSRNOG00000053932Ddx68234.750ENSRNOG00000004373Ddx39a9334.750
ENSRNOG00000053932Ddx66932.402ENSRNOG00000002501Ddx3y5432.402
ENSRNOG00000053932Ddx67731.159ENSRNOG00000060154Ddx235131.175
ENSRNOG00000053932Ddx67630.534ENSRNOG00000057231Ddx36030.534
ENSRNOG00000053932Ddx66340.678ENSRNOG00000006652Ddx15340.678
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000053932Ddx610098.137ENSG00000110367DDX610098.137Homo_sapiens
ENSRNOG00000053932Ddx610089.050ENSAPOG00000007695ddx610089.256Acanthochromis_polyacanthus
ENSRNOG00000053932Ddx610098.344ENSAMEG00000006073DDX610098.344Ailuropoda_melanoleuca
ENSRNOG00000053932Ddx610075.413ENSACIG00000023989ddx610075.413Amphilophus_citrinellus
ENSRNOG00000053932Ddx610089.050ENSAOCG00000022849ddx610089.256Amphiprion_ocellaris
ENSRNOG00000053932Ddx610089.050ENSAPEG00000013047ddx610089.256Amphiprion_percula
ENSRNOG00000053932Ddx610089.441ENSATEG00000009693ddx610089.441Anabas_testudineus
ENSRNOG00000053932Ddx69997.925ENSAPLG00000007274DDX69997.925Anas_platyrhynchos
ENSRNOG00000053932Ddx69995.652ENSACAG00000017134DDX69995.859Anolis_carolinensis
ENSRNOG00000053932Ddx610093.004ENSANAG00000038280-10093.004Aotus_nancymaae
ENSRNOG00000053932Ddx610068.944ENSANAG00000032103-9084.737Aotus_nancymaae
ENSRNOG00000053932Ddx610089.441ENSACLG00000022164ddx610089.441Astatotilapia_calliptera
ENSRNOG00000053932Ddx69989.027ENSAMXG00000019553ddx69989.234Astyanax_mexicanus
ENSRNOG00000053932Ddx69998.340ENSBTAG00000009067DDX69998.340Bos_taurus
ENSRNOG00000053932Ddx610098.344ENSCJAG00000013591DDX610098.344Callithrix_jacchus
ENSRNOG00000053932Ddx610098.344ENSCAFG00000012442DDX610098.344Canis_familiaris
ENSRNOG00000053932Ddx610098.344ENSCAFG00020013150DDX610098.344Canis_lupus_dingo
ENSRNOG00000053932Ddx69998.133ENSCHIG00000026114DDX69998.133Capra_hircus
ENSRNOG00000053932Ddx610098.344ENSTSYG00000026313DDX610098.344Carlito_syrichta
ENSRNOG00000053932Ddx68163.951ENSCAPG00000013040DDX610063.951Cavia_aperea
ENSRNOG00000053932Ddx610091.925ENSCPOG00000010587Ddx610091.925Cavia_porcellus
ENSRNOG00000053932Ddx610094.203ENSCCAG00000021636-10094.203Cebus_capucinus
ENSRNOG00000053932Ddx610098.137ENSCATG00000045025DDX610098.137Cercocebus_atys
ENSRNOG00000053932Ddx610071.811ENSCATG00000009414-10070.961Cercocebus_atys
ENSRNOG00000053932Ddx610098.137ENSCLAG00000016749DDX610098.137Chinchilla_lanigera
ENSRNOG00000053932Ddx610098.137ENSCSAG00000002564DDX610098.137Chlorocebus_sabaeus
ENSRNOG00000053932Ddx68699.519ENSCHOG00000007565DDX610099.519Choloepus_hoffmanni
ENSRNOG00000053932Ddx610097.516ENSCPBG00000004323DDX610097.516Chrysemys_picta_bellii
ENSRNOG00000053932Ddx610087.992ENSCANG00000042664DDX610087.992Colobus_angolensis_palliatus
ENSRNOG00000053932Ddx610098.551ENSCGRG00001023465Ddx610098.551Cricetulus_griseus_chok1gshd
ENSRNOG00000053932Ddx610098.551ENSCGRG00000014165Ddx610098.551Cricetulus_griseus_crigri
ENSRNOG00000053932Ddx610088.430ENSCSEG00000006875ddx610088.636Cynoglossus_semilaevis
ENSRNOG00000053932Ddx69987.552ENSCVAG00000002540ddx69987.552Cyprinodon_variegatus
ENSRNOG00000053932Ddx69989.234ENSDARG00000061338ddx69988.820Danio_rerio
ENSRNOG00000053932Ddx610093.608ENSDNOG00000014447DDX610093.608Dasypus_novemcinctus
ENSRNOG00000053932Ddx68889.882ENSDORG00000001037Ddx610089.882Dipodomys_ordii
ENSRNOG00000053932Ddx66599.612ENSETEG00000007589-7099.612Echinops_telfairi
ENSRNOG00000053932Ddx65487.405ENSEBUG00000010009ddx67187.405Eptatretus_burgeri
ENSRNOG00000053932Ddx610098.344ENSEASG00005004961DDX610098.344Equus_asinus_asinus
ENSRNOG00000053932Ddx610098.344ENSECAG00000000539DDX610098.344Equus_caballus
ENSRNOG00000053932Ddx68889.647ENSEEUG00000002824DDX610089.647Erinaceus_europaeus
ENSRNOG00000053932Ddx610085.657ENSELUG00000022660ddx610085.801Esox_lucius
ENSRNOG00000053932Ddx610098.344ENSFCAG00000029360DDX610098.344Felis_catus
ENSRNOG00000053932Ddx69997.718ENSFALG00000009831DDX69997.718Ficedula_albicollis
ENSRNOG00000053932Ddx610098.137ENSFDAG00000012457DDX610098.137Fukomys_damarensis
ENSRNOG00000053932Ddx69987.759ENSFHEG00000021202ddx69987.785Fundulus_heteroclitus
ENSRNOG00000053932Ddx69986.157ENSGMOG00000009542ddx69985.950Gadus_morhua
ENSRNOG00000053932Ddx69997.925ENSGALG00000033064DDX69997.925Gallus_gallus
ENSRNOG00000053932Ddx69987.164ENSGAFG00000020279ddx69987.164Gambusia_affinis
ENSRNOG00000053932Ddx610087.397ENSGACG00000012258ddx610087.190Gasterosteus_aculeatus
ENSRNOG00000053932Ddx610097.308ENSGAGG00000020608DDX610097.308Gopherus_agassizii
ENSRNOG00000053932Ddx610076.860ENSGGOG00000038856-10076.860Gorilla_gorilla
ENSRNOG00000053932Ddx610068.323ENSGGOG00000023765-10068.323Gorilla_gorilla
ENSRNOG00000053932Ddx610087.785ENSGGOG00000016751DDX610087.785Gorilla_gorilla
ENSRNOG00000053932Ddx610089.234ENSHBUG00000009651ddx610089.234Haplochromis_burtoni
ENSRNOG00000053932Ddx610098.344ENSHGLG00000004316DDX610098.344Heterocephalus_glaber_female
ENSRNOG00000053932Ddx610098.344ENSHGLG00100014595DDX610098.344Heterocephalus_glaber_male
ENSRNOG00000053932Ddx610087.705ENSHCOG00000012451ddx610087.910Hippocampus_comes
ENSRNOG00000053932Ddx69987.785ENSIPUG00000000616ddx69987.578Ictalurus_punctatus
ENSRNOG00000053932Ddx610098.137ENSSTOG00000014475DDX610098.137Ictidomys_tridecemlineatus
ENSRNOG00000053932Ddx610098.137ENSJJAG00000021630Ddx610098.137Jaculus_jaculus
ENSRNOG00000053932Ddx69988.382ENSKMAG00000003546ddx69988.382Kryptolebias_marmoratus
ENSRNOG00000053932Ddx610083.027ENSLBEG00000017823ddx610078.235Labrus_bergylta
ENSRNOG00000053932Ddx69993.388ENSLACG00000017153DDX69992.769Latimeria_chalumnae
ENSRNOG00000053932Ddx69988.843ENSLOCG00000000770ddx69988.843Lepisosteus_oculatus
ENSRNOG00000053932Ddx69998.133ENSLAFG00000011012DDX69998.133Loxodonta_africana
ENSRNOG00000053932Ddx610098.137ENSMFAG00000042472DDX610098.137Macaca_fascicularis
ENSRNOG00000053932Ddx610069.358ENSMMUG00000047408-10070.186Macaca_mulatta
ENSRNOG00000053932Ddx610098.137ENSMMUG00000018651DDX610098.137Macaca_mulatta
ENSRNOG00000053932Ddx610098.137ENSMNEG00000033959DDX610098.137Macaca_nemestrina
ENSRNOG00000053932Ddx610098.137ENSMLEG00000028151DDX610098.137Mandrillus_leucophaeus
ENSRNOG00000053932Ddx610087.984ENSMAMG00000013732ddx610087.169Mastacembelus_armatus
ENSRNOG00000053932Ddx610089.441ENSMZEG00005024098ddx610089.441Maylandia_zebra
ENSRNOG00000053932Ddx69997.925ENSMGAG00000004123DDX69997.925Meleagris_gallopavo
ENSRNOG00000053932Ddx610098.137ENSMAUG00000008886Ddx610098.137Mesocricetus_auratus
ENSRNOG00000053932Ddx610098.344ENSMICG00000011519DDX610098.344Microcebus_murinus
ENSRNOG00000053932Ddx610098.551ENSMOCG00000002068Ddx610098.551Microtus_ochrogaster
ENSRNOG00000053932Ddx610081.612ENSMMOG00000001233ddx610081.818Mola_mola
ENSRNOG00000053932Ddx610098.344ENSMODG00000013375DDX610098.344Monodelphis_domestica
ENSRNOG00000053932Ddx610084.298ENSMALG00000009308ddx610084.298Monopterus_albus
ENSRNOG00000053932Ddx610094.824MGP_CAROLIEiJ_G0032122Ddx610094.824Mus_caroli
ENSRNOG00000053932Ddx610098.965ENSMUSG00000032097Ddx610098.965Mus_musculus
ENSRNOG00000053932Ddx610098.551MGP_PahariEiJ_G0014991Ddx610098.551Mus_pahari
ENSRNOG00000053932Ddx610098.344ENSMPUG00000004857DDX610098.344Mustela_putorius_furo
ENSRNOG00000053932Ddx610097.930ENSMLUG00000003671DDX610097.930Myotis_lucifugus
ENSRNOG00000053932Ddx610098.137ENSNGAG00000016848Ddx610098.137Nannospalax_galili
ENSRNOG00000053932Ddx610080.331ENSNBRG00000003507ddx610080.331Neolamprologus_brichardi
ENSRNOG00000053932Ddx610098.137ENSNLEG00000007372DDX610098.137Nomascus_leucogenys
ENSRNOG00000053932Ddx610087.371ENSMEUG00000010556DDX610087.371Notamacropus_eugenii
ENSRNOG00000053932Ddx68180.818ENSOPRG00000016112DDX610080.818Ochotona_princeps
ENSRNOG00000053932Ddx610098.137ENSODEG00000007950DDX610098.137Octodon_degus
ENSRNOG00000053932Ddx610089.441ENSONIG00000005756ddx610089.234Oreochromis_niloticus
ENSRNOG00000053932Ddx68898.598ENSOANG00000003751DDX610098.598Ornithorhynchus_anatinus
ENSRNOG00000053932Ddx610097.930ENSOCUG00000005849DDX610097.930Oryctolagus_cuniculus
ENSRNOG00000053932Ddx610087.992ENSORLG00000002506ddx610087.785Oryzias_latipes
ENSRNOG00000053932Ddx610088.199ENSORLG00020016534ddx610087.992Oryzias_latipes_hni
ENSRNOG00000053932Ddx610087.578ENSORLG00015005301ddx610087.992Oryzias_latipes_hsok
ENSRNOG00000053932Ddx610087.578ENSOMEG00000001347ddx610087.992Oryzias_melastigma
ENSRNOG00000053932Ddx610098.344ENSOGAG00000007978DDX610098.344Otolemur_garnettii
ENSRNOG00000053932Ddx69998.133ENSOARG00000011455DDX69998.133Ovis_aries
ENSRNOG00000053932Ddx610067.288ENSPPAG00000039963-10067.081Pan_paniscus
ENSRNOG00000053932Ddx610078.099ENSPPAG00000040387-10078.099Pan_paniscus
ENSRNOG00000053932Ddx610098.137ENSPPAG00000034894DDX610098.137Pan_paniscus
ENSRNOG00000053932Ddx610098.344ENSPPRG00000009039DDX610098.344Panthera_pardus
ENSRNOG00000053932Ddx610098.344ENSPTIG00000018551DDX610098.344Panthera_tigris_altaica
ENSRNOG00000053932Ddx610068.323ENSPTRG00000043896-10068.116Pan_troglodytes
ENSRNOG00000053932Ddx610098.137ENSPTRG00000004353DDX610098.137Pan_troglodytes
ENSRNOG00000053932Ddx610077.893ENSPTRG00000050136-10077.893Pan_troglodytes
ENSRNOG00000053932Ddx610098.137ENSPANG00000018963DDX610098.137Papio_anubis
ENSRNOG00000053932Ddx69989.234ENSPKIG00000013728ddx69988.820Paramormyrops_kingsleyae
ENSRNOG00000053932Ddx610096.296ENSPSIG00000013230DDX610096.296Pelodiscus_sinensis
ENSRNOG00000053932Ddx610077.366ENSPMGG00000023707ddx610077.433Periophthalmus_magnuspinnatus
ENSRNOG00000053932Ddx69979.253ENSPMAG00000007168ddx69979.296Petromyzon_marinus
ENSRNOG00000053932Ddx69987.992ENSPFOG00000010555ddx69987.992Poecilia_formosa
ENSRNOG00000053932Ddx69987.578ENSPLAG00000019684ddx69987.785Poecilia_latipinna
ENSRNOG00000053932Ddx69987.992ENSPMEG00000019775ddx69987.992Poecilia_mexicana
ENSRNOG00000053932Ddx69987.164ENSPREG00000016082ddx69987.371Poecilia_reticulata
ENSRNOG00000053932Ddx610094.824ENSPPYG00000003942DDX610094.824Pongo_abelii
ENSRNOG00000053932Ddx610089.027ENSPCAG00000004767DDX610089.027Procavia_capensis
ENSRNOG00000053932Ddx610098.344ENSPCOG00000020762DDX610098.344Propithecus_coquereli
ENSRNOG00000053932Ddx610090.476ENSPVAG00000005421DDX610090.476Pteropus_vampyrus
ENSRNOG00000053932Ddx610089.234ENSPNYG00000008538ddx610089.234Pundamilia_nyererei
ENSRNOG00000053932Ddx610070.588ENSPNAG00000010102ddx610069.777Pygocentrus_nattereri
ENSRNOG00000053932Ddx610069.530ENSRBIG00000038129-10069.262Rhinopithecus_bieti
ENSRNOG00000053932Ddx610098.137ENSRBIG00000032545DDX610098.137Rhinopithecus_bieti
ENSRNOG00000053932Ddx610067.288ENSRBIG00000027933-10068.116Rhinopithecus_bieti
ENSRNOG00000053932Ddx610069.877ENSRROG00000032664-10069.672Rhinopithecus_roxellana
ENSRNOG00000053932Ddx610070.393ENSRROG00000034419-10071.222Rhinopithecus_roxellana
ENSRNOG00000053932Ddx610098.137ENSRROG00000032478DDX610098.137Rhinopithecus_roxellana
ENSRNOG00000053932Ddx610098.344ENSSBOG00000029671DDX610098.344Saimiri_boliviensis_boliviensis
ENSRNOG00000053932Ddx610098.344ENSSHAG00000011424DDX610098.344Sarcophilus_harrisii
ENSRNOG00000053932Ddx69989.441ENSSFOG00015023211ddx69988.820Scleropages_formosus
ENSRNOG00000053932Ddx68250.378ENSSFOG00015005998DDX69749.492Scleropages_formosus
ENSRNOG00000053932Ddx610088.223ENSSMAG00000001253ddx610088.223Scophthalmus_maximus
ENSRNOG00000053932Ddx610089.463ENSSDUG00000019695ddx610089.669Seriola_dumerili
ENSRNOG00000053932Ddx610089.463ENSSLDG00000006167ddx610089.669Seriola_lalandi_dorsalis
ENSRNOG00000053932Ddx610098.344ENSSARG00000003219DDX610098.344Sorex_araneus
ENSRNOG00000053932Ddx69490.132ENSSPUG00000004404DDX69296.181Sphenodon_punctatus
ENSRNOG00000053932Ddx610089.256ENSSPAG00000023258ddx610089.463Stegastes_partitus
ENSRNOG00000053932Ddx610098.551ENSSSCG00000015097DDX610098.551Sus_scrofa
ENSRNOG00000053932Ddx69595.861ENSTGUG00000017360DDX610095.861Taeniopygia_guttata
ENSRNOG00000053932Ddx610088.017ENSTRUG00000011848ddx610088.223Takifugu_rubripes
ENSRNOG00000053932Ddx610088.843ENSTNIG00000016295ddx610089.050Tetraodon_nigroviridis
ENSRNOG00000053932Ddx610095.238ENSTTRG00000004313DDX610095.238Tursiops_truncatus
ENSRNOG00000053932Ddx610098.344ENSUAMG00000027749DDX610098.344Ursus_americanus
ENSRNOG00000053932Ddx610098.344ENSUMAG00000000993DDX610098.344Ursus_maritimus
ENSRNOG00000053932Ddx610096.066ENSVPAG00000005601DDX610096.066Vicugna_pacos
ENSRNOG00000053932Ddx610097.723ENSVVUG00000024121DDX610097.723Vulpes_vulpes
ENSRNOG00000053932Ddx69994.802ENSXETG00000010061ddx69995.218Xenopus_tropicalis
ENSRNOG00000053932Ddx69980.538ENSXCOG00000008560ddx69980.538Xiphophorus_couchianus
ENSRNOG00000053932Ddx69987.371ENSXMAG00000007620ddx69987.371Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000792heterochromatin24141902.IDAComponent
GO:0000932P-body-IEAComponent
GO:0000932P-body-ISOComponent
GO:0001520outer dense fiber24141902.IDAComponent
GO:0003674molecular_function-NDFunction
GO:0003676nucleic acid binding-IEAFunction
GO:0004386helicase activity-IEAFunction
GO:0005524ATP binding-IEAFunction
GO:0005634nucleus-ISOComponent
GO:0005730nucleolus24141902.IDAComponent
GO:0005737cytoplasm-ISOComponent
GO:0005739mitochondrion24141902.IDAComponent
GO:0005829cytosol-IEAComponent
GO:0005829cytosol-ISOComponent
GO:0005913cell-cell adherens junction24141902.IDAComponent
GO:0007283spermatogenesis24141902.IEPProcess
GO:0010494cytoplasmic stress granule-IEAComponent
GO:0010494cytoplasmic stress granule-ISOComponent
GO:0016442RISC complex-IEAComponent
GO:0016442RISC complex-ISOComponent
GO:0019074viral RNA genome packaging-IEAProcess
GO:0019074viral RNA genome packaging-ISOProcess
GO:0019827stem cell population maintenance-IEAProcess
GO:0019827stem cell population maintenance-ISOProcess
GO:0019904protein domain specific binding-IEAFunction
GO:0019904protein domain specific binding-ISOFunction
GO:0033391chromatoid body24141902.IDAComponent
GO:0033962cytoplasmic mRNA processing body assembly-IEAProcess
GO:0033962cytoplasmic mRNA processing body assembly-ISOProcess
GO:0036464cytoplasmic ribonucleoprotein granule-ISOComponent
GO:0045665negative regulation of neuron differentiation-IEAProcess
GO:0045665negative regulation of neuron differentiation-ISOProcess
GO:0048471perinuclear region of cytoplasm24141902.IDAComponent
GO:0048515spermatid differentiation24141902.IEPProcess
GO:0061830concave side of sperm head24141902.IDAComponent
GO:0097227sperm annulus24141902.IDAComponent

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