EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000054891 (Gene tree)
Gene ID
287249
Gene Symbol
Cnot6
Alias
CCR4|LOC287249|RGD1310783
Full Name
CCR4-NOT transcription complex%2C subunit 6
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Minus strand
Length
41080 bases
Position
chr10:35146337-35187416
Accession
1310783
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000074431Exo_endo_phosPF03372.234e-2211
ENSRNOP00000075273Exo_endo_phosPF03372.234e-2211
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000084509-1962-ENSRNOP00000074431555 (aa)-A0A0G2K816
ENSRNOT00000078960-1671-ENSRNOP00000075273556 (aa)-A0A0G2KA59
Gene Model
Click here to download ENSRNOG00000054891's gene model file
Pathways
Pathway IDPathway NameSource
rno03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000054891's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSRNOG00000054891Cnot610076.302ENSRNOG00000002075Cnot6l10076.302
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000054891Cnot610095.332ENSG00000113300CNOT6100100.000Homo_sapiens
ENSRNOG00000054891Cnot610085.510ENSAPOG00000009994cnot6b10085.510Acanthochromis_polyacanthus
ENSRNOG00000054891Cnot610095.707ENSAMEG00000000949CNOT69995.707Ailuropoda_melanoleuca
ENSRNOG00000054891Cnot610084.258ENSACIG00000016566cnot6b10084.258Amphilophus_citrinellus
ENSRNOG00000054891Cnot610085.510ENSAOCG00000006893cnot6b10085.510Amphiprion_ocellaris
ENSRNOG00000054891Cnot610085.510ENSAPEG00000016949cnot6b10085.510Amphiprion_percula
ENSRNOG00000054891Cnot610083.542ENSATEG00000007862cnot6b10083.542Anabas_testudineus
ENSRNOG00000054891Cnot610094.075ENSAPLG00000012715CNOT69994.075Anas_platyrhynchos
ENSRNOG00000054891Cnot610091.382ENSACAG00000016548CNOT610091.382Anolis_carolinensis
ENSRNOG00000054891Cnot610095.512ENSANAG00000030436CNOT69695.512Aotus_nancymaae
ENSRNOG00000054891Cnot610083.542ENSACLG00000008279cnot6b10084.436Astatotilapia_calliptera
ENSRNOG00000054891Cnot610085.125ENSAMXG00000019140cnot6a10085.125Astyanax_mexicanus
ENSRNOG00000054891Cnot610083.692ENSAMXG00000034694cnot6b10083.692Astyanax_mexicanus
ENSRNOG00000054891Cnot610095.871ENSBTAG00000017362CNOT610095.871Bos_taurus
ENSRNOG00000054891Cnot610095.332ENSCJAG00000009795CNOT610095.332Callithrix_jacchus
ENSRNOG00000054891Cnot610096.050ENSCAFG00000000464CNOT610096.050Canis_familiaris
ENSRNOG00000054891Cnot610096.050ENSCAFG00020002441CNOT610096.050Canis_lupus_dingo
ENSRNOG00000054891Cnot610095.332ENSCHIG00000019100CNOT610095.332Capra_hircus
ENSRNOG00000054891Cnot610093.716ENSTSYG00000003982CNOT610093.716Carlito_syrichta
ENSRNOG00000054891Cnot610091.382ENSCPOG00000035657CNOT610091.382Cavia_porcellus
ENSRNOG00000054891Cnot610091.382ENSCCAG00000033670CNOT610091.382Cebus_capucinus
ENSRNOG00000054891Cnot610095.332ENSCATG00000042014CNOT610095.332Cercocebus_atys
ENSRNOG00000054891Cnot610095.153ENSCLAG00000010489CNOT610095.153Chinchilla_lanigera
ENSRNOG00000054891Cnot610095.332ENSCSAG00000008165CNOT610095.332Chlorocebus_sabaeus
ENSRNOG00000054891Cnot610094.614ENSCHOG00000009680CNOT610094.614Choloepus_hoffmanni
ENSRNOG00000054891Cnot610093.357ENSCPBG00000008908CNOT610093.357Chrysemys_picta_bellii
ENSRNOG00000054891Cnot610095.512ENSCANG00000026756CNOT610095.512Colobus_angolensis_palliatus
ENSRNOG00000054891Cnot610097.666ENSCGRG00001011452Cnot610097.666Cricetulus_griseus_chok1gshd
ENSRNOG00000054891Cnot610096.050ENSCGRG00000010407Cnot610096.050Cricetulus_griseus_crigri
ENSRNOG00000054891Cnot610084.794ENSCSEG00000010939cnot6b10084.794Cynoglossus_semilaevis
ENSRNOG00000054891Cnot610084.229ENSCVAG00000010538cnot6b10084.229Cyprinodon_variegatus
ENSRNOG00000054891Cnot610082.796ENSDARG00000101072cnot6b10082.796Danio_rerio
ENSRNOG00000054891Cnot610084.767ENSDARG00000008255cnot6a10084.767Danio_rerio
ENSRNOG00000054891Cnot610095.332ENSDNOG00000041644CNOT610095.332Dasypus_novemcinctus
ENSRNOG00000054891Cnot610086.201ENSDORG00000001708Cnot610086.201Dipodomys_ordii
ENSRNOG00000054891Cnot610076.029ENSETEG00000006975CNOT610076.029Echinops_telfairi
ENSRNOG00000054891Cnot610095.153ENSEASG00005012794-10095.153Equus_asinus_asinus
ENSRNOG00000054891Cnot68990.562ENSEASG00005012957-9890.562Equus_asinus_asinus
ENSRNOG00000054891Cnot610095.871ENSECAG00000019325CNOT610095.871Equus_caballus
ENSRNOG00000054891Cnot610089.228ENSECAG00000012704-9989.228Equus_caballus
ENSRNOG00000054891Cnot610094.614ENSEEUG00000015382CNOT610094.614Erinaceus_europaeus
ENSRNOG00000054891Cnot610082.011ENSELUG00000015981cnot6b9982.011Esox_lucius
ENSRNOG00000054891Cnot610080.824ENSELUG00000024580cnot6a10080.824Esox_lucius
ENSRNOG00000054891Cnot610096.050ENSFCAG00000001881CNOT610096.050Felis_catus
ENSRNOG00000054891Cnot610094.255ENSFALG00000007699CNOT610094.255Ficedula_albicollis
ENSRNOG00000054891Cnot610094.794ENSFDAG00000001999CNOT610094.794Fukomys_damarensis
ENSRNOG00000054891Cnot66588.095ENSFHEG00000013756cnot6b9492.308Fundulus_heteroclitus
ENSRNOG00000054891Cnot69583.554ENSGMOG00000009767cnot6b9983.554Gadus_morhua
ENSRNOG00000054891Cnot610094.255ENSGALG00000034316CNOT610094.255Gallus_gallus
ENSRNOG00000054891Cnot610084.409ENSGAFG00000008525cnot6b10084.409Gambusia_affinis
ENSRNOG00000054891Cnot69581.664ENSGACG00000018046cnot6b9981.664Gasterosteus_aculeatus
ENSRNOG00000054891Cnot610077.558ENSGAGG00000012176CNOT610077.558Gopherus_agassizii
ENSRNOG00000054891Cnot610095.332ENSGGOG00000003675CNOT610095.332Gorilla_gorilla
ENSRNOG00000054891Cnot610083.721ENSHBUG00000002819cnot6b10084.615Haplochromis_burtoni
ENSRNOG00000054891Cnot610095.332ENSHGLG00000017756CNOT610095.332Heterocephalus_glaber_female
ENSRNOG00000054891Cnot610095.332ENSHGLG00100005747CNOT610095.332Heterocephalus_glaber_male
ENSRNOG00000054891Cnot610082.111ENSHCOG00000016176cnot6b10083.005Hippocampus_comes
ENSRNOG00000054891Cnot610083.333ENSIPUG00000017482cnot6b10083.333Ictalurus_punctatus
ENSRNOG00000054891Cnot610084.050ENSIPUG00000019831cnot6a10084.050Ictalurus_punctatus
ENSRNOG00000054891Cnot610095.512ENSSTOG00000002803CNOT610095.512Ictidomys_tridecemlineatus
ENSRNOG00000054891Cnot610095.153ENSJJAG00000012296Cnot610095.153Jaculus_jaculus
ENSRNOG00000054891Cnot610085.305ENSKMAG00000004640cnot6b10085.305Kryptolebias_marmoratus
ENSRNOG00000054891Cnot610082.826ENSLBEG00000027917cnot6b10083.721Labrus_bergylta
ENSRNOG00000054891Cnot610088.351ENSLOCG00000010102cnot6b9988.351Lepisosteus_oculatus
ENSRNOG00000054891Cnot610095.871ENSLAFG00000016742CNOT610095.871Loxodonta_africana
ENSRNOG00000054891Cnot610095.332ENSMFAG00000030867CNOT610095.332Macaca_fascicularis
ENSRNOG00000054891Cnot610095.332ENSMMUG00000018690CNOT610095.332Macaca_mulatta
ENSRNOG00000054891Cnot610095.332ENSMNEG00000038565CNOT610095.332Macaca_nemestrina
ENSRNOG00000054891Cnot610095.332ENSMLEG00000010555CNOT610095.332Mandrillus_leucophaeus
ENSRNOG00000054891Cnot610085.689ENSMAMG00000007515cnot6b10085.689Mastacembelus_armatus
ENSRNOG00000054891Cnot610083.542ENSMZEG00005012899cnot6b10084.436Maylandia_zebra
ENSRNOG00000054891Cnot610098.743ENSMAUG00000019798Cnot610098.743Mesocricetus_auratus
ENSRNOG00000054891Cnot69885.110ENSMICG00000028378-9985.110Microcebus_murinus
ENSRNOG00000054891Cnot610093.716ENSMICG00000013018-10093.716Microcebus_murinus
ENSRNOG00000054891Cnot610098.743ENSMOCG00000021662Cnot610098.743Microtus_ochrogaster
ENSRNOG00000054891Cnot610082.437ENSMMOG00000003227cnot6b10082.437Mola_mola
ENSRNOG00000054891Cnot610094.255ENSMODG00000003979CNOT610094.255Monodelphis_domestica
ENSRNOG00000054891Cnot610085.331ENSMALG00000014251cnot6b10085.331Monopterus_albus
ENSRNOG00000054891Cnot610098.923MGP_CAROLIEiJ_G0016277Cnot610098.923Mus_caroli
ENSRNOG00000054891Cnot610098.923ENSMUSG00000020362Cnot610098.923Mus_musculus
ENSRNOG00000054891Cnot610098.923MGP_PahariEiJ_G0017413Cnot610098.923Mus_pahari
ENSRNOG00000054891Cnot610098.564MGP_SPRETEiJ_G0017122Cnot610098.564Mus_spretus
ENSRNOG00000054891Cnot610095.871ENSMPUG00000000587CNOT69695.871Mustela_putorius_furo
ENSRNOG00000054891Cnot610093.416ENSMLUG00000010257CNOT610093.416Myotis_lucifugus
ENSRNOG00000054891Cnot610097.666ENSNGAG00000008269Cnot610097.666Nannospalax_galili
ENSRNOG00000054891Cnot610083.721ENSNBRG00000010798cnot6b10084.615Neolamprologus_brichardi
ENSRNOG00000054891Cnot610094.075ENSNLEG00000002322CNOT610094.075Nomascus_leucogenys
ENSRNOG00000054891Cnot68197.196ENSMEUG00000000025CNOT68197.196Notamacropus_eugenii
ENSRNOG00000054891Cnot68893.556ENSOPRG00000008244-8893.556Ochotona_princeps
ENSRNOG00000054891Cnot610094.255ENSODEG00000007041CNOT610094.255Octodon_degus
ENSRNOG00000054891Cnot67583.452ENSONIG00000013027cnot6b9983.452Oreochromis_niloticus
ENSRNOG00000054891Cnot610093.178ENSOANG00000010226CNOT610093.178Ornithorhynchus_anatinus
ENSRNOG00000054891Cnot610094.275ENSOCUG00000011083CNOT610094.275Oryctolagus_cuniculus
ENSRNOG00000054891Cnot610084.436ENSORLG00000005059cnot6b10084.436Oryzias_latipes
ENSRNOG00000054891Cnot610084.436ENSORLG00020012784cnot6b10084.436Oryzias_latipes_hni
ENSRNOG00000054891Cnot69483.556ENSORLG00015022658cnot6b9883.556Oryzias_latipes_hsok
ENSRNOG00000054891Cnot610084.615ENSOMEG00000005295cnot6b10084.615Oryzias_melastigma
ENSRNOG00000054891Cnot69494.847ENSOGAG00000032470CNOT610094.847Otolemur_garnettii
ENSRNOG00000054891Cnot69795.018ENSOARG00000001003CNOT610095.018Ovis_aries
ENSRNOG00000054891Cnot610095.332ENSPPAG00000032253CNOT610095.332Pan_paniscus
ENSRNOG00000054891Cnot610095.871ENSPPRG00000011912CNOT610095.871Panthera_pardus
ENSRNOG00000054891Cnot610095.871ENSPTIG00000016794CNOT610095.871Panthera_tigris_altaica
ENSRNOG00000054891Cnot610095.332ENSPTRG00000017636CNOT610095.332Pan_troglodytes
ENSRNOG00000054891Cnot610095.332ENSPANG00000016191CNOT610095.332Papio_anubis
ENSRNOG00000054891Cnot610085.305ENSPKIG00000021368cnot6b10085.305Paramormyrops_kingsleyae
ENSRNOG00000054891Cnot69893.750ENSPSIG00000017307CNOT610093.750Pelodiscus_sinensis
ENSRNOG00000054891Cnot610084.258ENSPMGG00000011238cnot6b10084.258Periophthalmus_magnuspinnatus
ENSRNOG00000054891Cnot610097.666ENSPEMG00000000627Cnot610097.666Peromyscus_maniculatus_bairdii
ENSRNOG00000054891Cnot610094.255ENSPCIG00000020319CNOT69994.255Phascolarctos_cinereus
ENSRNOG00000054891Cnot610084.229ENSPFOG00000006291cnot6b10084.229Poecilia_formosa
ENSRNOG00000054891Cnot610081.655ENSPLAG00000008266cnot6b10081.655Poecilia_latipinna
ENSRNOG00000054891Cnot610084.409ENSPMEG00000009091cnot6b10084.409Poecilia_mexicana
ENSRNOG00000054891Cnot610082.975ENSPREG00000003713cnot6b10082.975Poecilia_reticulata
ENSRNOG00000054891Cnot610095.332ENSPPYG00000016137CNOT610095.332Pongo_abelii
ENSRNOG00000054891Cnot67196.992ENSPCAG00000005599-7196.992Procavia_capensis
ENSRNOG00000054891Cnot610090.126ENSPCOG00000017359CNOT610090.844Propithecus_coquereli
ENSRNOG00000054891Cnot610090.844ENSPVAG00000003069CNOT610090.844Pteropus_vampyrus
ENSRNOG00000054891Cnot610083.363ENSPNYG00000000321cnot6b10084.258Pundamilia_nyererei
ENSRNOG00000054891Cnot610085.305ENSPNAG00000029586cnot6a10085.305Pygocentrus_nattereri
ENSRNOG00000054891Cnot610084.409ENSPNAG00000028816cnot6b10084.409Pygocentrus_nattereri
ENSRNOG00000054891Cnot610095.153ENSRBIG00000004309CNOT610095.153Rhinopithecus_bieti
ENSRNOG00000054891Cnot610095.153ENSRROG00000035378CNOT610095.455Rhinopithecus_roxellana
ENSRNOG00000054891Cnot610095.332ENSSBOG00000030494CNOT610095.332Saimiri_boliviensis_boliviensis
ENSRNOG00000054891Cnot610094.255ENSSHAG00000017436CNOT610094.255Sarcophilus_harrisii
ENSRNOG00000054891Cnot610086.559ENSSFOG00015015133CNOT610086.559Scleropages_formosus
ENSRNOG00000054891Cnot610084.767ENSSFOG00015022383cnot6a9684.767Scleropages_formosus
ENSRNOG00000054891Cnot610083.542ENSSMAG00000003084cnot6b10083.542Scophthalmus_maximus
ENSRNOG00000054891Cnot610085.331ENSSDUG00000004151cnot6b10085.331Seriola_dumerili
ENSRNOG00000054891Cnot610084.615ENSSLDG00000004448cnot6b10085.510Seriola_lalandi_dorsalis
ENSRNOG00000054891Cnot66475.140ENSSARG00000012650-10075.140Sorex_araneus
ENSRNOG00000054891Cnot610092.998ENSSPUG00000007893CNOT610092.998Sphenodon_punctatus
ENSRNOG00000054891Cnot610085.331ENSSPAG00000000149cnot6b10085.331Stegastes_partitus
ENSRNOG00000054891Cnot610095.512ENSSSCG00000014009CNOT610095.887Sus_scrofa
ENSRNOG00000054891Cnot610093.896ENSTGUG00000001119CNOT610093.896Taeniopygia_guttata
ENSRNOG00000054891Cnot610082.944ENSTRUG00000002818cnot6b10082.944Takifugu_rubripes
ENSRNOG00000054891Cnot610083.303ENSTNIG00000004443cnot6b9983.303Tetraodon_nigroviridis
ENSRNOG00000054891Cnot67789.062ENSTBEG00000017094-8889.062Tupaia_belangeri
ENSRNOG00000054891Cnot610095.691ENSTTRG00000009363CNOT610095.691Tursiops_truncatus
ENSRNOG00000054891Cnot67796.503ENSUAMG00000004579CNOT68896.503Ursus_americanus
ENSRNOG00000054891Cnot610091.438ENSUMAG00000024577CNOT610091.438Ursus_maritimus
ENSRNOG00000054891Cnot68394.626ENSVPAG00000003593CNOT68394.626Vicugna_pacos
ENSRNOG00000054891Cnot610096.050ENSVVUG00000026940CNOT610096.050Vulpes_vulpes
ENSRNOG00000054891Cnot610082.014ENSXCOG00000003360cnot6b10082.014Xiphophorus_couchianus
ENSRNOG00000054891Cnot610084.409ENSXMAG00000008730cnot6b10084.409Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000289nuclear-transcribed mRNA poly(A) tail shortening-IEAProcess
GO:0000289nuclear-transcribed mRNA poly(A) tail shortening-ISOProcess
GO:0000289nuclear-transcribed mRNA poly(A) tail shortening-ISSProcess
GO:0003674molecular_function-NDFunction
GO:0003723RNA binding-IEAFunction
GO:0004532exoribonuclease activity-ISOFunction
GO:0004532exoribonuclease activity-ISSFunction
GO:0004535poly(A)-specific ribonuclease activity-IEAFunction
GO:0004535poly(A)-specific ribonuclease activity-ISOFunction
GO:0004535poly(A)-specific ribonuclease activity-ISSFunction
GO:0005575cellular_component-NDComponent
GO:0005634nucleus-IEAComponent
GO:0005737cytoplasm-IEAComponent
GO:0006417regulation of translation-IEAProcess
GO:0008150biological_process-NDProcess
GO:0008284positive regulation of cell proliferation-IEAProcess
GO:0008284positive regulation of cell proliferation-ISOProcess
GO:0010606positive regulation of cytoplasmic mRNA processing body assembly-IEAProcess
GO:0010606positive regulation of cytoplasmic mRNA processing body assembly-ISOProcess
GO:0030014CCR4-NOT complex-IEAComponent
GO:0030014CCR4-NOT complex-ISOComponent
GO:0030014CCR4-NOT complex-ISSComponent
GO:0031047gene silencing by RNA-IEAProcess
GO:0043928exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay-IEAProcess
GO:0043928exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay-ISOProcess
GO:0043928exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay-ISSProcess
GO:0046872metal ion binding-IEAFunction
GO:0070966nuclear-transcribed mRNA catabolic process, no-go decay-IEAProcess
GO:0070966nuclear-transcribed mRNA catabolic process, no-go decay-ISOProcess
GO:0070966nuclear-transcribed mRNA catabolic process, no-go decay-ISSProcess
GO:0090503RNA phosphodiester bond hydrolysis, exonucleolytic-IEAProcess
GO:2000327positive regulation of nuclear receptor transcription coactivator activity-IEAProcess
GO:2000327positive regulation of nuclear receptor transcription coactivator activity-ISOProcess
GO:2000327positive regulation of nuclear receptor transcription coactivator activity-ISSProcess

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