EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000054901 (Gene tree)
Gene ID: 295602
Gene Symbol: Rif1
Alias: LOC295602|RGD1562474
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 47904 bases
Position: chr3:37599728-37647631
Accession: 1562474
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000075681	Rif1_N	PF12231.8	4.3e-73	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000090575	-	7251	XM_008761831	ENSRNOP00000075681	2416 (aa)	XP_008760053	A0A0G2KB73

Gene Model

Click here to download ENSRNOG00000054901's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno04550	Signaling pathways regulating pluripotency of stem cells	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000054901's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000054901	Rif1	100	68.408	ENSG00000080345	RIF1	97	84.318	Homo_sapiens
ENSRNOG00000054901	Rif1	100	68.795	ENSAMEG00000008461	RIF1	100	68.795	Ailuropoda_melanoleuca
ENSRNOG00000054901	Rif1	67	47.936	ENSACIG00000017765	rif1	65	51.888	Amphilophus_citrinellus
ENSRNOG00000054901	Rif1	53	46.565	ENSAOCG00000017231	rif1	66	45.524	Amphiprion_ocellaris
ENSRNOG00000054901	Rif1	64	55.400	ENSAPEG00000013228	rif1	52	51.657	Amphiprion_percula
ENSRNOG00000054901	Rif1	72	46.417	ENSATEG00000022887	rif1	67	46.440	Anabas_testudineus
ENSRNOG00000054901	Rif1	84	64.470	ENSAPLG00000007092	RIF1	92	64.470	Anas_platyrhynchos
ENSRNOG00000054901	Rif1	85	58.084	ENSACAG00000003714	RIF1	90	58.084	Anolis_carolinensis
ENSRNOG00000054901	Rif1	100	68.101	ENSANAG00000024840	RIF1	99	68.101	Aotus_nancymaae
ENSRNOG00000054901	Rif1	74	47.740	ENSAMXG00000010910	rif1	65	49.761	Astyanax_mexicanus
ENSRNOG00000054901	Rif1	94	67.854	ENSBTAG00000021020	RIF1	99	67.854	Bos_taurus
ENSRNOG00000054901	Rif1	100	67.699	ENSCJAG00000003138	RIF1	99	67.699	Callithrix_jacchus
ENSRNOG00000054901	Rif1	100	67.014	ENSCAFG00000005670	RIF1	97	67.108	Canis_familiaris
ENSRNOG00000054901	Rif1	100	67.301	ENSCAFG00020016401	RIF1	99	67.449	Canis_lupus_dingo
ENSRNOG00000054901	Rif1	100	68.089	ENSCHIG00000020327	RIF1	99	68.089	Capra_hircus
ENSRNOG00000054901	Rif1	97	81.720	ENSTSYG00000008861	RIF1	99	81.720	Carlito_syrichta
ENSRNOG00000054901	Rif1	82	76.744	ENSCAPG00000008957	RIF1	99	76.744	Cavia_aperea
ENSRNOG00000054901	Rif1	100	65.138	ENSCPOG00000037898	RIF1	99	65.083	Cavia_porcellus
ENSRNOG00000054901	Rif1	100	66.962	ENSCCAG00000024760	RIF1	99	66.962	Cebus_capucinus
ENSRNOG00000054901	Rif1	100	68.690	ENSCATG00000033353	RIF1	99	68.690	Cercocebus_atys
ENSRNOG00000054901	Rif1	96	66.402	ENSCLAG00000001517	RIF1	99	66.263	Chinchilla_lanigera
ENSRNOG00000054901	Rif1	100	68.690	ENSCSAG00000016089	RIF1	99	68.690	Chlorocebus_sabaeus
ENSRNOG00000054901	Rif1	97	69.198	ENSCHOG00000007187	RIF1	97	69.198	Choloepus_hoffmanni
ENSRNOG00000054901	Rif1	90	67.544	ENSCPBG00000025885	RIF1	96	68.713	Chrysemys_picta_bellii
ENSRNOG00000054901	Rif1	100	67.523	ENSCANG00000028962	RIF1	100	68.052	Colobus_angolensis_palliatus
ENSRNOG00000054901	Rif1	100	79.492	ENSCGRG00001024589	Rif1	100	79.738	Cricetulus_griseus_chok1gshd
ENSRNOG00000054901	Rif1	99	80.215	ENSCGRG00000010713	Rif1	100	80.464	Cricetulus_griseus_crigri
ENSRNOG00000054901	Rif1	52	46.749	ENSCSEG00000003945	rif1	53	47.791	Cynoglossus_semilaevis
ENSRNOG00000054901	Rif1	65	46.565	ENSCVAG00000022479	rif1	66	46.787	Cyprinodon_variegatus
ENSRNOG00000054901	Rif1	58	45.645	ENSDARG00000062650	rif1	51	49.518	Danio_rerio
ENSRNOG00000054901	Rif1	99	66.332	ENSDNOG00000011194	RIF1	97	66.466	Dasypus_novemcinctus
ENSRNOG00000054901	Rif1	94	66.971	ENSETEG00000012421	RIF1	91	66.971	Echinops_telfairi
ENSRNOG00000054901	Rif1	95	87.948	ENSEASG00005023434	RIF1	99	87.948	Equus_asinus_asinus
ENSRNOG00000054901	Rif1	96	86.248	ENSECAG00000012679	RIF1	99	86.248	Equus_caballus
ENSRNOG00000054901	Rif1	66	46.771	ENSELUG00000006826	rif1	55	48.694	Esox_lucius
ENSRNOG00000054901	Rif1	100	67.509	ENSFCAG00000029742	RIF1	99	67.629	Felis_catus
ENSRNOG00000054901	Rif1	78	62.883	ENSFALG00000013874	RIF1	91	62.883	Ficedula_albicollis
ENSRNOG00000054901	Rif1	100	68.472	ENSFDAG00000006538	RIF1	99	68.257	Fukomys_damarensis
ENSRNOG00000054901	Rif1	63	48.424	ENSFHEG00000013721	rif1	50	48.178	Fundulus_heteroclitus
ENSRNOG00000054901	Rif1	57	50.350	ENSGMOG00000003517	rif1	82	49.194	Gadus_morhua
ENSRNOG00000054901	Rif1	81	57.398	ENSGALG00000012484	RIF1	93	57.398	Gallus_gallus
ENSRNOG00000054901	Rif1	61	52.880	ENSGAFG00000017196	rif1	67	51.066	Gambusia_affinis
ENSRNOG00000054901	Rif1	59	54.667	ENSGACG00000008579	rif1	65	54.222	Gasterosteus_aculeatus
ENSRNOG00000054901	Rif1	91	66.862	ENSGAGG00000012595	RIF1	99	68.035	Gopherus_agassizii
ENSRNOG00000054901	Rif1	89	85.816	ENSGGOG00000040178	RIF1	96	85.816	Gorilla_gorilla
ENSRNOG00000054901	Rif1	63	44.395	ENSHBUG00000007125	rif1	57	47.839	Haplochromis_burtoni
ENSRNOG00000054901	Rif1	94	67.150	ENSHGLG00100009807	RIF1	99	66.965	Heterocephalus_glaber_male
ENSRNOG00000054901	Rif1	65	46.994	ENSHCOG00000015943	rif1	59	47.314	Hippocampus_comes
ENSRNOG00000054901	Rif1	63	49.684	ENSIPUG00000021703	rif1	62	47.975	Ictalurus_punctatus
ENSRNOG00000054901	Rif1	100	70.301	ENSSTOG00000020712	RIF1	99	70.301	Ictidomys_tridecemlineatus
ENSRNOG00000054901	Rif1	99	68.215	ENSJJAG00000023000	Rif1	100	68.503	Jaculus_jaculus
ENSRNOG00000054901	Rif1	62	51.751	ENSLBEG00000023196	rif1	55	49.237	Labrus_bergylta
ENSRNOG00000054901	Rif1	86	61.404	ENSLACG00000005425	RIF1	90	61.404	Latimeria_chalumnae
ENSRNOG00000054901	Rif1	64	50.622	ENSLOCG00000002657	rif1	82	47.937	Lepisosteus_oculatus
ENSRNOG00000054901	Rif1	100	67.086	ENSLAFG00000009796	RIF1	100	67.086	Loxodonta_africana
ENSRNOG00000054901	Rif1	100	68.650	ENSMFAG00000032233	RIF1	99	68.650	Macaca_fascicularis
ENSRNOG00000054901	Rif1	100	68.650	ENSMMUG00000008611	RIF1	99	68.650	Macaca_mulatta
ENSRNOG00000054901	Rif1	100	68.650	ENSMNEG00000031616	RIF1	99	68.650	Macaca_nemestrina
ENSRNOG00000054901	Rif1	100	68.810	ENSMLEG00000042945	RIF1	99	68.810	Mandrillus_leucophaeus
ENSRNOG00000054901	Rif1	74	45.819	ENSMZEG00005020920	rif1	72	47.963	Maylandia_zebra
ENSRNOG00000054901	Rif1	87	54.610	ENSMGAG00000012732	RIF1	94	55.000	Meleagris_gallopavo
ENSRNOG00000054901	Rif1	95	94.536	ENSMAUG00000013158	Rif1	99	94.536	Mesocricetus_auratus
ENSRNOG00000054901	Rif1	100	69.490	ENSMICG00000046127	RIF1	99	69.530	Microcebus_murinus
ENSRNOG00000054901	Rif1	100	78.434	ENSMOCG00000009381	Rif1	100	78.434	Microtus_ochrogaster
ENSRNOG00000054901	Rif1	63	47.771	ENSMMOG00000006519	rif1	64	47.642	Mola_mola
ENSRNOG00000054901	Rif1	100	55.641	ENSMODG00000003703	RIF1	99	55.556	Monodelphis_domestica
ENSRNOG00000054901	Rif1	64	46.667	ENSMALG00000016759	rif1	65	49.282	Monopterus_albus
ENSRNOG00000054901	Rif1	100	85.467	MGP_CAROLIEiJ_G0023555	Rif1	100	85.508	Mus_caroli
ENSRNOG00000054901	Rif1	100	86.349	ENSMUSG00000036202	Rif1	100	86.390	Mus_musculus
ENSRNOG00000054901	Rif1	100	84.280	MGP_PahariEiJ_G0025006	Rif1	100	84.280	Mus_pahari
ENSRNOG00000054901	Rif1	100	86.143	MGP_SPRETEiJ_G0024476	Rif1	100	86.266	Mus_spretus
ENSRNOG00000054901	Rif1	100	67.429	ENSMPUG00000000371	RIF1	99	67.429	Mustela_putorius_furo
ENSRNOG00000054901	Rif1	89	66.879	ENSMLUG00000003376	RIF1	100	66.879	Myotis_lucifugus
ENSRNOG00000054901	Rif1	100	72.127	ENSNGAG00000009268	Rif1	99	72.453	Nannospalax_galili
ENSRNOG00000054901	Rif1	65	49.154	ENSNBRG00000014257	rif1	69	49.072	Neolamprologus_brichardi
ENSRNOG00000054901	Rif1	100	66.747	ENSNLEG00000010955	RIF1	99	66.800	Nomascus_leucogenys
ENSRNOG00000054901	Rif1	76	75.336	ENSMEUG00000007601	-	83	75.336	Notamacropus_eugenii
ENSRNOG00000054901	Rif1	100	66.111	ENSODEG00000003950	RIF1	99	66.599	Octodon_degus
ENSRNOG00000054901	Rif1	70	70.554	ENSOANG00000006078	-	72	70.554	Ornithorhynchus_anatinus
ENSRNOG00000054901	Rif1	100	66.976	ENSOCUG00000017435	RIF1	99	67.056	Oryctolagus_cuniculus
ENSRNOG00000054901	Rif1	64	45.976	ENSORLG00020001302	rif1	68	46.099	Oryzias_latipes_hni
ENSRNOG00000054901	Rif1	63	46.006	ENSORLG00015000009	rif1	61	49.228	Oryzias_latipes_hsok
ENSRNOG00000054901	Rif1	64	46.123	ENSOMEG00000021513	rif1	62	49.818	Oryzias_melastigma
ENSRNOG00000054901	Rif1	100	67.926	ENSOGAG00000006141	RIF1	99	67.926	Otolemur_garnettii
ENSRNOG00000054901	Rif1	100	68.249	ENSOARG00000008930	RIF1	99	68.237	Ovis_aries
ENSRNOG00000054901	Rif1	100	68.394	ENSPPAG00000023754	RIF1	99	68.394	Pan_paniscus
ENSRNOG00000054901	Rif1	100	67.415	ENSPPRG00000003618	RIF1	99	67.482	Panthera_pardus
ENSRNOG00000054901	Rif1	100	67.455	ENSPTIG00000020652	RIF1	99	67.522	Panthera_tigris_altaica
ENSRNOG00000054901	Rif1	100	68.514	ENSPTRG00000012534	RIF1	99	68.514	Pan_troglodytes
ENSRNOG00000054901	Rif1	100	68.650	ENSPANG00000008525	RIF1	99	68.650	Papio_anubis
ENSRNOG00000054901	Rif1	70	50.641	ENSPKIG00000004267	rif1	66	50.641	Paramormyrops_kingsleyae
ENSRNOG00000054901	Rif1	64	44.411	ENSPMGG00000016141	rif1	76	43.807	Periophthalmus_magnuspinnatus
ENSRNOG00000054901	Rif1	99	80.619	ENSPEMG00000000446	Rif1	99	80.536	Peromyscus_maniculatus_bairdii
ENSRNOG00000054901	Rif1	75	55.826	ENSPCIG00000009185	RIF1	99	55.139	Phascolarctos_cinereus
ENSRNOG00000054901	Rif1	64	49.281	ENSPFOG00000017804	rif1	67	49.476	Poecilia_formosa
ENSRNOG00000054901	Rif1	57	49.536	ENSPFOG00000000554	-	64	49.953	Poecilia_formosa
ENSRNOG00000054901	Rif1	64	49.040	ENSPLAG00000017945	rif1	69	49.072	Poecilia_latipinna
ENSRNOG00000054901	Rif1	53	48.083	ENSPMEG00000006897	-	61	48.111	Poecilia_mexicana
ENSRNOG00000054901	Rif1	65	48.284	ENSPREG00000018052	rif1	65	51.161	Poecilia_reticulata
ENSRNOG00000054901	Rif1	100	68.449	ENSPPYG00000012846	RIF1	99	68.501	Pongo_abelii
ENSRNOG00000054901	Rif1	83	80.583	ENSPCAG00000009032	RIF1	83	80.583	Procavia_capensis
ENSRNOG00000054901	Rif1	100	69.543	ENSPCOG00000027888	RIF1	99	69.703	Propithecus_coquereli
ENSRNOG00000054901	Rif1	93	83.200	ENSPVAG00000014276	RIF1	95	83.200	Pteropus_vampyrus
ENSRNOG00000054901	Rif1	67	47.201	ENSPNYG00000012940	rif1	71	46.065	Pundamilia_nyererei
ENSRNOG00000054901	Rif1	100	68.061	ENSRBIG00000003704	RIF1	99	68.114	Rhinopithecus_bieti
ENSRNOG00000054901	Rif1	100	68.690	ENSRROG00000028206	RIF1	99	68.742	Rhinopithecus_roxellana
ENSRNOG00000054901	Rif1	97	83.871	ENSSBOG00000029530	RIF1	99	83.871	Saimiri_boliviensis_boliviensis
ENSRNOG00000054901	Rif1	100	55.079	ENSSHAG00000018552	RIF1	99	54.935	Sarcophilus_harrisii
ENSRNOG00000054901	Rif1	66	49.651	ENSSFOG00015021539	rif1	70	50.525	Scleropages_formosus
ENSRNOG00000054901	Rif1	52	47.447	ENSSMAG00000011704	rif1	60	47.923	Scophthalmus_maximus
ENSRNOG00000054901	Rif1	63	49.194	ENSSDUG00000015632	rif1	67	48.878	Seriola_dumerili
ENSRNOG00000054901	Rif1	58	78.840	ENSSARG00000007161	-	59	78.840	Sorex_araneus
ENSRNOG00000054901	Rif1	87	61.369	ENSSPUG00000003062	RIF1	94	61.614	Sphenodon_punctatus
ENSRNOG00000054901	Rif1	51	56.707	ENSSPAG00000018359	rif1	74	55.758	Stegastes_partitus
ENSRNOG00000054901	Rif1	100	68.478	ENSSSCG00000016395	RIF1	99	68.720	Sus_scrofa
ENSRNOG00000054901	Rif1	66	47.656	ENSTRUG00000015808	rif1	71	46.986	Takifugu_rubripes
ENSRNOG00000054901	Rif1	67	47.123	ENSTNIG00000011538	rif1	71	46.305	Tetraodon_nigroviridis
ENSRNOG00000054901	Rif1	83	84.713	ENSTBEG00000016082	RIF1	82	84.713	Tupaia_belangeri
ENSRNOG00000054901	Rif1	100	69.190	ENSTTRG00000011190	RIF1	99	69.271	Tursiops_truncatus
ENSRNOG00000054901	Rif1	90	66.459	ENSUAMG00000026385	RIF1	99	66.459	Ursus_americanus
ENSRNOG00000054901	Rif1	100	68.220	ENSUMAG00000000337	RIF1	99	68.220	Ursus_maritimus
ENSRNOG00000054901	Rif1	100	67.082	ENSVPAG00000002162	RIF1	99	67.042	Vicugna_pacos
ENSRNOG00000054901	Rif1	100	67.569	ENSVVUG00000011293	RIF1	99	67.569	Vulpes_vulpes
ENSRNOG00000054901	Rif1	53	48.729	ENSXETG00000004530	rif1	55	48.582	Xenopus_tropicalis
ENSRNOG00000054901	Rif1	65	44.698	ENSXMAG00000000506	rif1	64	45.907	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	-	IEA	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0000723	telomere maintenance	21873635.	IBA	Process
GO:0000723	telomere maintenance	-	ISO	Process
GO:0000781	chromosome, telomeric region	-	IEA	Component
GO:0000781	chromosome, telomeric region	-	ISO	Component
GO:0000790	nuclear chromatin	-	IEA	Component
GO:0000790	nuclear chromatin	-	ISO	Component
GO:0000793	condensed chromosome	-	IEA	Component
GO:0000793	condensed chromosome	-	ISO	Component
GO:0001939	female pronucleus	-	IEA	Component
GO:0001939	female pronucleus	-	ISO	Component
GO:0001940	male pronucleus	-	IEA	Component
GO:0001940	male pronucleus	-	ISO	Component
GO:0003674	molecular_function	-	ND	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005886	plasma membrane	-	IEA	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0006348	chromatin silencing at telomere	-	IEA	Process
GO:0006348	chromatin silencing at telomere	-	ISO	Process
GO:0006974	cellular response to DNA damage stimulus	-	ISO	Process
GO:0008150	biological_process	-	ND	Process
GO:0016604	nuclear body	-	IEA	Component
GO:0016604	nuclear body	-	ISO	Component
GO:0019827	stem cell population maintenance	-	IEA	Process
GO:0019827	stem cell population maintenance	-	ISO	Process
GO:0031965	nuclear membrane	-	IEA	Component
GO:0031965	nuclear membrane	-	ISO	Component
GO:0035861	site of double-strand break	-	IEA	Component
GO:0035861	site of double-strand break	-	ISO	Component
GO:0043247	telomere maintenance in response to DNA damage	-	IEA	Process
GO:0043247	telomere maintenance in response to DNA damage	-	ISO	Process
GO:0045830	positive regulation of isotype switching	-	IEA	Process
GO:0045830	positive regulation of isotype switching	-	ISO	Process
GO:0051233	spindle midzone	-	IEA	Component
GO:0051233	spindle midzone	-	ISO	Component
GO:0051574	positive regulation of histone H3-K9 methylation	-	IEA	Process
GO:0051574	positive regulation of histone H3-K9 methylation	-	ISO	Process
GO:1990830	cellular response to leukemia inhibitory factor	-	IEA	Process
GO:1990830	cellular response to leukemia inhibitory factor	-	ISO	Process
GO:2000042	negative regulation of double-strand break repair via homologous recombination	-	IEA	Process
GO:2000042	negative regulation of double-strand break repair via homologous recombination	-	ISO	Process
GO:2001034	positive regulation of double-strand break repair via nonhomologous end joining	-	IEA	Process
GO:2001034	positive regulation of double-strand break repair via nonhomologous end joining	-	ISO	Process