EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000055028 (Gene tree)
Gene ID: 309001
Gene Symbol: Setd1a
Alias: LOC309001|RGD1311624|Setd1b
Full Name: SET domain containing 1A
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 22889 bases
Position: chr1:199225100-199247988
Accession: 1311624
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000073937	RRM_1	PF00076.22	6.6e-06	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000088606	-	6066	-	ENSRNOP00000073937	1717 (aa)	-	A0A0G2K6T6

Gene Model

Click here to download ENSRNOG00000055028's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000055028's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000055028	Setd1a	100	88.812	ENSG00000099381	SETD1A	100	89.108	Homo_sapiens
ENSRNOG00000055028	Setd1a	74	70.607	ENSAPLG00000005217	SETD1B	53	71.523	Anas_platyrhynchos
ENSRNOG00000055028	Setd1a	100	88.555	ENSBTAG00000002345	SETD1A	100	88.728	Bos_taurus
ENSRNOG00000055028	Setd1a	50	70.684	ENSCJAG00000016930	SETD1B	58	70.861	Callithrix_jacchus
ENSRNOG00000055028	Setd1a	100	88.239	ENSCJAG00000003000	SETD1A	100	88.876	Callithrix_jacchus
ENSRNOG00000055028	Setd1a	100	89.255	ENSCAFG00000016758	SETD1A	100	88.446	Canis_familiaris
ENSRNOG00000055028	Setd1a	100	89.562	ENSCAFG00020018051	SETD1A	100	88.754	Canis_lupus_dingo
ENSRNOG00000055028	Setd1a	51	62.424	ENSCHIG00000013406	SETD1B	63	67.273	Capra_hircus
ENSRNOG00000055028	Setd1a	100	89.133	ENSCHIG00000025896	SETD1A	100	88.728	Capra_hircus
ENSRNOG00000055028	Setd1a	100	90.169	ENSCPOG00000025456	SETD1A	100	90.518	Cavia_porcellus
ENSRNOG00000055028	Setd1a	100	88.232	ENSCCAG00000025600	SETD1A	100	88.812	Cebus_capucinus
ENSRNOG00000055028	Setd1a	55	70.684	ENSCCAG00000031928	SETD1B	57	70.861	Cebus_capucinus
ENSRNOG00000055028	Setd1a	100	89.205	ENSCATG00000035417	SETD1A	100	89.147	Cercocebus_atys
ENSRNOG00000055028	Setd1a	100	88.153	ENSCLAG00000011583	SETD1A	100	95.565	Chinchilla_lanigera
ENSRNOG00000055028	Setd1a	100	89.333	ENSCSAG00000005791	SETD1A	100	89.275	Chlorocebus_sabaeus
ENSRNOG00000055028	Setd1a	100	95.186	ENSCGRG00001022425	-	100	95.360	Cricetulus_griseus_chok1gshd
ENSRNOG00000055028	Setd1a	100	95.244	ENSCGRG00000016965	-	100	95.418	Cricetulus_griseus_crigri
ENSRNOG00000055028	Setd1a	51	70.358	ENSFCAG00000013185	SETD1B	58	66.970	Felis_catus
ENSRNOG00000055028	Setd1a	100	90.209	ENSFCAG00000002588	SETD1A	100	89.803	Felis_catus
ENSRNOG00000055028	Setd1a	100	86.783	ENSGGOG00000016052	SETD1A	100	87.486	Gorilla_gorilla
ENSRNOG00000055028	Setd1a	100	91.125	ENSSTOG00000005369	SETD1A	100	91.299	Ictidomys_tridecemlineatus
ENSRNOG00000055028	Setd1a	63	66.964	ENSLACG00000018379	SETD1B	56	71.523	Latimeria_chalumnae
ENSRNOG00000055028	Setd1a	100	87.485	ENSLAFG00000023335	SETD1A	100	87.427	Loxodonta_africana
ENSRNOG00000055028	Setd1a	100	89.211	ENSMFAG00000003435	SETD1A	100	89.153	Macaca_fascicularis
ENSRNOG00000055028	Setd1a	100	88.747	ENSMMUG00000003233	SETD1A	100	95.161	Macaca_mulatta
ENSRNOG00000055028	Setd1a	100	88.921	ENSMLEG00000030176	SETD1A	100	88.863	Mandrillus_leucophaeus
ENSRNOG00000055028	Setd1a	100	89.733	ENSMICG00000001575	SETD1A	100	89.965	Microcebus_murinus
ENSRNOG00000055028	Setd1a	100	95.647	ENSMOCG00000012528	-	100	95.647	Microtus_ochrogaster
ENSRNOG00000055028	Setd1a	100	86.269	ENSPPRG00000012737	SETD1A	100	85.458	Panthera_pardus
ENSRNOG00000055028	Setd1a	100	88.174	ENSPTRG00000008024	SETD1A	100	88.934	Pan_troglodytes
ENSRNOG00000055028	Setd1a	100	88.979	ENSPANG00000025141	SETD1A	100	88.805	Papio_anubis
ENSRNOG00000055028	Setd1a	52	69.408	ENSPKIG00000023115	setd1ba	57	69.637	Paramormyrops_kingsleyae
ENSRNOG00000055028	Setd1a	100	95.758	ENSPEMG00000024243	-	100	97.166	Peromyscus_maniculatus_bairdii
ENSRNOG00000055028	Setd1a	100	88.979	ENSPCOG00000020896	SETD1A	100	89.675	Propithecus_coquereli
ENSRNOG00000055028	Setd1a	100	87.623	ENSSBOG00000020392	SETD1A	100	88.490	Saimiri_boliviensis_boliviensis
ENSRNOG00000055028	Setd1a	54	70.358	ENSSSCG00000009806	SETD1B	66	70.530	Sus_scrofa
ENSRNOG00000055028	Setd1a	63	69.608	ENSTNIG00000009090	setd1ba	53	69.608	Tetraodon_nigroviridis
ENSRNOG00000055028	Setd1a	100	89.785	ENSTTRG00000015493	SETD1A	100	89.379	Tursiops_truncatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000790	nuclear chromatin	-	IEA	Component
GO:0000790	nuclear chromatin	-	ISO	Component
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005719	nuclear euchromatin	-	ISO	Component
GO:0008013	beta-catenin binding	-	IEA	Function
GO:0008013	beta-catenin binding	-	ISO	Function
GO:0008134	transcription factor binding	-	IEA	Function
GO:0008134	transcription factor binding	-	ISO	Function
GO:0010628	positive regulation of gene expression	-	ISO	Process
GO:0016607	nuclear speck	-	IEA	Component
GO:0016607	nuclear speck	-	ISO	Component
GO:0019827	stem cell population maintenance	-	ISO	Process
GO:0035097	histone methyltransferase complex	-	ISO	Component
GO:0042800	histone methyltransferase activity (H3-K4 specific)	-	IEA	Function
GO:0042800	histone methyltransferase activity (H3-K4 specific)	-	ISO	Function
GO:0045646	regulation of erythrocyte differentiation	-	ISO	Process
GO:0048188	Set1C/COMPASS complex	-	IEA	Component
GO:0048188	Set1C/COMPASS complex	-	ISO	Component
GO:0051568	histone H3-K4 methylation	-	IEA	Process
GO:0051568	histone H3-K4 methylation	-	ISO	Process
GO:1902036	regulation of hematopoietic stem cell differentiation	-	IEA	Process
GO:1902036	regulation of hematopoietic stem cell differentiation	-	ISO	Process
GO:1902275	regulation of chromatin organization	-	IEA	Process
GO:1902275	regulation of chromatin organization	-	ISO	Process
GO:1990188	euchromatin binding	-	ISO	Function
GO:2000179	positive regulation of neural precursor cell proliferation	-	ISO	Process
GO:2000648	positive regulation of stem cell proliferation	-	ISO	Process