EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000055292 (Gene tree)
Gene ID: 679087
Gene Symbol: LOC679087
Alias: LOC100911641
Full Name: similar to swan
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 2629 bases
Position: chr5:25725683-25728311
Accession: 1593040
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000070736	RRM_1	PF00076.22	1.7e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000087602	-	2629	XM_008763580	ENSRNOP00000070736	746 (aa)	XP_008761802	A0A0G2JYP3

Gene Model

Click here to download ENSRNOG00000055292's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000055292's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000055292	LOC679087	100	100.000	ENSRNOG00000016330	Rbm12b	88	100.000
ENSRNOG00000055292	LOC679087	55	37.349	ENSRNOG00000003399	Hnrnph1	78	37.349
ENSRNOG00000055292	LOC679087	50	37.349	ENSRNOG00000011661	Hnrnph2	78	36.047

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000055292	LOC679087	100	71.229	ENSG00000183808	RBM12B	100	92.683	Homo_sapiens
ENSRNOG00000055292	LOC679087	63	30.143	ENSAPOG00000008836	zgc:153215	95	30.143	Acanthochromis_polyacanthus
ENSRNOG00000055292	LOC679087	65	38.788	ENSAPOG00000013963	rbm12b	74	38.788	Acanthochromis_polyacanthus
ENSRNOG00000055292	LOC679087	100	72.346	ENSAMEG00000007134	RBM12B	89	72.346	Ailuropoda_melanoleuca
ENSRNOG00000055292	LOC679087	63	41.176	ENSACIG00000014943	rbm12b	98	40.557	Amphilophus_citrinellus
ENSRNOG00000055292	LOC679087	65	41.331	ENSAOCG00000024270	rbm12b	74	41.331	Amphiprion_ocellaris
ENSRNOG00000055292	LOC679087	65	45.228	ENSAPEG00000022079	rbm12b	99	42.073	Amphiprion_percula
ENSRNOG00000055292	LOC679087	55	47.500	ENSATEG00000001886	zgc:153215	75	47.500	Anabas_testudineus
ENSRNOG00000055292	LOC679087	65	42.915	ENSATEG00000004578	rbm12b	73	43.347	Anabas_testudineus
ENSRNOG00000055292	LOC679087	77	51.429	ENSAPLG00000002020	RBM12B	83	53.266	Anas_platyrhynchos
ENSRNOG00000055292	LOC679087	68	43.954	ENSACAG00000003463	RBM12B	51	43.954	Anolis_carolinensis
ENSRNOG00000055292	LOC679087	100	73.123	ENSANAG00000034015	RBM12B	96	71.370	Aotus_nancymaae
ENSRNOG00000055292	LOC679087	65	40.081	ENSACLG00000005575	rbm12b	72	40.081	Astatotilapia_calliptera
ENSRNOG00000055292	LOC679087	59	38.750	ENSACLG00000005578	rbm12b	58	38.750	Astatotilapia_calliptera
ENSRNOG00000055292	LOC679087	65	39.034	ENSAMXG00000041973	rbm12b	74	41.600	Astyanax_mexicanus
ENSRNOG00000055292	LOC679087	56	53.488	ENSAMXG00000020853	zgc:153215	68	53.488	Astyanax_mexicanus
ENSRNOG00000055292	LOC679087	100	70.194	ENSBTAG00000013408	RBM12B	89	70.194	Bos_taurus
ENSRNOG00000055292	LOC679087	100	61.641	ENSCAFG00000009109	RBM12B	90	70.365	Canis_familiaris
ENSRNOG00000055292	LOC679087	100	70.588	ENSCAFG00020012203	RBM12B	89	70.077	Canis_lupus_dingo
ENSRNOG00000055292	LOC679087	87	72.811	ENSCHIG00000006790	RBM12B	88	72.811	Capra_hircus
ENSRNOG00000055292	LOC679087	100	69.669	ENSTSYG00000012515	RBM12B	90	69.669	Carlito_syrichta
ENSRNOG00000055292	LOC679087	100	65.698	ENSCAPG00000003543	RBM12B	90	69.108	Cavia_aperea
ENSRNOG00000055292	LOC679087	100	65.698	ENSCPOG00000007815	RBM12B	90	69.108	Cavia_porcellus
ENSRNOG00000055292	LOC679087	100	71.558	ENSCATG00000030769	RBM12B	89	67.677	Cercocebus_atys
ENSRNOG00000055292	LOC679087	100	66.628	ENSCLAG00000017617	RBM12B	90	69.908	Chinchilla_lanigera
ENSRNOG00000055292	LOC679087	100	71.060	ENSCSAG00000018559	RBM12B	90	71.060	Chlorocebus_sabaeus
ENSRNOG00000055292	LOC679087	100	63.333	ENSCHOG00000008934	RBM12B	91	69.932	Choloepus_hoffmanni
ENSRNOG00000055292	LOC679087	76	53.821	ENSCPBG00000003061	RBM12B	83	53.821	Chrysemys_picta_bellii
ENSRNOG00000055292	LOC679087	100	71.206	ENSCANG00000030379	RBM12B	89	69.716	Colobus_angolensis_palliatus
ENSRNOG00000055292	LOC679087	100	80.000	ENSCGRG00001008710	-	86	80.000	Cricetulus_griseus_chok1gshd
ENSRNOG00000055292	LOC679087	68	40.535	ENSCSEG00000004610	rbm12b	74	40.535	Cynoglossus_semilaevis
ENSRNOG00000055292	LOC679087	65	41.365	ENSCVAG00000011047	rbm12b	74	41.616	Cyprinodon_variegatus
ENSRNOG00000055292	LOC679087	65	40.121	ENSDARG00000079717	rbm12b	70	41.317	Danio_rerio
ENSRNOG00000055292	LOC679087	100	70.516	ENSDNOG00000041608	RBM12B	90	70.828	Dasypus_novemcinctus
ENSRNOG00000055292	LOC679087	100	65.166	ENSDORG00000024034	-	90	63.981	Dipodomys_ordii
ENSRNOG00000055292	LOC679087	81	64.992	ENSETEG00000013005	-	86	64.198	Echinops_telfairi
ENSRNOG00000055292	LOC679087	61	30.952	ENSEBUG00000009015	-	71	30.952	Eptatretus_burgeri
ENSRNOG00000055292	LOC679087	100	71.648	ENSEASG00005016297	RBM12B	89	71.648	Equus_asinus_asinus
ENSRNOG00000055292	LOC679087	100	62.061	ENSECAG00000017870	RBM12B	90	71.074	Equus_caballus
ENSRNOG00000055292	LOC679087	100	72.374	ENSFCAG00000029274	RBM12B	89	72.374	Felis_catus
ENSRNOG00000055292	LOC679087	77	49.916	ENSFALG00000014893	RBM12B	83	50.167	Ficedula_albicollis
ENSRNOG00000055292	LOC679087	100	66.002	ENSFDAG00000005576	RBM12B	87	67.738	Fukomys_damarensis
ENSRNOG00000055292	LOC679087	65	38.008	ENSFHEG00000016425	rbm12b	73	38.211	Fundulus_heteroclitus
ENSRNOG00000055292	LOC679087	68	42.085	ENSGMOG00000013467	rbm12b	78	42.085	Gadus_morhua
ENSRNOG00000055292	LOC679087	77	52.333	ENSGALG00000035129	RBM12B	83	52.755	Gallus_gallus
ENSRNOG00000055292	LOC679087	65	39.431	ENSGAFG00000007224	rbm12b	74	39.837	Gambusia_affinis
ENSRNOG00000055292	LOC679087	64	31.619	ENSGAFG00000007845	zgc:153215	98	31.619	Gambusia_affinis
ENSRNOG00000055292	LOC679087	65	39.228	ENSGACG00000008682	rbm12b	73	39.228	Gasterosteus_aculeatus
ENSRNOG00000055292	LOC679087	77	53.038	ENSGAGG00000009774	RBM12B	85	53.038	Gopherus_agassizii
ENSRNOG00000055292	LOC679087	100	72.542	ENSGGOG00000011909	RBM12B	89	72.414	Gorilla_gorilla
ENSRNOG00000055292	LOC679087	69	37.944	ENSHBUG00000016227	rbm12b	76	37.944	Haplochromis_burtoni
ENSRNOG00000055292	LOC679087	100	65.478	ENSHGLG00000009063	RBM12B	80	68.082	Heterocephalus_glaber_female
ENSRNOG00000055292	LOC679087	100	65.478	ENSHGLG00100021324	RBM12B	80	68.082	Heterocephalus_glaber_male
ENSRNOG00000055292	LOC679087	65	37.398	ENSHCOG00000014952	rbm12b	77	37.398	Hippocampus_comes
ENSRNOG00000055292	LOC679087	65	30.601	ENSIPUG00000019731	zgc:153215	99	30.601	Ictalurus_punctatus
ENSRNOG00000055292	LOC679087	76	37.374	ENSIPUG00000001167	RBM12B	84	37.374	Ictalurus_punctatus
ENSRNOG00000055292	LOC679087	100	74.738	ENSSTOG00000027445	RBM12B	88	74.738	Ictidomys_tridecemlineatus
ENSRNOG00000055292	LOC679087	100	70.685	ENSJJAG00000004165	-	89	70.558	Jaculus_jaculus
ENSRNOG00000055292	LOC679087	65	39.448	ENSKMAG00000013704	rbm12b	71	39.335	Kryptolebias_marmoratus
ENSRNOG00000055292	LOC679087	65	39.044	ENSKMAG00000013715	rbm12b	74	38.748	Kryptolebias_marmoratus
ENSRNOG00000055292	LOC679087	65	30.040	ENSKMAG00000004958	zgc:153215	99	30.040	Kryptolebias_marmoratus
ENSRNOG00000055292	LOC679087	68	48.727	ENSLACG00000007177	RBM12B	78	49.177	Latimeria_chalumnae
ENSRNOG00000055292	LOC679087	65	45.793	ENSLOCG00000018344	rbm12b	75	46.184	Lepisosteus_oculatus
ENSRNOG00000055292	LOC679087	100	68.750	ENSLAFG00000029949	RBM12B	88	69.149	Loxodonta_africana
ENSRNOG00000055292	LOC679087	100	71.336	ENSMFAG00000045430	RBM12B	89	69.884	Macaca_fascicularis
ENSRNOG00000055292	LOC679087	100	71.356	ENSMMUG00000005558	RBM12B	90	71.060	Macaca_mulatta
ENSRNOG00000055292	LOC679087	100	71.336	ENSMNEG00000041292	RBM12B	89	69.884	Macaca_nemestrina
ENSRNOG00000055292	LOC679087	100	71.392	ENSMLEG00000037288	RBM12B	89	71.772	Mandrillus_leucophaeus
ENSRNOG00000055292	LOC679087	65	30.151	ENSMAMG00000012038	zgc:153215	94	30.151	Mastacembelus_armatus
ENSRNOG00000055292	LOC679087	65	42.442	ENSMAMG00000011998	rbm12b	74	42.412	Mastacembelus_armatus
ENSRNOG00000055292	LOC679087	65	40.244	ENSMZEG00005015005	rbm12b	74	40.244	Maylandia_zebra
ENSRNOG00000055292	LOC679087	65	37.398	ENSMZEG00005014845	rbm12b	73	37.398	Maylandia_zebra
ENSRNOG00000055292	LOC679087	65	57.004	ENSMGAG00000011985	RBM12B	99	57.393	Meleagris_gallopavo
ENSRNOG00000055292	LOC679087	100	79.973	ENSMAUG00000021752	-	88	79.973	Mesocricetus_auratus
ENSRNOG00000055292	LOC679087	100	72.751	ENSMICG00000036969	RBM12B	89	72.288	Microcebus_murinus
ENSRNOG00000055292	LOC679087	100	76.424	ENSMOCG00000005603	-	88	76.424	Microtus_ochrogaster
ENSRNOG00000055292	LOC679087	65	64.634	ENSMMOG00000002404	rbm12b	73	64.634	Mola_mola
ENSRNOG00000055292	LOC679087	65	30.719	ENSMMOG00000003372	zgc:153215	99	30.719	Mola_mola
ENSRNOG00000055292	LOC679087	98	59.356	ENSMODG00000007436	RBM12B	82	59.663	Monodelphis_domestica
ENSRNOG00000055292	LOC679087	65	30.101	ENSMALG00000001222	zgc:153215	98	30.101	Monopterus_albus
ENSRNOG00000055292	LOC679087	68	39.652	ENSMALG00000012059	rbm12b	76	39.652	Monopterus_albus
ENSRNOG00000055292	LOC679087	100	86.863	ENSMUSG00000046667	Rbm12b1	88	86.863	Mus_musculus
ENSRNOG00000055292	LOC679087	99	86.309	ENSMUSG00000052137	Rbm12b2	88	86.309	Mus_musculus
ENSRNOG00000055292	LOC679087	100	77.791	MGP_SPRETEiJ_G0026765	-	89	76.606	Mus_spretus
ENSRNOG00000055292	LOC679087	100	86.595	MGP_SPRETEiJ_G0026766	-	88	86.595	Mus_spretus
ENSRNOG00000055292	LOC679087	100	61.276	ENSMPUG00000018637	RBM12B	90	71.488	Mustela_putorius_furo
ENSRNOG00000055292	LOC679087	100	61.932	ENSMLUG00000002359	RBM12B	90	66.845	Myotis_lucifugus
ENSRNOG00000055292	LOC679087	100	70.863	ENSNGAG00000002801	-	90	68.465	Nannospalax_galili
ENSRNOG00000055292	LOC679087	65	40.688	ENSNBRG00000015057	rbm12b	74	40.688	Neolamprologus_brichardi
ENSRNOG00000055292	LOC679087	100	71.465	ENSNLEG00000032050	RBM12B	89	71.465	Nomascus_leucogenys
ENSRNOG00000055292	LOC679087	100	65.076	ENSODEG00000019204	RBM12B	90	68.176	Octodon_degus
ENSRNOG00000055292	LOC679087	65	40.447	ENSONIG00000020612	rbm12b	74	40.447	Oreochromis_niloticus
ENSRNOG00000055292	LOC679087	77	54.576	ENSOANG00000015735	-	80	55.877	Ornithorhynchus_anatinus
ENSRNOG00000055292	LOC679087	100	72.436	ENSOCUG00000010353	RBM12B	89	72.436	Oryctolagus_cuniculus
ENSRNOG00000055292	LOC679087	65	38.264	ENSORLG00000008228	rbm12b	71	38.264	Oryzias_latipes
ENSRNOG00000055292	LOC679087	65	38.000	ENSORLG00020013619	rbm12b	71	38.000	Oryzias_latipes_hni
ENSRNOG00000055292	LOC679087	65	38.000	ENSORLG00015019999	rbm12b	71	38.000	Oryzias_latipes_hsok
ENSRNOG00000055292	LOC679087	65	39.250	ENSOMEG00000022523	rbm12b	71	39.250	Oryzias_melastigma
ENSRNOG00000055292	LOC679087	100	61.633	ENSOGAG00000002979	RBM12B	90	71.056	Otolemur_garnettii
ENSRNOG00000055292	LOC679087	100	71.835	ENSPTIG00000020071	RBM12B	89	70.881	Panthera_tigris_altaica
ENSRNOG00000055292	LOC679087	100	71.483	ENSPTRG00000020420	RBM12B	99	71.117	Pan_troglodytes
ENSRNOG00000055292	LOC679087	100	70.886	ENSPANG00000035535	RBM12B	89	71.646	Papio_anubis
ENSRNOG00000055292	LOC679087	65	43.347	ENSPKIG00000018719	rbm12b	73	43.347	Paramormyrops_kingsleyae
ENSRNOG00000055292	LOC679087	64	33.205	ENSPKIG00000014851	zgc:153215	98	33.205	Paramormyrops_kingsleyae
ENSRNOG00000055292	LOC679087	77	53.411	ENSPSIG00000001348	RBM12B	84	53.411	Pelodiscus_sinensis
ENSRNOG00000055292	LOC679087	100	80.265	ENSPEMG00000008279	-	88	80.265	Peromyscus_maniculatus_bairdii
ENSRNOG00000055292	LOC679087	98	60.031	ENSPCIG00000008556	RBM12B	87	60.490	Phascolarctos_cinereus
ENSRNOG00000055292	LOC679087	65	39.554	ENSPFOG00000020937	rbm12b	71	40.779	Poecilia_formosa
ENSRNOG00000055292	LOC679087	60	42.857	ENSPFOG00000017451	zgc:153215	70	42.857	Poecilia_formosa
ENSRNOG00000055292	LOC679087	65	39.959	ENSPLAG00000018782	rbm12b	74	41.189	Poecilia_latipinna
ENSRNOG00000055292	LOC679087	65	39.959	ENSPMEG00000011418	rbm12b	74	40.562	Poecilia_mexicana
ENSRNOG00000055292	LOC679087	65	39.839	ENSPREG00000020770	rbm12b	74	40.771	Poecilia_reticulata
ENSRNOG00000055292	LOC679087	65	30.077	ENSPREG00000018608	zgc:153215	99	30.077	Poecilia_reticulata
ENSRNOG00000055292	LOC679087	100	70.788	ENSPPYG00000018745	RBM12B	90	70.788	Pongo_abelii
ENSRNOG00000055292	LOC679087	100	72.692	ENSPCOG00000023546	RBM12B	89	72.692	Propithecus_coquereli
ENSRNOG00000055292	LOC679087	100	65.711	ENSPVAG00000011803	RBM12B	90	64.277	Pteropus_vampyrus
ENSRNOG00000055292	LOC679087	65	39.173	ENSPNYG00000016696	rbm12b	74	39.173	Pundamilia_nyererei
ENSRNOG00000055292	LOC679087	65	31.227	ENSPNAG00000025628	zgc:153215	99	31.227	Pygocentrus_nattereri
ENSRNOG00000055292	LOC679087	65	38.476	ENSPNAG00000008126	rbm12b	72	41.468	Pygocentrus_nattereri
ENSRNOG00000055292	LOC679087	100	72.370	ENSRBIG00000035046	RBM12B	89	71.229	Rhinopithecus_bieti
ENSRNOG00000055292	LOC679087	100	71.916	ENSRROG00000023660	RBM12B	88	71.916	Rhinopithecus_roxellana
ENSRNOG00000055292	LOC679087	100	70.796	ENSSBOG00000027592	RBM12B	89	70.923	Saimiri_boliviensis_boliviensis
ENSRNOG00000055292	LOC679087	98	59.509	ENSSHAG00000015335	RBM12B	84	59.969	Sarcophilus_harrisii
ENSRNOG00000055292	LOC679087	65	42.315	ENSSFOG00015001584	rbm12b	74	42.315	Scleropages_formosus
ENSRNOG00000055292	LOC679087	65	33.992	ENSSFOG00015009427	zgc:153215	99	33.992	Scleropages_formosus
ENSRNOG00000055292	LOC679087	65	42.742	ENSSMAG00000019708	rbm12b	74	42.742	Scophthalmus_maximus
ENSRNOG00000055292	LOC679087	65	42.330	ENSSDUG00000006856	rbm12b	74	42.330	Seriola_dumerili
ENSRNOG00000055292	LOC679087	56	48.750	ENSSLDG00000013581	zgc:153215	81	41.667	Seriola_lalandi_dorsalis
ENSRNOG00000055292	LOC679087	65	42.330	ENSSLDG00000016156	rbm12b	74	42.330	Seriola_lalandi_dorsalis
ENSRNOG00000055292	LOC679087	82	69.741	ENSSARG00000011845	-	84	69.741	Sorex_araneus
ENSRNOG00000055292	LOC679087	65	52.124	ENSSPUG00000016954	RBM12B	91	52.783	Sphenodon_punctatus
ENSRNOG00000055292	LOC679087	65	39.484	ENSSPAG00000006774	rbm12b	74	39.484	Stegastes_partitus
ENSRNOG00000055292	LOC679087	95	70.765	ENSSSCG00000006110	RBM12B	99	70.765	Sus_scrofa
ENSRNOG00000055292	LOC679087	68	53.965	ENSTGUG00000011860	RBM12B	100	53.965	Taeniopygia_guttata
ENSRNOG00000055292	LOC679087	65	40.900	ENSTRUG00000013738	rbm12b	74	40.900	Takifugu_rubripes
ENSRNOG00000055292	LOC679087	84	72.473	ENSTBEG00000000449	RBM12B	82	72.473	Tupaia_belangeri
ENSRNOG00000055292	LOC679087	100	69.785	ENSUAMG00000023639	RBM12B	89	68.142	Ursus_americanus
ENSRNOG00000055292	LOC679087	100	66.747	ENSUMAG00000016008	RBM12B	89	66.145	Ursus_maritimus
ENSRNOG00000055292	LOC679087	87	82.877	ENSVPAG00000001080	RBM12B	82	82.877	Vicugna_pacos
ENSRNOG00000055292	LOC679087	100	70.972	ENSVVUG00000002694	RBM12B	89	70.844	Vulpes_vulpes
ENSRNOG00000055292	LOC679087	66	30.041	ENSXETG00000025920	-	97	30.041	Xenopus_tropicalis
ENSRNOG00000055292	LOC679087	66	37.952	ENSXETG00000014696	rbm12b	69	37.952	Xenopus_tropicalis
ENSRNOG00000055292	LOC679087	65	46.918	ENSXETG00000014694	rbm12b	100	46.748	Xenopus_tropicalis
ENSRNOG00000055292	LOC679087	61	40.184	ENSXCOG00000019735	-	99	40.491	Xiphophorus_couchianus
ENSRNOG00000055292	LOC679087	65	31.226	ENSXCOG00000019654	zgc:153215	98	31.226	Xiphophorus_couchianus
ENSRNOG00000055292	LOC679087	53	46.835	ENSXMAG00000013169	-	93	46.835	Xiphophorus_maculatus
ENSRNOG00000055292	LOC679087	65	40.244	ENSXMAG00000014213	rbm12b	74	40.447	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function