EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000055562 (Gene tree)
Gene ID
170944
Gene Symbol
Dkc1
Alias
Nap57
Full Name
dyskerin pseudouridine synthase 1
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Minus strand
Length
17619 bases
Position
chrX:155844857-155862475
Accession
621780
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000074005TruB_NPF01509.181.1e-2111
ENSRNOP00000074005PUAPF01472.202.8e-1811
ENSRNOP00000074005DKCLDPF08068.122.1e-2811
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000079862-1974--- (aa)--
ENSRNOT00000089847-1803XM_008773596ENSRNOP00000074005509 (aa)-A0A0G2K700
Gene Model
Click here to download ENSRNOG00000055562's gene model file
Pathways
Pathway IDPathway NameSource
rno03008Ribosome biogenesis in eukaryotesKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000055562's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000055562Dkc19782.294ENSG00000130826DKC19989.756Homo_sapiens
ENSRNOG00000055562Dkc18677.045ENSAPOG00000007799dkc18875.107Acanthochromis_polyacanthus
ENSRNOG00000055562Dkc19084.783ENSAMEG00000002776DKC19681.377Ailuropoda_melanoleuca
ENSRNOG00000055562Dkc18875.501ENSACIG00000022614dkc18978.140Amphilophus_citrinellus
ENSRNOG00000055562Dkc18875.670ENSAOCG00000013159dkc19374.522Amphiprion_ocellaris
ENSRNOG00000055562Dkc18875.446ENSAPEG00000002284dkc19374.145Amphiprion_percula
ENSRNOG00000055562Dkc17981.127ENSATEG00000013682dkc18081.127Anabas_testudineus
ENSRNOG00000055562Dkc19376.289ENSACAG00000015600DKC18375.514Anolis_carolinensis
ENSRNOG00000055562Dkc19681.818ENSANAG00000022732DKC19681.855Aotus_nancymaae
ENSRNOG00000055562Dkc17882.872ENSACLG00000015605dkc18182.872Astatotilapia_calliptera
ENSRNOG00000055562Dkc18677.602ENSAMXG00000017108dkc18377.602Astyanax_mexicanus
ENSRNOG00000055562Dkc19184.665ENSBTAG00000013045DKC19681.744Bos_taurus
ENSRNOG00000055562Dkc18064.706WBGene00010478K01G5.59762.156Caenorhabditis_elegans
ENSRNOG00000055562Dkc19782.495ENSCJAG00000004210DKC19682.495Callithrix_jacchus
ENSRNOG00000055562Dkc18575.455ENSCAFG00000009311-8675.455Canis_familiaris
ENSRNOG00000055562Dkc19979.961ENSCAFG00000019620-9780.517Canis_familiaris
ENSRNOG00000055562Dkc19979.961ENSCAFG00020008918-9780.517Canis_lupus_dingo
ENSRNOG00000055562Dkc18575.000ENSCAFG00020009379-8275.000Canis_lupus_dingo
ENSRNOG00000055562Dkc19184.665ENSCHIG00000017392DKC19781.818Capra_hircus
ENSRNOG00000055562Dkc19681.673ENSTSYG00000007681DKC19581.673Carlito_syrichta
ENSRNOG00000055562Dkc18086.241ENSCAPG00000003342DKC19983.028Cavia_aperea
ENSRNOG00000055562Dkc19782.258ENSCPOG00000008825DKC19682.495Cavia_porcellus
ENSRNOG00000055562Dkc19774.245ENSCCAG00000027418DKC19674.245Cebus_capucinus
ENSRNOG00000055562Dkc19781.489ENSCATG00000033602DKC19681.452Cercocebus_atys
ENSRNOG00000055562Dkc19582.209ENSCLAG00000000720DKC19682.449Chinchilla_lanigera
ENSRNOG00000055562Dkc19781.690ENSCSAG00000006706DKC19681.653Chlorocebus_sabaeus
ENSRNOG00000055562Dkc19875.299ENSCPBG00000005858DKC19481.798Chrysemys_picta_bellii
ENSRNOG00000055562Dkc19367.158ENSCING00000004599-9267.975Ciona_intestinalis
ENSRNOG00000055562Dkc18371.132ENSCSAVG00000010047-8875.253Ciona_savignyi
ENSRNOG00000055562Dkc19781.690ENSCANG00000027987DKC19681.653Colobus_angolensis_palliatus
ENSRNOG00000055562Dkc19981.238ENSCGRG00001014574-9981.238Cricetulus_griseus_chok1gshd
ENSRNOG00000055562Dkc19160.691ENSCGRG00001016789-9460.722Cricetulus_griseus_chok1gshd
ENSRNOG00000055562Dkc19981.238ENSCGRG00000016075-9981.238Cricetulus_griseus_crigri
ENSRNOG00000055562Dkc19959.208ENSCGRG00000014809-9260.722Cricetulus_griseus_crigri
ENSRNOG00000055562Dkc19273.109ENSCSEG00000012633dkc19574.627Cynoglossus_semilaevis
ENSRNOG00000055562Dkc18776.975ENSCVAG00000010155dkc18477.427Cyprinodon_variegatus
ENSRNOG00000055562Dkc18478.140ENSDARG00000016484dkc18477.169Danio_rerio
ENSRNOG00000055562Dkc19184.416ENSDNOG00000004218DKC19084.416Dasypus_novemcinctus
ENSRNOG00000055562Dkc15975.828ENSDORG00000013566-10075.828Dipodomys_ordii
ENSRNOG00000055562Dkc18270.264FBgn0259937Nop60B9064.878Drosophila_melanogaster
ENSRNOG00000055562Dkc18780.269ENSETEG00000016095DKC19080.269Echinops_telfairi
ENSRNOG00000055562Dkc16673.669ENSEBUG00000015962dkc19978.425Eptatretus_burgeri
ENSRNOG00000055562Dkc19780.517ENSEASG00005007484DKC19680.517Equus_asinus_asinus
ENSRNOG00000055562Dkc19780.517ENSECAG00000023524DKC19680.517Equus_caballus
ENSRNOG00000055562Dkc18385.412ENSEEUG00000003323DKC19985.412Erinaceus_europaeus
ENSRNOG00000055562Dkc18776.906ENSELUG00000014538dkc18678.555Esox_lucius
ENSRNOG00000055562Dkc19782.150ENSFCAG00000006577DKC19681.781Felis_catus
ENSRNOG00000055562Dkc18680.225ENSFALG00000011496DKC19077.778Ficedula_albicollis
ENSRNOG00000055562Dkc19581.837ENSFDAG00000002516DKC19682.004Fukomys_damarensis
ENSRNOG00000055562Dkc18677.626ENSFHEG00000004627dkc18975.269Fundulus_heteroclitus
ENSRNOG00000055562Dkc17780.307ENSGMOG00000017277dkc110080.307Gadus_morhua
ENSRNOG00000055562Dkc18581.881ENSGALG00000005054DKC19178.059Gallus_gallus
ENSRNOG00000055562Dkc18678.539ENSGAFG00000011486dkc17378.311Gambusia_affinis
ENSRNOG00000055562Dkc17882.116ENSGACG00000004373dkc19686.018Gasterosteus_aculeatus
ENSRNOG00000055562Dkc18980.220ENSGAGG00000011330DKC18781.304Gopherus_agassizii
ENSRNOG00000055562Dkc19782.294ENSGGOG00000001045DKC19682.258Gorilla_gorilla
ENSRNOG00000055562Dkc19175.107ENSHBUG00000012436dkc18975.536Haplochromis_burtoni
ENSRNOG00000055562Dkc18885.588ENSHGLG00000000649DKC19582.077Heterocephalus_glaber_female
ENSRNOG00000055562Dkc18785.811ENSHGLG00100001153DKC19582.231Heterocephalus_glaber_male
ENSRNOG00000055562Dkc18676.941ENSHCOG00000021099dkc18577.854Hippocampus_comes
ENSRNOG00000055562Dkc19175.647ENSIPUG00000010309dkc19771.457Ictalurus_punctatus
ENSRNOG00000055562Dkc19273.629ENSSTOG00000020149-9672.819Ictidomys_tridecemlineatus
ENSRNOG00000055562Dkc19184.665ENSSTOG00000001074-9584.665Ictidomys_tridecemlineatus
ENSRNOG00000055562Dkc19770.482ENSSTOG00000011904-9370.482Ictidomys_tridecemlineatus
ENSRNOG00000055562Dkc15976.490ENSJJAG00000010086-10076.490Jaculus_jaculus
ENSRNOG00000055562Dkc19470.637ENSKMAG00000008010dkc19571.458Kryptolebias_marmoratus
ENSRNOG00000055562Dkc18676.136ENSLBEG00000019122dkc18975.676Labrus_bergylta
ENSRNOG00000055562Dkc19276.667ENSLACG00000014025DKC19185.965Latimeria_chalumnae
ENSRNOG00000055562Dkc18778.876ENSLOCG00000013713dkc18880.324Lepisosteus_oculatus
ENSRNOG00000055562Dkc18784.081ENSLAFG00000000221DKC19680.488Loxodonta_africana
ENSRNOG00000055562Dkc19781.891ENSMFAG00000032398DKC18381.855Macaca_fascicularis
ENSRNOG00000055562Dkc19781.690ENSMMUG00000005768DKC19681.653Macaca_mulatta
ENSRNOG00000055562Dkc19781.690ENSMNEG00000034503DKC19681.653Macaca_nemestrina
ENSRNOG00000055562Dkc19781.690ENSMLEG00000034422DKC19681.653Mandrillus_leucophaeus
ENSRNOG00000055562Dkc18180.779ENSMAMG00000005427dkc19081.931Mastacembelus_armatus
ENSRNOG00000055562Dkc19175.322ENSMZEG00005014503dkc18975.751Maylandia_zebra
ENSRNOG00000055562Dkc17882.872ENSMGAG00000009238DKC18781.572Meleagris_gallopavo
ENSRNOG00000055562Dkc15977.483ENSMAUG00000016454-10077.483Mesocricetus_auratus
ENSRNOG00000055562Dkc19778.571ENSMICG00000038751-9679.513Microcebus_murinus
ENSRNOG00000055562Dkc18573.409ENSMICG00000002818-9978.022Microcebus_murinus
ENSRNOG00000055562Dkc15974.834ENSMOCG00000001169-10074.834Microtus_ochrogaster
ENSRNOG00000055562Dkc18379.147ENSMMOG00000020348dkc19279.147Mola_mola
ENSRNOG00000055562Dkc17985.644ENSMODG00000009243DKC16986.250Monodelphis_domestica
ENSRNOG00000055562Dkc18676.591ENSMALG00000009454dkc18476.591Monopterus_albus
ENSRNOG00000055562Dkc19973.423MGP_CAROLIEiJ_G0033191Dkc110088.000Mus_caroli
ENSRNOG00000055562Dkc19982.101ENSMUSG00000031403Dkc19982.101Mus_musculus
ENSRNOG00000055562Dkc19982.524MGP_PahariEiJ_G0031735Dkc110082.330Mus_pahari
ENSRNOG00000055562Dkc19982.136MGP_SPRETEiJ_G0034351Dkc19982.136Mus_spretus
ENSRNOG00000055562Dkc19182.627ENSMPUG00000016136DKC19279.722Mustela_putorius_furo
ENSRNOG00000055562Dkc19180.128ENSMLUG00000011918DKC19775.882Myotis_lucifugus
ENSRNOG00000055562Dkc15976.159ENSNGAG00000015724-10076.159Nannospalax_galili
ENSRNOG00000055562Dkc17882.872ENSNBRG00000005638dkc18082.872Neolamprologus_brichardi
ENSRNOG00000055562Dkc19782.495ENSNLEG00000014323DKC19682.460Nomascus_leucogenys
ENSRNOG00000055562Dkc18180.872ENSMEUG00000001066DKC18981.174Notamacropus_eugenii
ENSRNOG00000055562Dkc17282.787ENSOPRG00000005248DKC17382.787Ochotona_princeps
ENSRNOG00000055562Dkc18686.728ENSODEG00000011816-9084.416Octodon_degus
ENSRNOG00000055562Dkc15976.490ENSODEG00000000549-10076.490Octodon_degus
ENSRNOG00000055562Dkc18777.703ENSONIG00000013889dkc18677.703Oreochromis_niloticus
ENSRNOG00000055562Dkc18483.683ENSOANG00000008713-8983.180Ornithorhynchus_anatinus
ENSRNOG00000055562Dkc15760.535ENSOANG00000022295-8560.328Ornithorhynchus_anatinus
ENSRNOG00000055562Dkc19782.353ENSOCUG00000012646DKC19682.353Oryctolagus_cuniculus
ENSRNOG00000055562Dkc18576.322ENSORLG00000018748dkc18475.973Oryzias_latipes
ENSRNOG00000055562Dkc18677.273ENSOMEG00000005786dkc18182.773Oryzias_melastigma
ENSRNOG00000055562Dkc19779.256ENSOGAG00000003399DKC19978.887Otolemur_garnettii
ENSRNOG00000055562Dkc18985.088ENSOARG00000003047DKC19682.172Ovis_aries
ENSRNOG00000055562Dkc19781.690ENSPPAG00000023820DKC19682.056Pan_paniscus
ENSRNOG00000055562Dkc19184.632ENSPPRG00000009104DKC19681.781Panthera_pardus
ENSRNOG00000055562Dkc18684.545ENSPTIG00000017469DKC19281.568Panthera_tigris_altaica
ENSRNOG00000055562Dkc19782.294ENSPTRG00000043416-8482.258Pan_troglodytes
ENSRNOG00000055562Dkc19782.294ENSPTRG00000022449DKC19682.258Pan_troglodytes
ENSRNOG00000055562Dkc19781.690ENSPANG00000011978DKC19681.653Papio_anubis
ENSRNOG00000055562Dkc18578.851ENSPKIG00000008443dkc18384.051Paramormyrops_kingsleyae
ENSRNOG00000055562Dkc17286.595ENSPSIG00000013765DKC18689.136Pelodiscus_sinensis
ENSRNOG00000055562Dkc18773.942ENSPMGG00000004097dkc18273.942Periophthalmus_magnuspinnatus
ENSRNOG00000055562Dkc19751.102ENSPEMG00000013348Dkc19650.898Peromyscus_maniculatus_bairdii
ENSRNOG00000055562Dkc18085.575ENSPCIG00000016706DKC17381.465Phascolarctos_cinereus
ENSRNOG00000055562Dkc18678.231ENSPFOG00000018653dkc18976.344Poecilia_formosa
ENSRNOG00000055562Dkc18678.458ENSPLAG00000003272dkc18076.344Poecilia_latipinna
ENSRNOG00000055562Dkc18678.458ENSPMEG00000010413dkc18976.344Poecilia_mexicana
ENSRNOG00000055562Dkc18677.778ENSPREG00000004100dkc18477.551Poecilia_reticulata
ENSRNOG00000055562Dkc19582.449ENSPPYG00000020892DKC19682.413Pongo_abelii
ENSRNOG00000055562Dkc17388.235ENSPCAG00000015034DKC17388.235Procavia_capensis
ENSRNOG00000055562Dkc19781.087ENSPCOG00000026874DKC19681.087Propithecus_coquereli
ENSRNOG00000055562Dkc110081.128ENSPVAG00000009222DKC110081.128Pteropus_vampyrus
ENSRNOG00000055562Dkc18775.839ENSPNYG00000020063dkc18875.839Pundamilia_nyererei
ENSRNOG00000055562Dkc19176.180ENSPNAG00000005780dkc18776.180Pygocentrus_nattereri
ENSRNOG00000055562Dkc19781.690ENSRBIG00000028457DKC18381.653Rhinopithecus_bieti
ENSRNOG00000055562Dkc19781.690ENSRROG00000044780DKC19681.653Rhinopithecus_roxellana
ENSRNOG00000055562Dkc17868.090YLR175W-9761.783Saccharomyces_cerevisiae
ENSRNOG00000055562Dkc19782.661ENSSBOG00000033746DKC19682.661Saimiri_boliviensis_boliviensis
ENSRNOG00000055562Dkc18681.549ENSSHAG00000002463DKC19480.942Sarcophilus_harrisii
ENSRNOG00000055562Dkc18778.125ENSSFOG00015009585dkc19076.596Scleropages_formosus
ENSRNOG00000055562Dkc18777.528ENSSMAG00000002552dkc19074.893Scophthalmus_maximus
ENSRNOG00000055562Dkc19176.119ENSSDUG00000009963dkc19574.395Seriola_dumerili
ENSRNOG00000055562Dkc19174.090ENSSLDG00000019342dkc19276.072Seriola_lalandi_dorsalis
ENSRNOG00000055562Dkc19280.042ENSSARG00000001822DKC19380.042Sorex_araneus
ENSRNOG00000055562Dkc18979.694ENSSPUG00000018907DKC18878.925Sphenodon_punctatus
ENSRNOG00000055562Dkc18776.018ENSSPAG00000002585dkc18176.018Stegastes_partitus
ENSRNOG00000055562Dkc19780.517ENSSSCG00000012823DKC19286.937Sus_scrofa
ENSRNOG00000055562Dkc17983.042ENSTGUG00000006781DKC19478.899Taeniopygia_guttata
ENSRNOG00000055562Dkc18677.500ENSTRUG00000004413dkc18677.500Takifugu_rubripes
ENSRNOG00000055562Dkc19459.356ENSTNIG00000002582dkc18662.054Tetraodon_nigroviridis
ENSRNOG00000055562Dkc15984.615ENSTBEG00000011262DKC19478.198Tupaia_belangeri
ENSRNOG00000055562Dkc15491.007ENSTTRG00000008089DKC15591.007Tursiops_truncatus
ENSRNOG00000055562Dkc18785.747ENSUAMG00000022721DKC18986.385Ursus_americanus
ENSRNOG00000055562Dkc18785.520ENSUMAG00000016899DKC19687.532Ursus_maritimus
ENSRNOG00000055562Dkc19565.914ENSVVUG00000021671-8668.043Vulpes_vulpes
ENSRNOG00000055562Dkc19878.998ENSVVUG00000020734-8679.523Vulpes_vulpes
ENSRNOG00000055562Dkc19574.897ENSXETG00000032517DKC18480.365Xenopus_tropicalis
ENSRNOG00000055562Dkc18677.376ENSXCOG00000005498dkc19277.376Xiphophorus_couchianus
ENSRNOG00000055562Dkc18678.231ENSXMAG00000004919dkc18678.231Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000454snoRNA guided rRNA pseudouridine synthesis12446766.IDAProcess
GO:0000455enzyme-directed rRNA pseudouridine synthesis-ISOProcess
GO:0000455enzyme-directed rRNA pseudouridine synthesis-ISSProcess
GO:0000495box H/ACA snoRNA 3'-end processing21873635.IBAProcess
GO:0001522pseudouridine synthesis-IEAProcess
GO:0001650fibrillar center-ISOComponent
GO:0003720telomerase activity-ISOFunction
GO:0003720telomerase activity-ISOFunction
GO:0003723RNA binding-IEAFunction
GO:0003723RNA binding-ISOFunction
GO:0005515protein binding7798307.12446766.15044956.16618814.IPIFunction
GO:0005634nucleus-ISOComponent
GO:0005654nucleoplasm7798307.IDAComponent
GO:0005697telomerase holoenzyme complex-ISOComponent
GO:0005697telomerase holoenzyme complex-ISSComponent
GO:0005730nucleolus7798307.IDAComponent
GO:0005730nucleolus-ISOComponent
GO:0006396RNA processing-IEAProcess
GO:0007004telomere maintenance via telomerase-ISOProcess
GO:0007004telomere maintenance via telomerase-ISSProcess
GO:0008284positive regulation of cell proliferation10679015.IDAProcess
GO:0009982pseudouridine synthase activity21873635.IBAFunction
GO:0009982pseudouridine synthase activity-IEAFunction
GO:0009982pseudouridine synthase activity-ISOFunction
GO:0009982pseudouridine synthase activity-ISSFunction
GO:0015030Cajal body7798307.IDAComponent
GO:0015030Cajal body-ISOComponent
GO:0031118rRNA pseudouridine synthesis21873635.IBAProcess
GO:0031118rRNA pseudouridine synthesis-ISOProcess
GO:0031120snRNA pseudouridine synthesis21873635.IBAProcess
GO:0031429box H/ACA snoRNP complex21873635.IBAComponent
GO:0031429box H/ACA snoRNP complex10679015.12446766.IDAComponent
GO:0031429box H/ACA snoRNP complex-ISOComponent
GO:0032212positive regulation of telomere maintenance via telomerase-ISOProcess
GO:0033979box H/ACA snoRNA metabolic process-ISOProcess
GO:0034513box H/ACA snoRNA binding-ISOFunction
GO:0051973positive regulation of telomerase activity-ISOProcess
GO:0070034telomerase RNA binding-ISOFunction
GO:0090661box H/ACA telomerase RNP complex-ISOComponent
GO:0090666scaRNA localization to Cajal body-ISOProcess
GO:0090669telomerase RNA stabilization-ISOProcess
GO:1904851positive regulation of establishment of protein localization to telomere-ISOProcess
GO:1904872regulation of telomerase RNA localization to Cajal body-ISOProcess
GO:1904874positive regulation of telomerase RNA localization to Cajal body-ISOProcess
GO:1990481mRNA pseudouridine synthesis21873635.IBAProcess

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