EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000056721 (Gene tree)
Gene ID: 314172
Gene Symbol: Fancm
Alias: LOC314172|RGD1307897
Full Name: FA complementation group M
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 52950 bases
Position: chr6:86823684-86876633
Accession: 1307897
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000006574	ResIII	PF04851.15	7.4e-18	1	1
ENSRNOP00000074177	ResIII	PF04851.15	9.9e-18	1	1
ENSRNOP00000006574	DEAD	PF00270.29	4.6e-17	1	1
ENSRNOP00000074177	DEAD	PF00270.29	1.4e-16	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000086894	-	642	-	ENSRNOP00000073969	138 (aa)	-	A0A0G2K6W7
ENSRNOT00000088683	-	788	-	-	- (aa)	-	-
ENSRNOT00000093492	-	1554	-	ENSRNOP00000076245	517 (aa)	-	A0A1W2Q6G5
ENSRNOT00000087186	-	404	-	-	- (aa)	-	-
ENSRNOT00000006574	-	3116	-	ENSRNOP00000006574	1007 (aa)	-	D3ZJ52
ENSRNOT00000059244	-	3313	-	ENSRNOP00000056011	971 (aa)	-	F7FA21
ENSRNOT00000086081	-	6345	-	ENSRNOP00000074177	2017 (aa)	-	A0A0G2K7F0

Gene Model

Click here to download ENSRNOG00000056721's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000056721's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000056721	Fancm	100	71.914	ENSG00000187790	FANCM	99	81.764	Homo_sapiens
ENSRNOG00000056721	Fancm	99	70.874	ENSAMEG00000002114	FANCM	99	62.031	Ailuropoda_melanoleuca
ENSRNOG00000056721	Fancm	64	61.765	ENSACIG00000005444	-	98	61.094	Amphilophus_citrinellus
ENSRNOG00000056721	Fancm	98	46.027	ENSATEG00000012412	-	88	44.789	Anabas_testudineus
ENSRNOG00000056721	Fancm	100	70.428	ENSANAG00000025075	FANCM	99	63.234	Aotus_nancymaae
ENSRNOG00000056721	Fancm	97	46.048	ENSACLG00000016008	-	86	46.525	Astatotilapia_calliptera
ENSRNOG00000056721	Fancm	76	51.355	ENSAMXG00000020275	-	73	51.355	Astyanax_mexicanus
ENSRNOG00000056721	Fancm	100	69.549	ENSBTAG00000002612	FANCM	95	81.461	Bos_taurus
ENSRNOG00000056721	Fancm	100	70.331	ENSCJAG00000015945	FANCM	99	63.470	Callithrix_jacchus
ENSRNOG00000056721	Fancm	100	69.688	ENSCAFG00000014062	FANCM	99	61.909	Canis_familiaris
ENSRNOG00000056721	Fancm	65	80.988	ENSCAFG00020022069	-	99	80.988	Canis_lupus_dingo
ENSRNOG00000056721	Fancm	100	70.946	ENSCHIG00000015176	FANCM	100	62.728	Capra_hircus
ENSRNOG00000056721	Fancm	59	85.185	ENSTSYG00000036497	-	89	85.185	Carlito_syrichta
ENSRNOG00000056721	Fancm	100	68.799	ENSCPOG00000001446	FANCM	100	61.599	Cavia_porcellus
ENSRNOG00000056721	Fancm	100	70.914	ENSCCAG00000026593	FANCM	99	61.475	Cebus_capucinus
ENSRNOG00000056721	Fancm	100	71.040	ENSCATG00000031379	FANCM	99	62.740	Cercocebus_atys
ENSRNOG00000056721	Fancm	100	71.234	ENSCSAG00000015308	FANCM	99	63.011	Chlorocebus_sabaeus
ENSRNOG00000056721	Fancm	91	72.781	ENSCHOG00000000190	FANCM	82	72.781	Choloepus_hoffmanni
ENSRNOG00000056721	Fancm	98	56.322	ENSCPBG00000015089	FANCM	100	45.658	Chrysemys_picta_bellii
ENSRNOG00000056721	Fancm	100	70.845	ENSCANG00000029498	FANCM	99	62.464	Colobus_angolensis_palliatus
ENSRNOG00000056721	Fancm	100	82.609	ENSCGRG00001023573	Fancm	99	74.276	Cricetulus_griseus_chok1gshd
ENSRNOG00000056721	Fancm	91	50.641	ENSCSEG00000002313	-	82	50.720	Cynoglossus_semilaevis
ENSRNOG00000056721	Fancm	92	48.342	ENSCVAG00000015579	-	68	56.140	Cyprinodon_variegatus
ENSRNOG00000056721	Fancm	100	68.962	ENSDNOG00000007697	FANCM	99	59.703	Dasypus_novemcinctus
ENSRNOG00000056721	Fancm	100	68.762	ENSDORG00000010095	Fancm	99	61.010	Dipodomys_ordii
ENSRNOG00000056721	Fancm	82	73.938	ENSETEG00000003360	FANCM	81	74.242	Echinops_telfairi
ENSRNOG00000056721	Fancm	100	70.126	ENSEASG00005007781	FANCM	99	80.923	Equus_asinus_asinus
ENSRNOG00000056721	Fancm	100	70.417	ENSECAG00000018694	FANCM	86	64.955	Equus_caballus
ENSRNOG00000056721	Fancm	94	50.156	ENSEEUG00000005607	-	88	55.696	Erinaceus_europaeus
ENSRNOG00000056721	Fancm	93	50.417	ENSELUG00000015761	-	89	44.552	Esox_lucius
ENSRNOG00000056721	Fancm	65	81.157	ENSFCAG00000022146	-	100	81.157	Felis_catus
ENSRNOG00000056721	Fancm	92	52.720	ENSFALG00000001703	FANCM	100	42.077	Ficedula_albicollis
ENSRNOG00000056721	Fancm	100	68.738	ENSFDAG00000009043	FANCM	100	60.706	Fukomys_damarensis
ENSRNOG00000056721	Fancm	53	72.868	ENSFHEG00000006371	-	88	72.868	Fundulus_heteroclitus
ENSRNOG00000056721	Fancm	79	55.846	ENSGMOG00000002019	-	73	56.633	Gadus_morhua
ENSRNOG00000056721	Fancm	91	54.346	ENSGALG00000031182	FANCM	92	60.577	Gallus_gallus
ENSRNOG00000056721	Fancm	77	55.341	ENSGACG00000009448	-	80	54.955	Gasterosteus_aculeatus
ENSRNOG00000056721	Fancm	100	71.623	ENSGGOG00000008546	FANCM	99	63.234	Gorilla_gorilla
ENSRNOG00000056721	Fancm	97	45.772	ENSHBUG00000007085	-	86	46.247	Haplochromis_burtoni
ENSRNOG00000056721	Fancm	100	68.605	ENSHGLG00000013787	FANCM	100	61.843	Heterocephalus_glaber_female
ENSRNOG00000056721	Fancm	100	68.605	ENSHGLG00100006377	FANCM	100	61.758	Heterocephalus_glaber_male
ENSRNOG00000056721	Fancm	63	59.409	ENSHCOG00000013769	-	99	57.670	Hippocampus_comes
ENSRNOG00000056721	Fancm	77	52.375	ENSIPUG00000014629	fancm	88	54.366	Ictalurus_punctatus
ENSRNOG00000056721	Fancm	76	52.189	ENSLBEG00000004982	-	92	39.881	Labrus_bergylta
ENSRNOG00000056721	Fancm	98	53.435	ENSLACG00000007739	FANCM	99	43.109	Latimeria_chalumnae
ENSRNOG00000056721	Fancm	77	60.520	ENSLOCG00000011318	FANCM	79	60.520	Lepisosteus_oculatus
ENSRNOG00000056721	Fancm	100	69.603	ENSLAFG00000001136	FANCM	100	62.324	Loxodonta_africana
ENSRNOG00000056721	Fancm	100	71.040	ENSMFAG00000000383	FANCM	99	62.788	Macaca_fascicularis
ENSRNOG00000056721	Fancm	100	70.943	ENSMMUG00000016513	FANCM	99	62.644	Macaca_mulatta
ENSRNOG00000056721	Fancm	100	70.943	ENSMNEG00000038659	FANCM	99	62.788	Macaca_nemestrina
ENSRNOG00000056721	Fancm	97	70.024	ENSMLEG00000035743	FANCM	99	70.024	Mandrillus_leucophaeus
ENSRNOG00000056721	Fancm	98	46.863	ENSMAMG00000007087	-	77	52.894	Mastacembelus_armatus
ENSRNOG00000056721	Fancm	79	52.179	ENSMZEG00005004644	-	79	52.402	Maylandia_zebra
ENSRNOG00000056721	Fancm	99	78.386	ENSMAUG00000015450	Fancm	99	72.277	Mesocricetus_auratus
ENSRNOG00000056721	Fancm	100	70.777	ENSMICG00000005811	FANCM	99	63.807	Microcebus_murinus
ENSRNOG00000056721	Fancm	100	78.171	ENSMOCG00000008775	Fancm	99	71.973	Microtus_ochrogaster
ENSRNOG00000056721	Fancm	73	55.511	ENSMMOG00000010215	-	65	55.067	Mola_mola
ENSRNOG00000056721	Fancm	99	59.266	ENSMODG00000007334	FANCM	98	49.758	Monodelphis_domestica
ENSRNOG00000056721	Fancm	100	87.810	MGP_CAROLIEiJ_G0017791	Fancm	99	83.670	Mus_caroli
ENSRNOG00000056721	Fancm	100	87.438	ENSMUSG00000055884	Fancm	98	92.661	Mus_musculus
ENSRNOG00000056721	Fancm	100	85.025	MGP_PahariEiJ_G0029547	Fancm	99	82.203	Mus_pahari
ENSRNOG00000056721	Fancm	100	88.032	MGP_SPRETEiJ_G0018636	Fancm	99	83.259	Mus_spretus
ENSRNOG00000056721	Fancm	100	69.806	ENSMPUG00000004849	FANCM	99	61.824	Mustela_putorius_furo
ENSRNOG00000056721	Fancm	99	69.629	ENSMLUG00000006671	FANCM	100	61.953	Myotis_lucifugus
ENSRNOG00000056721	Fancm	99	75.198	ENSNGAG00000017199	Fancm	99	68.916	Nannospalax_galili
ENSRNOG00000056721	Fancm	100	71.775	ENSNLEG00000004432	FANCM	99	63.527	Nomascus_leucogenys
ENSRNOG00000056721	Fancm	70	61.603	ENSMEUG00000004977	-	71	61.770	Notamacropus_eugenii
ENSRNOG00000056721	Fancm	77	56.511	ENSONIG00000003531	-	78	57.016	Oreochromis_niloticus
ENSRNOG00000056721	Fancm	92	57.889	ENSOANG00000013997	FANCM	99	48.600	Ornithorhynchus_anatinus
ENSRNOG00000056721	Fancm	99	70.410	ENSOCUG00000007539	FANCM	99	61.902	Oryctolagus_cuniculus
ENSRNOG00000056721	Fancm	82	50.381	ENSORLG00000014503	-	94	50.707	Oryzias_latipes
ENSRNOG00000056721	Fancm	82	50.381	ENSORLG00020013516	-	81	50.707	Oryzias_latipes_hni
ENSRNOG00000056721	Fancm	82	50.436	ENSORLG00015012100	-	81	50.763	Oryzias_latipes_hsok
ENSRNOG00000056721	Fancm	76	53.436	ENSOMEG00000010717	-	76	53.199	Oryzias_melastigma
ENSRNOG00000056721	Fancm	100	69.981	ENSOGAG00000003015	FANCM	100	61.501	Otolemur_garnettii
ENSRNOG00000056721	Fancm	100	70.849	ENSOARG00000009429	FANCM	100	62.758	Ovis_aries
ENSRNOG00000056721	Fancm	100	71.720	ENSPPAG00000028944	FANCM	99	63.474	Pan_paniscus
ENSRNOG00000056721	Fancm	65	80.564	ENSPPRG00000011952	-	100	80.712	Panthera_pardus
ENSRNOG00000056721	Fancm	65	80.415	ENSPTIG00000018621	-	100	80.564	Panthera_tigris_altaica
ENSRNOG00000056721	Fancm	100	71.623	ENSPTRG00000006307	FANCM	99	63.523	Pan_troglodytes
ENSRNOG00000056721	Fancm	100	70.845	ENSPANG00000023200	FANCM	99	62.740	Papio_anubis
ENSRNOG00000056721	Fancm	100	81.416	ENSPEMG00000005619	Fancm	99	74.363	Peromyscus_maniculatus_bairdii
ENSRNOG00000056721	Fancm	64	72.315	ENSPCIG00000005354	-	98	72.617	Phascolarctos_cinereus
ENSRNOG00000056721	Fancm	93	45.161	ENSPFOG00000002008	-	93	53.178	Poecilia_formosa
ENSRNOG00000056721	Fancm	78	51.869	ENSPLAG00000014164	-	77	52.273	Poecilia_latipinna
ENSRNOG00000056721	Fancm	78	51.751	ENSPMEG00000010746	-	77	52.154	Poecilia_mexicana
ENSRNOG00000056721	Fancm	78	51.529	ENSPREG00000019849	-	77	51.932	Poecilia_reticulata
ENSRNOG00000056721	Fancm	100	71.914	ENSPPYG00000005781	FANCM	98	66.820	Pongo_abelii
ENSRNOG00000056721	Fancm	69	70.060	ENSPCAG00000011363	-	69	70.060	Procavia_capensis
ENSRNOG00000056721	Fancm	93	75.294	ENSPCOG00000014388	FANCM	98	75.294	Propithecus_coquereli
ENSRNOG00000056721	Fancm	71	75.758	ENSPVAG00000015802	FANCM	71	75.758	Pteropus_vampyrus
ENSRNOG00000056721	Fancm	98	42.360	ENSPNAG00000013558	-	84	48.721	Pygocentrus_nattereri
ENSRNOG00000056721	Fancm	100	69.864	ENSRBIG00000011451	FANCM	99	62.134	Rhinopithecus_bieti
ENSRNOG00000056721	Fancm	100	70.485	ENSRROG00000028917	FANCM	99	62.692	Rhinopithecus_roxellana
ENSRNOG00000056721	Fancm	56	31.529	YIR002C	-	60	32.006	Saccharomyces_cerevisiae
ENSRNOG00000056721	Fancm	100	70.817	ENSSBOG00000030882	FANCM	99	63.138	Saimiri_boliviensis_boliviensis
ENSRNOG00000056721	Fancm	98	59.245	ENSSHAG00000000507	FANCM	100	49.151	Sarcophilus_harrisii
ENSRNOG00000056721	Fancm	92	49.790	ENSSMAG00000019903	-	78	60.991	Scophthalmus_maximus
ENSRNOG00000056721	Fancm	97	46.965	ENSSDUG00000016682	-	93	63.174	Seriola_dumerili
ENSRNOG00000056721	Fancm	92	50.158	ENSSLDG00000003408	-	94	43.262	Seriola_lalandi_dorsalis
ENSRNOG00000056721	Fancm	88	78.595	ENSSARG00000002618	FANCM	80	78.763	Sorex_araneus
ENSRNOG00000056721	Fancm	100	68.046	ENSSSCG00000005000	FANCM	99	61.527	Sus_scrofa
ENSRNOG00000056721	Fancm	71	65.616	ENSTGUG00000013226	-	100	65.616	Taeniopygia_guttata
ENSRNOG00000056721	Fancm	63	60.720	ENSTRUG00000009756	-	98	58.859	Takifugu_rubripes
ENSRNOG00000056721	Fancm	97	49.801	ENSTNIG00000017277	-	91	55.489	Tetraodon_nigroviridis
ENSRNOG00000056721	Fancm	100	69.544	ENSTTRG00000006669	FANCM	99	62.150	Tursiops_truncatus
ENSRNOG00000056721	Fancm	64	80.995	ENSUMAG00000007704	-	96	80.995	Ursus_maritimus
ENSRNOG00000056721	Fancm	71	82.000	ENSVPAG00000005763	FANCM	72	82.000	Vicugna_pacos
ENSRNOG00000056721	Fancm	100	69.747	ENSVVUG00000000357	FANCM	99	61.944	Vulpes_vulpes
ENSRNOG00000056721	Fancm	79	51.409	ENSXMAG00000007702	-	76	51.747	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000712	resolution of meiotic recombination intermediates	-	IEA	Process
GO:0000712	resolution of meiotic recombination intermediates	-	ISO	Process
GO:0003677	DNA binding	-	IEA	Function
GO:0003682	chromatin binding	-	IEA	Function
GO:0003682	chromatin binding	-	ISO	Function
GO:0004518	nuclease activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005654	nucleoplasm	-	ISO	Component
GO:0006281	DNA repair	-	IEA	Process
GO:0031297	replication fork processing	-	IEA	Process
GO:0031297	replication fork processing	-	ISO	Process
GO:0032508	DNA duplex unwinding	-	IEA	Process
GO:0043140	ATP-dependent 3'-5' DNA helicase activity	-	IEA	Function
GO:0043240	Fanconi anaemia nuclear complex	-	IEA	Component
GO:0043240	Fanconi anaemia nuclear complex	-	ISO	Component
GO:0071821	FANCM-MHF complex	-	IEA	Component
GO:0071821	FANCM-MHF complex	-	ISO	Component
GO:0090305	nucleic acid phosphodiester bond hydrolysis	-	IEA	Process
GO:1902527	positive regulation of protein monoubiquitination	-	IEA	Process
GO:1902527	positive regulation of protein monoubiquitination	-	ISO	Process