EuRBPDB

Description
Ensembl ID
ENSRNOG00000058130 (Gene tree)
Gene ID
366790
Gene Symbol
Pym1
Alias
LOC366790|RGD1306096|Wibg
Full Name
PYM homolog 1%2C exon junction complex associated factor
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Plus strand
Length
20708 bases
Position
chr7:3173287-3193994
Accession
1306096
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein ID
Domain
Pfam ID
E-value
Domain number
Total number
ENSRNOP00000071842Mago-bindPF09282.101.6e-1311
Expression
AdrenalBrainHeartKidneyLiverLungMuscleSpleenTestesThymusUterus0200400600800
AdrenalBrainHeartKidneyLiverLungMuscleSpleenTestesThymusUterusTPM
Transcripts
Transcript ID
Name
Length
RefSeq ID
Protein ID
Length
RefSeq ID
UniportKB ID
ENSRNOT00000092037-1164-ENSRNOP00000071842203 (aa)-D3ZGY1
Gene Model
Pathways
Pathway ID
Pathway Name
Source
rno03013RNA transportKEGG
rno03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)
Paralogs
Ensembl ID
Gene Symbol
Coverage
Identiy
Paralog
Gene Symbol
Coverage
Identiy
ENSRNOG00000058130Pym19471.875ENSRNOG00000049415AABR07055413.19471.875
Orthologs
Ensembl ID
Gene Symbol
Coverage
Identiy
Ortholog
Gene Symbol
Coverage
Identiy
Species
ENSRNOG00000058130Pym19484.896ENSG00000170473PYM19484.896Homo_sapiens
ENSRNOG00000058130Pym19756.132ENSAPOG00000023045pym19455.721Acanthochromis_polyacanthus
ENSRNOG00000058130Pym18885.556ENSAMEG00000003091PYM18985.556Ailuropoda_melanoleuca
ENSRNOG00000058130Pym19757.277ENSACIG00000012769pym19456.373Amphilophus_citrinellus
ENSRNOG00000058130Pym19756.459ENSAOCG00000021358pym19456.500Amphiprion_ocellaris
ENSRNOG00000058130Pym19756.459ENSAPEG00000022679pym19456.500Amphiprion_percula
ENSRNOG00000058130Pym19855.189ENSATEG00000024022pym19256.784Anabas_testudineus
ENSRNOG00000058130Pym19264.677ENSACAG00000005714PYM19463.682Anolis_carolinensis
ENSRNOG00000058130Pym19484.375ENSANAG00000036967PYM19484.375Aotus_nancymaae
ENSRNOG00000058130Pym19852.778ENSAMXG00000007650pym19255.721Astyanax_mexicanus
ENSRNOG00000058130Pym19482.812ENSBTAG00000031146PYM19482.812Bos_taurus
ENSRNOG00000058130Pym19483.854ENSCJAG00000041077PYM19484.574Callithrix_jacchus
ENSRNOG00000058130Pym19484.896ENSCAFG00000000076PYM19484.896Canis_familiaris
ENSRNOG00000058130Pym19484.896ENSCAFG00020026099PYM19484.896Canis_lupus_dingo
ENSRNOG00000058130Pym19480.729ENSCHIG00000026207PYM19383.889Capra_hircus
ENSRNOG00000058130Pym19482.292ENSTSYG00000000787PYM19482.292Carlito_syrichta
ENSRNOG00000058130Pym18886.592ENSCAPG00000010374PYM19486.592Cavia_aperea
ENSRNOG00000058130Pym19483.333ENSCPOG00000031546PYM19483.333Cavia_porcellus
ENSRNOG00000058130Pym19484.375ENSCCAG00000026187PYM19485.792Cebus_capucinus
ENSRNOG00000058130Pym19484.375ENSCATG00000018801PYM19484.375Cercocebus_atys
ENSRNOG00000058130Pym19479.167ENSCLAG00000007964PYM19479.167Chinchilla_lanigera
ENSRNOG00000058130Pym18887.222ENSCSAG00000005291PYM19287.222Chlorocebus_sabaeus
ENSRNOG00000058130Pym19439.000ENSCING00000006448-8942.328Ciona_intestinalis
ENSRNOG00000058130Pym19237.089ENSCSAVG00000009805-8438.916Ciona_savignyi
ENSRNOG00000058130Pym19484.375ENSCANG00000020338-9484.375Colobus_angolensis_palliatus
ENSRNOG00000058130Pym19678.061ENSCANG00000019757-8679.894Colobus_angolensis_palliatus
ENSRNOG00000058130Pym19489.529ENSCGRG00001018051-9489.529Cricetulus_griseus_chok1gshd
ENSRNOG00000058130Pym19473.158ENSCGRG00001004231-9375.393Cricetulus_griseus_chok1gshd
ENSRNOG00000058130Pym19289.840ENSCGRG00000012495-9389.840Cricetulus_griseus_crigri
ENSRNOG00000058130Pym19473.158ENSCGRG00000018933-9375.393Cricetulus_griseus_crigri
ENSRNOG00000058130Pym19157.436ENSCSEG00000021531pym19454.040Cynoglossus_semilaevis
ENSRNOG00000058130Pym19360.000ENSCVAG00000017360pym17960.106Cyprinodon_variegatus
ENSRNOG00000058130Pym19755.172ENSDARG00000046024pym19252.475Danio_rerio
ENSRNOG00000058130Pym19481.771ENSDNOG00000048414PYM18681.771Dasypus_novemcinctus
ENSRNOG00000058130Pym19483.854ENSDORG00000029448Pym19483.854Dipodomys_ordii
ENSRNOG00000058130Pym19732.727FBgn0034918Pym9232.075Drosophila_melanogaster
ENSRNOG00000058130Pym18879.888ENSETEG00000004461-9479.888Echinops_telfairi
ENSRNOG00000058130Pym18788.136ENSEASG00005002271PYM18187.640Equus_asinus_asinus
ENSRNOG00000058130Pym19484.375ENSECAG00000011870PYM19484.375Equus_caballus
ENSRNOG00000058130Pym19055.497ENSELUG00000024250pym19055.319Esox_lucius
ENSRNOG00000058130Pym19483.854ENSFCAG00000013967PYM19186.957Felis_catus
ENSRNOG00000058130Pym19483.333ENSFDAG00000006314PYM19186.559Fukomys_damarensis
ENSRNOG00000058130Pym19157.868ENSFHEG00000005884pym19257.868Fundulus_heteroclitus
ENSRNOG00000058130Pym19158.854ENSGMOG00000007239pym19156.186Gadus_morhua
ENSRNOG00000058130Pym19266.839ENSGALG00000046169PYM19466.839Gallus_gallus
ENSRNOG00000058130Pym19756.398ENSGAFG00000003280pym19356.281Gambusia_affinis
ENSRNOG00000058130Pym19951.961ENSGACG00000010703pym19252.880Gasterosteus_aculeatus
ENSRNOG00000058130Pym18964.249ENSGAGG00000001973PYM18461.979Gopherus_agassizii
ENSRNOG00000058130Pym19484.375ENSGGOG00000043246PYM19484.375Gorilla_gorilla
ENSRNOG00000058130Pym19158.586ENSHBUG00000012719pym19457.711Haplochromis_burtoni
ENSRNOG00000058130Pym19187.027ENSHGLG00000017155PYM19187.027Heterocephalus_glaber_female
ENSRNOG00000058130Pym19483.854ENSHGLG00100015341PYM19487.151Heterocephalus_glaber_male
ENSRNOG00000058130Pym19757.561ENSHCOG00000007987pym17957.513Hippocampus_comes
ENSRNOG00000058130Pym19853.953ENSIPUG00000005975wibga9254.000Ictalurus_punctatus
ENSRNOG00000058130Pym19484.375ENSSTOG00000014206PYM19386.885Ictidomys_tridecemlineatus
ENSRNOG00000058130Pym19482.199ENSJJAG00000013338Pym19280.435Jaculus_jaculus
ENSRNOG00000058130Pym19753.636ENSKMAG00000006351pym19353.365Kryptolebias_marmoratus
ENSRNOG00000058130Pym19757.767ENSLBEG00000015707pym19258.247Labrus_bergylta
ENSRNOG00000058130Pym19356.716ENSLACG00000014398PYM19356.716Latimeria_chalumnae
ENSRNOG00000058130Pym19481.771ENSLAFG00000002369PYM19481.771Loxodonta_africana
ENSRNOG00000058130Pym19484.375ENSMFAG00000003048PYM19484.375Macaca_fascicularis
ENSRNOG00000058130Pym19483.854ENSMMUG00000011002PYM19483.854Macaca_mulatta
ENSRNOG00000058130Pym19484.375ENSMNEG00000034677PYM19484.375Macaca_nemestrina
ENSRNOG00000058130Pym19483.854ENSMLEG00000007971PYM19483.854Mandrillus_leucophaeus
ENSRNOG00000058130Pym19754.839ENSMAMG00000001588pym19453.431Mastacembelus_armatus
ENSRNOG00000058130Pym19158.081ENSMZEG00005026458pym19457.214Maylandia_zebra
ENSRNOG00000058130Pym19487.958ENSMAUG00000007318Pym19487.958Mesocricetus_auratus
ENSRNOG00000058130Pym19483.333ENSMICG00000032962PYM19483.333Microcebus_murinus
ENSRNOG00000058130Pym19486.842ENSMOCG00000010208Pym19486.387Microtus_ochrogaster
ENSRNOG00000058130Pym19757.921ENSMMOG00000009301pym19356.633Mola_mola
ENSRNOG00000058130Pym19754.545ENSMALG00000013496pym19454.000Monopterus_albus
ENSRNOG00000058130Pym19493.717MGP_CAROLIEiJ_G0015953Pym19493.717Mus_caroli
ENSRNOG00000058130Pym19492.147ENSMUSG00000064030Pym19492.147Mus_musculus
ENSRNOG00000058130Pym19392.553MGP_PahariEiJ_G0031131Pym19292.553Mus_pahari
ENSRNOG00000058130Pym19492.147MGP_SPRETEiJ_G0016778Pym19492.147Mus_spretus
ENSRNOG00000058130Pym19484.375ENSMPUG00000000931PYM19484.375Mustela_putorius_furo
ENSRNOG00000058130Pym18983.978ENSMLUG00000003586PYM19083.978Myotis_lucifugus
ENSRNOG00000058130Pym18886.667ENSNGAG00000019207Pym18886.188Nannospalax_galili
ENSRNOG00000058130Pym19758.571ENSNBRG00000006951pym19457.711Neolamprologus_brichardi
ENSRNOG00000058130Pym19484.896ENSNLEG00000017588PYM19484.896Nomascus_leucogenys
ENSRNOG00000058130Pym18780.337ENSMEUG00000001017PYM19380.226Notamacropus_eugenii
ENSRNOG00000058130Pym19481.250ENSOPRG00000007797PYM19481.250Ochotona_princeps
ENSRNOG00000058130Pym19483.333ENSODEG00000004289PYM19483.333Octodon_degus
ENSRNOG00000058130Pym19156.716ENSONIG00000016740pym19357.214Oreochromis_niloticus
ENSRNOG00000058130Pym19383.158ENSOCUG00000025969PYM18583.158Oryctolagus_cuniculus
ENSRNOG00000058130Pym19759.420ENSORLG00000030592pym19254.902Oryzias_latipes
ENSRNOG00000058130Pym19758.852ENSORLG00020011264pym19254.854Oryzias_latipes_hni
ENSRNOG00000058130Pym19760.194ENSORLG00015005287pym19255.665Oryzias_latipes_hsok
ENSRNOG00000058130Pym19759.804ENSOMEG00000022250pym19255.941Oryzias_melastigma
ENSRNOG00000058130Pym18886.667ENSOGAG00000007038PYM18886.667Otolemur_garnettii
ENSRNOG00000058130Pym19481.250ENSOARG00000010856PYM19481.250Ovis_aries
ENSRNOG00000058130Pym19484.896ENSPPAG00000043630PYM19484.896Pan_paniscus
ENSRNOG00000058130Pym19482.812ENSPPRG00000013243PYM19185.870Panthera_pardus
ENSRNOG00000058130Pym19482.812ENSPTIG00000017380PYM19185.870Panthera_tigris_altaica
ENSRNOG00000058130Pym19484.896ENSPTRG00000005067PYM19484.896Pan_troglodytes
ENSRNOG00000058130Pym19483.854ENSPANG00000009562PYM19483.854Papio_anubis
ENSRNOG00000058130Pym19860.952ENSPKIG00000006301pym19260.513Paramormyrops_kingsleyae
ENSRNOG00000058130Pym19462.871ENSPSIG00000003043PYM19460.697Pelodiscus_sinensis
ENSRNOG00000058130Pym19857.005ENSPMGG00000023161pym19255.440Periophthalmus_magnuspinnatus
ENSRNOG00000058130Pym19487.435ENSPEMG00000009372Pym19487.435Peromyscus_maniculatus_bairdii
ENSRNOG00000058130Pym19177.838ENSPCIG00000024658PYM19077.838Phascolarctos_cinereus
ENSRNOG00000058130Pym19757.143ENSPFOG00000008193pym19257.576Poecilia_formosa
ENSRNOG00000058130Pym19756.938ENSPLAG00000009228pym19256.853Poecilia_latipinna
ENSRNOG00000058130Pym19756.938ENSPMEG00000001505pym19256.853Poecilia_mexicana
ENSRNOG00000058130Pym19484.375ENSPPYG00000004635PYM19386.740Pongo_abelii
ENSRNOG00000058130Pym19483.854ENSPCOG00000019706PYM19484.239Propithecus_coquereli
ENSRNOG00000058130Pym19485.417ENSPVAG00000011437PYM19287.845Pteropus_vampyrus
ENSRNOG00000058130Pym19159.391ENSPNYG00000012871pym19458.000Pundamilia_nyererei
ENSRNOG00000058130Pym19755.093ENSPNAG00000018833pym19256.863Pygocentrus_nattereri
ENSRNOG00000058130Pym19479.167ENSRBIG00000033362PYM19479.167Rhinopithecus_bieti
ENSRNOG00000058130Pym19483.854ENSRROG00000043620PYM19483.854Rhinopithecus_roxellana
ENSRNOG00000058130Pym19484.375ENSSBOG00000029393PYM19484.375Saimiri_boliviensis_boliviensis
ENSRNOG00000058130Pym19376.842ENSSHAG00000008280PYM19376.842Sarcophilus_harrisii
ENSRNOG00000058130Pym19158.333ENSSFOG00015021475pym19256.684Scleropages_formosus
ENSRNOG00000058130Pym19758.852ENSSMAG00000020912pym19458.500Scophthalmus_maximus
ENSRNOG00000058130Pym19754.930ENSSDUG00000001807pym19454.412Seriola_dumerili
ENSRNOG00000058130Pym19756.650ENSSLDG00000013730pym19455.670Seriola_lalandi_dorsalis
ENSRNOG00000058130Pym18885.000ENSSARG00000009569PYM19485.000Sorex_araneus
ENSRNOG00000058130Pym19262.887ENSSPUG00000015059PYM19461.856Sphenodon_punctatus
ENSRNOG00000058130Pym19756.604ENSSPAG00000020100pym19456.650Stegastes_partitus
ENSRNOG00000058130Pym19483.333ENSSSCG00000040825PYM19483.333Sus_scrofa
ENSRNOG00000058130Pym19755.340ENSTRUG00000021367pym19354.124Takifugu_rubripes
ENSRNOG00000058130Pym19853.922ENSTNIG00000012534pym19253.158Tetraodon_nigroviridis
ENSRNOG00000058130Pym18881.111ENSTBEG00000004208PYM19481.111Tupaia_belangeri
ENSRNOG00000058130Pym19484.375ENSTTRG00000014971PYM19485.870Tursiops_truncatus
ENSRNOG00000058130Pym19484.375ENSUAMG00000014521PYM19484.375Ursus_americanus
ENSRNOG00000058130Pym19485.938ENSUMAG00000016241PYM18188.268Ursus_maritimus
ENSRNOG00000058130Pym19484.375ENSVVUG00000022749PYM19484.375Vulpes_vulpes
ENSRNOG00000058130Pym19259.694ENSXETG00000021850pym19458.163Xenopus_tropicalis
ENSRNOG00000058130Pym19756.459ENSXMAG00000011649pym19256.345Xiphophorus_maculatus
Gene Ontology
Go ID
Go_term
PubmedID
Evidence
Category
GO:0000184nuclear-transcribed mRNA catabolic process, nonsense-mediated decay-ISOProcess
GO:0003723RNA binding21873635.IBAFunction
GO:0005634nucleus-ISOComponent
GO:0005730nucleolus-ISOComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0005829cytosol-ISOComponent
GO:0030054cell junction-ISOComponent
GO:0035145exon-exon junction complex21873635.IBAComponent
GO:0035145exon-exon junction complex-ISOComponent
GO:0043022ribosome binding-ISOFunction
GO:0045727positive regulation of translation-ISOProcess
GO:1903259exon-exon junction complex disassembly21873635.IBAProcess
GO:1903259exon-exon junction complex disassembly-ISOProcess