EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000058561 (Gene tree)
Gene ID: 302969
Gene Symbol: Srrm2
Alias: LOC302969
Full Name: serine/arginine repetitive matrix 2
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 17245 bases
Position: chr10:13145099-13162343
Accession: 1310163
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000072307	cwf21	PF08312.12	6.9e-10	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000091287	-	8121	-	ENSRNOP00000072307	2707 (aa)	-	A0A0G2K2M9

Gene Model

Click here to download ENSRNOG00000058561's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000058561's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000058561	Srrm2	88	76.245	ENSBTAG00000012683	SRRM2	52	70.909	Bos_taurus
ENSRNOG00000058561	Srrm2	68	75.911	ENSCAFG00000019346	SRRM2	68	75.936	Canis_familiaris
ENSRNOG00000058561	Srrm2	68	75.911	ENSCAFG00020025919	SRRM2	68	75.936	Canis_lupus_dingo
ENSRNOG00000058561	Srrm2	92	89.796	ENSCHIG00000011257	SRRM2	67	79.549	Capra_hircus
ENSRNOG00000058561	Srrm2	63	88.789	ENSETEG00000019959	SRRM2	85	89.498	Echinops_telfairi
ENSRNOG00000058561	Srrm2	95	90.123	ENSFCAG00000004709	SRRM2	67	76.596	Felis_catus
ENSRNOG00000058561	Srrm2	99	66.940	ENSMODG00000016533	SRRM2	95	78.772	Monodelphis_domestica
ENSRNOG00000058561	Srrm2	99	96.012	MGP_CAROLIEiJ_G0021161	Srrm2	100	98.246	Mus_caroli
ENSRNOG00000058561	Srrm2	68	94.902	ENSMUSG00000039218	Srrm2	100	98.429	Mus_musculus
ENSRNOG00000058561	Srrm2	99	95.975	MGP_SPRETEiJ_G0022071	Srrm2	100	98.246	Mus_spretus
ENSRNOG00000058561	Srrm2	68	80.328	ENSMPUG00000015264	SRRM2	68	75.896	Mustela_putorius_furo
ENSRNOG00000058561	Srrm2	74	81.667	ENSOGAG00000032989	SRRM2	69	77.634	Otolemur_garnettii
ENSRNOG00000058561	Srrm2	68	81.389	ENSRBIG00000033934	SRRM2	67	81.442	Rhinopithecus_bieti
ENSRNOG00000058561	Srrm2	72	90.909	ENSTBEG00000006307	-	62	98.990	Tupaia_belangeri
ENSRNOG00000058561	Srrm2	57	98.246	ENSTTRG00000015432	SRRM2	58	98.246	Tursiops_truncatus
ENSRNOG00000058561	Srrm2	68	76.235	ENSVVUG00000008770	SRRM2	92	76.000	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	-	IEA	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISO	Process
GO:0003674	molecular_function	-	ND	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	-	ISO	Component
GO:0008150	biological_process	-	ND	Process
GO:0015030	Cajal body	-	IEA	Component
GO:0015030	Cajal body	-	ISO	Component
GO:0016607	nuclear speck	-	IEA	Component
GO:0016607	nuclear speck	-	ISO	Component
GO:0047485	protein N-terminus binding	-	IEA	Function
GO:0047485	protein N-terminus binding	-	ISO	Function
GO:0070742	C2H2 zinc finger domain binding	-	IEA	Function
GO:0070742	C2H2 zinc finger domain binding	-	ISO	Function
GO:0071007	U2-type catalytic step 2 spliceosome	-	IEA	Component
GO:0071007	U2-type catalytic step 2 spliceosome	-	ISO	Component
GO:0071013	catalytic step 2 spliceosome	-	ISO	Component