EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000058677 (Gene tree)
Gene ID: 296913
Gene Symbol: Lsm8
Alias: LOC296913
Full Name: LSM8 homolog%2C U6 small nuclear RNA associated
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 5867 bases
Position: chr4:45555077-45560943
Accession: 1308442
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000073002	LSM	PF01423.22	2.5e-19	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000089007	-	797	-	ENSRNOP00000073002	96 (aa)	-	B2RZB6

Gene Model

Click here to download ENSRNOG00000058677's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03018	RNA degradation	KEGG
rno03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000058677's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000058677	Lsm8	92	34.091	ENSRNOG00000015375	Lsm1	65	34.091
ENSRNOG00000058677	Lsm8	73	35.526	ENSRNOG00000019552	Lsm7	72	35.526

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000058677	Lsm8	100	100.000	ENSG00000128534	LSM8	100	100.000	Homo_sapiens
ENSRNOG00000058677	Lsm8	100	92.708	ENSAPOG00000008649	lsm8	100	92.708	Acanthochromis_polyacanthus
ENSRNOG00000058677	Lsm8	100	100.000	ENSAMEG00000001162	LSM8	100	100.000	Ailuropoda_melanoleuca
ENSRNOG00000058677	Lsm8	78	97.333	ENSACIG00000014694	lsm8	100	97.333	Amphilophus_citrinellus
ENSRNOG00000058677	Lsm8	100	92.708	ENSAOCG00000013926	lsm8	100	92.708	Amphiprion_ocellaris
ENSRNOG00000058677	Lsm8	100	92.708	ENSAPEG00000023502	lsm8	100	92.708	Amphiprion_percula
ENSRNOG00000058677	Lsm8	78	97.333	ENSATEG00000023432	lsm8	100	97.333	Anabas_testudineus
ENSRNOG00000058677	Lsm8	95	91.489	ENSAPLG00000005115	LSM8	95	91.489	Anas_platyrhynchos
ENSRNOG00000058677	Lsm8	100	100.000	ENSANAG00000027771	LSM8	100	100.000	Aotus_nancymaae
ENSRNOG00000058677	Lsm8	100	92.708	ENSACLG00000011253	lsm8	100	92.708	Astatotilapia_calliptera
ENSRNOG00000058677	Lsm8	100	94.792	ENSAMXG00000042902	lsm8	100	94.792	Astyanax_mexicanus
ENSRNOG00000058677	Lsm8	100	100.000	ENSBTAG00000012649	LSM8	100	100.000	Bos_taurus
ENSRNOG00000058677	Lsm8	98	58.511	WBGene00003082	lsm-8	96	58.511	Caenorhabditis_elegans
ENSRNOG00000058677	Lsm8	100	100.000	ENSCJAG00000046406	LSM8	100	100.000	Callithrix_jacchus
ENSRNOG00000058677	Lsm8	99	100.000	ENSCAFG00000016459	LSM8	96	100.000	Canis_familiaris
ENSRNOG00000058677	Lsm8	100	100.000	ENSCAFG00020007643	-	100	100.000	Canis_lupus_dingo
ENSRNOG00000058677	Lsm8	89	98.824	ENSCAFG00020012800	-	66	98.824	Canis_lupus_dingo
ENSRNOG00000058677	Lsm8	89	100.000	ENSCHIG00000014201	LSM8	90	100.000	Capra_hircus
ENSRNOG00000058677	Lsm8	100	100.000	ENSTSYG00000032434	LSM8	100	100.000	Carlito_syrichta
ENSRNOG00000058677	Lsm8	77	98.649	ENSCAPG00000008253	LSM8	100	98.649	Cavia_aperea
ENSRNOG00000058677	Lsm8	100	100.000	ENSCPOG00000035673	LSM8	100	100.000	Cavia_porcellus
ENSRNOG00000058677	Lsm8	100	100.000	ENSCCAG00000021329	LSM8	100	100.000	Cebus_capucinus
ENSRNOG00000058677	Lsm8	100	100.000	ENSCATG00000045302	LSM8	100	100.000	Cercocebus_atys
ENSRNOG00000058677	Lsm8	100	100.000	ENSCLAG00000003726	LSM8	100	100.000	Chinchilla_lanigera
ENSRNOG00000058677	Lsm8	100	100.000	ENSCSAG00000010802	-	100	100.000	Chlorocebus_sabaeus
ENSRNOG00000058677	Lsm8	100	95.833	ENSCSAG00000019007	-	100	95.833	Chlorocebus_sabaeus
ENSRNOG00000058677	Lsm8	89	100.000	ENSCPBG00000008154	LSM8	87	100.000	Chrysemys_picta_bellii
ENSRNOG00000058677	Lsm8	100	75.000	ENSCING00000024877	-	100	75.000	Ciona_intestinalis
ENSRNOG00000058677	Lsm8	100	100.000	ENSCANG00000040728	LSM8	100	100.000	Colobus_angolensis_palliatus
ENSRNOG00000058677	Lsm8	100	100.000	ENSCGRG00001000450	Lsm8	100	100.000	Cricetulus_griseus_chok1gshd
ENSRNOG00000058677	Lsm8	89	100.000	ENSCGRG00000005587	Lsm8	100	100.000	Cricetulus_griseus_crigri
ENSRNOG00000058677	Lsm8	100	81.250	ENSCSEG00000004164	lsm8	100	81.250	Cynoglossus_semilaevis
ENSRNOG00000058677	Lsm8	100	91.667	ENSCVAG00000020547	lsm8	100	91.667	Cyprinodon_variegatus
ENSRNOG00000058677	Lsm8	100	91.667	ENSDARG00000091656	lsm8	100	91.667	Danio_rerio
ENSRNOG00000058677	Lsm8	100	100.000	ENSDNOG00000034613	LSM8	100	100.000	Dasypus_novemcinctus
ENSRNOG00000058677	Lsm8	100	100.000	ENSDORG00000027868	Lsm8	100	100.000	Dipodomys_ordii
ENSRNOG00000058677	Lsm8	98	69.149	FBgn0035271	CG2021	99	69.149	Drosophila_melanogaster
ENSRNOG00000058677	Lsm8	100	98.958	ENSETEG00000011594	LSM8	100	98.958	Echinops_telfairi
ENSRNOG00000058677	Lsm8	77	91.892	ENSEBUG00000012017	lsm8	100	91.892	Eptatretus_burgeri
ENSRNOG00000058677	Lsm8	100	100.000	ENSEASG00005008932	LSM8	62	100.000	Equus_asinus_asinus
ENSRNOG00000058677	Lsm8	89	100.000	ENSECAG00000024025	LSM8	77	100.000	Equus_caballus
ENSRNOG00000058677	Lsm8	100	91.667	ENSELUG00000010138	lsm8	100	91.667	Esox_lucius
ENSRNOG00000058677	Lsm8	85	74.390	ENSFCAG00000044794	-	83	74.390	Felis_catus
ENSRNOG00000058677	Lsm8	100	100.000	ENSFCAG00000036620	-	100	100.000	Felis_catus
ENSRNOG00000058677	Lsm8	100	98.958	ENSFALG00000010023	LSM8	100	98.958	Ficedula_albicollis
ENSRNOG00000058677	Lsm8	100	100.000	ENSFDAG00000019530	LSM8	100	100.000	Fukomys_damarensis
ENSRNOG00000058677	Lsm8	100	92.708	ENSFHEG00000013729	lsm8	100	92.708	Fundulus_heteroclitus
ENSRNOG00000058677	Lsm8	100	98.958	ENSGALG00000009110	LSM8	100	98.958	Gallus_gallus
ENSRNOG00000058677	Lsm8	100	91.667	ENSGAFG00000001135	lsm8	100	91.667	Gambusia_affinis
ENSRNOG00000058677	Lsm8	100	100.000	ENSGAGG00000017366	LSM8	100	100.000	Gopherus_agassizii
ENSRNOG00000058677	Lsm8	100	100.000	ENSGGOG00000041883	LSM8	100	100.000	Gorilla_gorilla
ENSRNOG00000058677	Lsm8	100	92.708	ENSHBUG00000003646	lsm8	100	92.708	Haplochromis_burtoni
ENSRNOG00000058677	Lsm8	71	100.000	ENSHGLG00000001988	-	99	100.000	Heterocephalus_glaber_female
ENSRNOG00000058677	Lsm8	100	93.750	ENSHGLG00000019782	-	100	93.750	Heterocephalus_glaber_female
ENSRNOG00000058677	Lsm8	99	96.842	ENSHGLG00100003934	-	95	96.842	Heterocephalus_glaber_male
ENSRNOG00000058677	Lsm8	100	95.833	ENSHGLG00100012166	-	100	95.833	Heterocephalus_glaber_male
ENSRNOG00000058677	Lsm8	100	91.667	ENSHCOG00000005037	lsm8	100	91.667	Hippocampus_comes
ENSRNOG00000058677	Lsm8	100	94.792	ENSIPUG00000019811	NAA38	100	94.792	Ictalurus_punctatus
ENSRNOG00000058677	Lsm8	92	87.500	ENSSTOG00000034801	-	81	87.500	Ictidomys_tridecemlineatus
ENSRNOG00000058677	Lsm8	100	100.000	ENSSTOG00000009039	LSM8	100	100.000	Ictidomys_tridecemlineatus
ENSRNOG00000058677	Lsm8	100	100.000	ENSJJAG00000009031	Lsm8	99	100.000	Jaculus_jaculus
ENSRNOG00000058677	Lsm8	100	92.708	ENSKMAG00000018983	lsm8	100	92.708	Kryptolebias_marmoratus
ENSRNOG00000058677	Lsm8	100	94.792	ENSLACG00000010231	LSM8	100	94.792	Latimeria_chalumnae
ENSRNOG00000058677	Lsm8	100	93.750	ENSLOCG00000015580	lsm8	100	93.750	Lepisosteus_oculatus
ENSRNOG00000058677	Lsm8	100	98.969	ENSLAFG00000011242	LSM8	100	98.969	Loxodonta_africana
ENSRNOG00000058677	Lsm8	100	95.833	ENSMFAG00000013044	-	100	95.833	Macaca_fascicularis
ENSRNOG00000058677	Lsm8	100	100.000	ENSMFAG00000035798	LSM8	100	100.000	Macaca_fascicularis
ENSRNOG00000058677	Lsm8	100	100.000	ENSMMUG00000046401	LSM8	100	97.297	Macaca_mulatta
ENSRNOG00000058677	Lsm8	78	96.000	ENSMNEG00000011141	-	100	96.000	Macaca_nemestrina
ENSRNOG00000058677	Lsm8	100	100.000	ENSMNEG00000036764	-	100	100.000	Macaca_nemestrina
ENSRNOG00000058677	Lsm8	100	84.375	ENSMLEG00000039324	-	100	84.375	Mandrillus_leucophaeus
ENSRNOG00000058677	Lsm8	100	100.000	ENSMLEG00000035828	-	100	100.000	Mandrillus_leucophaeus
ENSRNOG00000058677	Lsm8	78	97.333	ENSMAMG00000018839	lsm8	100	97.333	Mastacembelus_armatus
ENSRNOG00000058677	Lsm8	100	92.708	ENSMZEG00005019138	lsm8	100	92.708	Maylandia_zebra
ENSRNOG00000058677	Lsm8	100	98.958	ENSMGAG00000008808	LSM8	100	98.958	Meleagris_gallopavo
ENSRNOG00000058677	Lsm8	75	93.056	ENSMAUG00000020287	-	100	90.541	Mesocricetus_auratus
ENSRNOG00000058677	Lsm8	100	80.208	ENSMAUG00000015356	-	100	80.208	Mesocricetus_auratus
ENSRNOG00000058677	Lsm8	100	92.708	ENSMAUG00000015721	-	100	92.708	Mesocricetus_auratus
ENSRNOG00000058677	Lsm8	100	100.000	ENSMICG00000042730	LSM8	100	100.000	Microcebus_murinus
ENSRNOG00000058677	Lsm8	100	100.000	ENSMOCG00000001688	Lsm8	100	100.000	Microtus_ochrogaster
ENSRNOG00000058677	Lsm8	78	97.333	ENSMMOG00000006046	lsm8	100	97.333	Mola_mola
ENSRNOG00000058677	Lsm8	76	86.667	ENSMODG00000015729	LSM8	96	86.667	Monodelphis_domestica
ENSRNOG00000058677	Lsm8	100	93.750	ENSMALG00000000405	lsm8	100	93.750	Monopterus_albus
ENSRNOG00000058677	Lsm8	100	100.000	MGP_CAROLIEiJ_G0028125	-	100	100.000	Mus_caroli
ENSRNOG00000058677	Lsm8	100	100.000	ENSMUSG00000044155	Lsm8	100	100.000	Mus_musculus
ENSRNOG00000058677	Lsm8	100	100.000	MGP_PahariEiJ_G0021881	Lsm8	100	100.000	Mus_pahari
ENSRNOG00000058677	Lsm8	100	100.000	MGP_SPRETEiJ_G0029125	-	100	100.000	Mus_spretus
ENSRNOG00000058677	Lsm8	100	100.000	ENSMLUG00000006837	-	100	100.000	Myotis_lucifugus
ENSRNOG00000058677	Lsm8	100	98.958	ENSMLUG00000027762	-	100	98.958	Myotis_lucifugus
ENSRNOG00000058677	Lsm8	100	100.000	ENSNGAG00000016554	Lsm8	100	100.000	Nannospalax_galili
ENSRNOG00000058677	Lsm8	100	92.708	ENSNBRG00000014441	lsm8	100	92.708	Neolamprologus_brichardi
ENSRNOG00000058677	Lsm8	100	100.000	ENSNLEG00000011768	LSM8	100	100.000	Nomascus_leucogenys
ENSRNOG00000058677	Lsm8	100	88.542	ENSMEUG00000007801	LSM8	100	88.542	Notamacropus_eugenii
ENSRNOG00000058677	Lsm8	89	100.000	ENSOPRG00000014809	LSM8	100	100.000	Ochotona_princeps
ENSRNOG00000058677	Lsm8	100	100.000	ENSODEG00000000418	-	100	100.000	Octodon_degus
ENSRNOG00000058677	Lsm8	90	82.558	ENSODEG00000020290	-	100	82.558	Octodon_degus
ENSRNOG00000058677	Lsm8	100	98.958	ENSOANG00000014536	LSM8	100	98.958	Ornithorhynchus_anatinus
ENSRNOG00000058677	Lsm8	100	98.969	ENSOCUG00000017359	LSM8	100	98.969	Oryctolagus_cuniculus
ENSRNOG00000058677	Lsm8	100	82.292	ENSORLG00000017432	lsm8	100	82.292	Oryzias_latipes
ENSRNOG00000058677	Lsm8	100	82.292	ENSORLG00020004376	lsm8	100	82.292	Oryzias_latipes_hni
ENSRNOG00000058677	Lsm8	100	92.708	ENSORLG00015003757	lsm8	100	92.708	Oryzias_latipes_hsok
ENSRNOG00000058677	Lsm8	100	80.208	ENSOMEG00000022509	lsm8	100	81.250	Oryzias_melastigma
ENSRNOG00000058677	Lsm8	100	100.000	ENSOGAG00000013377	LSM8	100	100.000	Otolemur_garnettii
ENSRNOG00000058677	Lsm8	100	100.000	ENSOARG00000017974	LSM8	100	100.000	Ovis_aries
ENSRNOG00000058677	Lsm8	78	100.000	ENSPPAG00000043228	-	100	100.000	Pan_paniscus
ENSRNOG00000058677	Lsm8	100	100.000	ENSPPRG00000006444	LSM8	100	100.000	Panthera_pardus
ENSRNOG00000058677	Lsm8	100	100.000	ENSPTIG00000004722	LSM8	100	100.000	Panthera_tigris_altaica
ENSRNOG00000058677	Lsm8	78	100.000	ENSPTRG00000046596	-	100	100.000	Pan_troglodytes
ENSRNOG00000058677	Lsm8	100	93.750	ENSPANG00000019395	-	100	93.750	Papio_anubis
ENSRNOG00000058677	Lsm8	100	100.000	ENSPANG00000035470	-	100	100.000	Papio_anubis
ENSRNOG00000058677	Lsm8	89	97.647	ENSPKIG00000006092	lsm8	86	97.647	Paramormyrops_kingsleyae
ENSRNOG00000058677	Lsm8	78	100.000	ENSPSIG00000017054	LSM8	100	100.000	Pelodiscus_sinensis
ENSRNOG00000058677	Lsm8	78	97.333	ENSPMGG00000016442	lsm8	100	97.333	Periophthalmus_magnuspinnatus
ENSRNOG00000058677	Lsm8	77	97.297	ENSPEMG00000009153	Lsm8	100	97.297	Peromyscus_maniculatus_bairdii
ENSRNOG00000058677	Lsm8	97	100.000	ENSPCIG00000021467	LSM8	98	100.000	Phascolarctos_cinereus
ENSRNOG00000058677	Lsm8	100	91.667	ENSPFOG00000012340	lsm8	100	91.667	Poecilia_formosa
ENSRNOG00000058677	Lsm8	89	94.118	ENSPLAG00000000516	lsm8	89	94.118	Poecilia_latipinna
ENSRNOG00000058677	Lsm8	100	91.667	ENSPMEG00000022567	lsm8	100	91.667	Poecilia_mexicana
ENSRNOG00000058677	Lsm8	76	85.000	ENSPREG00000005527	lsm8	72	85.000	Poecilia_reticulata
ENSRNOG00000058677	Lsm8	100	100.000	ENSPPYG00000017942	LSM8	100	100.000	Pongo_abelii
ENSRNOG00000058677	Lsm8	100	100.000	ENSPCOG00000003309	-	100	100.000	Propithecus_coquereli
ENSRNOG00000058677	Lsm8	99	77.895	ENSPCOG00000017982	-	99	77.895	Propithecus_coquereli
ENSRNOG00000058677	Lsm8	89	98.824	ENSPVAG00000000990	LSM8	100	98.824	Pteropus_vampyrus
ENSRNOG00000058677	Lsm8	100	92.708	ENSPNYG00000011448	lsm8	100	92.708	Pundamilia_nyererei
ENSRNOG00000058677	Lsm8	100	94.792	ENSPNAG00000010252	lsm8	100	94.792	Pygocentrus_nattereri
ENSRNOG00000058677	Lsm8	100	100.000	ENSRBIG00000032851	LSM8	100	100.000	Rhinopithecus_bieti
ENSRNOG00000058677	Lsm8	100	100.000	ENSRROG00000039618	LSM8	100	100.000	Rhinopithecus_roxellana
ENSRNOG00000058677	Lsm8	100	100.000	ENSSBOG00000023223	LSM8	100	100.000	Saimiri_boliviensis_boliviensis
ENSRNOG00000058677	Lsm8	100	100.000	ENSSHAG00000018435	-	100	100.000	Sarcophilus_harrisii
ENSRNOG00000058677	Lsm8	100	91.667	ENSSFOG00015004412	lsm8	100	91.667	Scleropages_formosus
ENSRNOG00000058677	Lsm8	78	97.333	ENSSMAG00000009458	lsm8	100	97.333	Scophthalmus_maximus
ENSRNOG00000058677	Lsm8	100	92.708	ENSSDUG00000014702	lsm8	100	92.708	Seriola_dumerili
ENSRNOG00000058677	Lsm8	78	97.333	ENSSLDG00000016870	lsm8	100	97.333	Seriola_lalandi_dorsalis
ENSRNOG00000058677	Lsm8	75	100.000	ENSSARG00000009628	-	100	100.000	Sorex_araneus
ENSRNOG00000058677	Lsm8	100	100.000	ENSSPUG00000017419	LSM8	100	100.000	Sphenodon_punctatus
ENSRNOG00000058677	Lsm8	100	92.708	ENSSPAG00000021422	lsm8	100	92.708	Stegastes_partitus
ENSRNOG00000058677	Lsm8	100	100.000	ENSSSCG00000021652	LSM8	100	100.000	Sus_scrofa
ENSRNOG00000058677	Lsm8	100	96.875	ENSTGUG00000016823	-	100	96.875	Taeniopygia_guttata
ENSRNOG00000058677	Lsm8	100	97.917	ENSTGUG00000004730	-	100	97.917	Taeniopygia_guttata
ENSRNOG00000058677	Lsm8	100	92.708	ENSTRUG00000025192	lsm8	100	92.708	Takifugu_rubripes
ENSRNOG00000058677	Lsm8	100	92.708	ENSTNIG00000002864	lsm8	100	92.708	Tetraodon_nigroviridis
ENSRNOG00000058677	Lsm8	100	100.000	ENSTTRG00000001023	LSM8	100	100.000	Tursiops_truncatus
ENSRNOG00000058677	Lsm8	92	96.591	ENSUAMG00000006943	-	92	96.591	Ursus_americanus
ENSRNOG00000058677	Lsm8	92	96.591	ENSUMAG00000003073	LSM8	94	96.591	Ursus_maritimus
ENSRNOG00000058677	Lsm8	100	100.000	ENSVPAG00000001530	LSM8	100	100.000	Vicugna_pacos
ENSRNOG00000058677	Lsm8	78	97.333	ENSVVUG00000013248	-	82	97.333	Vulpes_vulpes
ENSRNOG00000058677	Lsm8	93	96.629	ENSXETG00000021829	lsm8	92	96.629	Xenopus_tropicalis
ENSRNOG00000058677	Lsm8	100	89.583	ENSXCOG00000012938	lsm8	100	89.583	Xiphophorus_couchianus
ENSRNOG00000058677	Lsm8	100	91.667	ENSXMAG00000025919	lsm8	100	91.667	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	-	IEA	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISO	Process
GO:0003674	molecular_function	-	ND	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005688	U6 snRNP	21873635.	IBA	Component
GO:0008150	biological_process	-	ND	Process
GO:0016070	RNA metabolic process	21873635.	IBA	Process
GO:0046540	U4/U6 x U5 tri-snRNP complex	21873635.	IBA	Component
GO:0046540	U4/U6 x U5 tri-snRNP complex	-	ISO	Component
GO:0071005	U2-type precatalytic spliceosome	-	IEA	Component
GO:0071005	U2-type precatalytic spliceosome	-	ISO	Component
GO:0120115	Lsm2-8 complex	-	IEA	Component
GO:0120115	Lsm2-8 complex	-	ISO	Component