EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000059074 (Gene tree)
Gene ID: 494303
Gene Symbol: LOC691661
Alias: V1rg16
Full Name: similar to zinc finger and SCAN domain containing 4
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 10437 bases
Position: chr1:67274428-67284864
Accession: 1597233
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000071880	zf-C2H2	PF00096.26	1.7e-10	1	2
ENSRNOP00000071880	zf-C2H2	PF00096.26	1.7e-10	2	2
ENSRNOP00000071880	zf-met	PF12874.7	1.9e-05	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000082908	-	2143	XM_001079180	ENSRNOP00000071880	507 (aa)	XP_001079180	A0A0G2K1K6

Gene Model

Click here to download ENSRNOG00000059074's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000059074's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000059074	LOC691661	96	50.405	ENSRNOG00000028214	Zscan4f	98	50.405

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000059074	LOC691661	92	46.471	ENSCHIG00000017999	-	97	46.471	Capra_hircus
ENSRNOG00000059074	LOC691661	96	47.879	ENSMUSG00000109969	Zscan4-ps3	98	47.879	Mus_musculus
ENSRNOG00000059074	LOC691661	96	48.283	ENSMUSG00000110190	Zscan4-ps2	98	48.283	Mus_musculus
ENSRNOG00000059074	LOC691661	96	48.081	ENSMUSG00000070828	Zscan4f	98	48.081	Mus_musculus
ENSRNOG00000059074	LOC691661	96	47.273	ENSMUSG00000090714	Zscan4d	98	47.273	Mus_musculus
ENSRNOG00000059074	LOC691661	96	48.485	ENSMUSG00000054272	Zscan4c	98	48.485	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003700	DNA-binding transcription factor activity	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005886	plasma membrane	-	IEA	Component
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0007186	G protein-coupled receptor signaling pathway	-	IEA	Process
GO:0016021	integral component of membrane	-	IEA	Component
GO:0016503	pheromone receptor activity	-	IEA	Function
GO:0019236	response to pheromone	-	IEA	Process
GO:0046872	metal ion binding	-	IEA	Function