EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000059442 (Gene tree)
Gene ID: 306231
Gene Symbol: Pde12
Alias: 2'-PDE|2-PDE|LOC306231|LRRGT00074|RGD1310975
Full Name: phosphodiesterase 12
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 10226 bases
Position: chr16:2357028-2367253
Accession: 1310975
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000073047	Exo_endo_phos	PF03372.23	7.4e-19	1	1
ENSRNOP00000074876	Exo_endo_phos	PF03372.23	1.3e-17	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000083573	-	2421	-	ENSRNOP00000073047	608 (aa)	-	Q6AXQ5
ENSRNOT00000079625	-	2118	-	ENSRNOP00000074876	705 (aa)	-	Q6TUH0

Gene Model

Click here to download ENSRNOG00000059442's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000059442's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000059442	Pde12	100	89.491	ENSG00000174840	PDE12	100	89.491	Homo_sapiens
ENSRNOG00000059442	Pde12	95	58.433	ENSAPOG00000018806	pde12	94	58.433	Acanthochromis_polyacanthus
ENSRNOG00000059442	Pde12	100	88.506	ENSAMEG00000011802	PDE12	100	89.739	Ailuropoda_melanoleuca
ENSRNOG00000059442	Pde12	95	59.278	ENSACIG00000014918	pde12	94	58.744	Amphilophus_citrinellus
ENSRNOG00000059442	Pde12	95	58.377	ENSAOCG00000016376	pde12	94	58.448	Amphiprion_ocellaris
ENSRNOG00000059442	Pde12	95	58.997	ENSAPEG00000000756	pde12	94	58.824	Amphiprion_percula
ENSRNOG00000059442	Pde12	94	57.958	ENSATEG00000003072	pde12	97	58.131	Anabas_testudineus
ENSRNOG00000059442	Pde12	100	61.750	ENSACAG00000003067	PDE12	100	62.885	Anolis_carolinensis
ENSRNOG00000059442	Pde12	100	88.834	ENSANAG00000011815	PDE12	100	88.670	Aotus_nancymaae
ENSRNOG00000059442	Pde12	95	58.448	ENSACLG00000010127	pde12	96	57.949	Astatotilapia_calliptera
ENSRNOG00000059442	Pde12	95	59.658	ENSAMXG00000020765	pde12	95	59.487	Astyanax_mexicanus
ENSRNOG00000059442	Pde12	100	89.327	ENSBTAG00000015563	PDE12	100	89.327	Bos_taurus
ENSRNOG00000059442	Pde12	52	31.343	WBGene00011268	pde-12	52	31.343	Caenorhabditis_elegans
ENSRNOG00000059442	Pde12	100	88.506	ENSCJAG00000019905	PDE12	100	88.506	Callithrix_jacchus
ENSRNOG00000059442	Pde12	100	87.338	ENSCAFG00000007792	PDE12	100	87.987	Canis_familiaris
ENSRNOG00000059442	Pde12	100	87.500	ENSCAFG00020006692	PDE12	100	88.149	Canis_lupus_dingo
ENSRNOG00000059442	Pde12	100	89.034	ENSCHIG00000014202	PDE12	100	89.034	Capra_hircus
ENSRNOG00000059442	Pde12	100	89.984	ENSTSYG00000025750	PDE12	100	89.984	Carlito_syrichta
ENSRNOG00000059442	Pde12	100	86.535	ENSCPOG00000001620	PDE12	100	86.535	Cavia_porcellus
ENSRNOG00000059442	Pde12	100	77.668	ENSCCAG00000031290	PDE12	100	77.504	Cebus_capucinus
ENSRNOG00000059442	Pde12	100	89.491	ENSCATG00000044539	PDE12	100	89.491	Cercocebus_atys
ENSRNOG00000059442	Pde12	100	84.893	ENSCLAG00000004864	PDE12	100	84.893	Chinchilla_lanigera
ENSRNOG00000059442	Pde12	100	89.327	ENSCSAG00000012275	PDE12	100	89.327	Chlorocebus_sabaeus
ENSRNOG00000059442	Pde12	89	93.699	ENSCHOG00000002188	-	89	93.699	Choloepus_hoffmanni
ENSRNOG00000059442	Pde12	68	90.315	ENSCHOG00000012173	-	100	90.315	Choloepus_hoffmanni
ENSRNOG00000059442	Pde12	95	73.057	ENSCPBG00000012353	PDE12	91	73.838	Chrysemys_picta_bellii
ENSRNOG00000059442	Pde12	93	36.833	ENSCING00000006903	-	99	40.000	Ciona_intestinalis
ENSRNOG00000059442	Pde12	100	89.491	ENSCANG00000038723	PDE12	100	89.491	Colobus_angolensis_palliatus
ENSRNOG00000059442	Pde12	100	94.572	ENSCGRG00001021836	Pde12	100	94.572	Cricetulus_griseus_chok1gshd
ENSRNOG00000059442	Pde12	100	93.750	ENSCGRG00000012319	Pde12	100	94.079	Cricetulus_griseus_crigri
ENSRNOG00000059442	Pde12	94	57.487	ENSCSEG00000018538	pde12	99	57.363	Cynoglossus_semilaevis
ENSRNOG00000059442	Pde12	97	47.899	ENSCVAG00000003624	pde12	97	48.571	Cyprinodon_variegatus
ENSRNOG00000059442	Pde12	95	56.326	ENSDARG00000030964	pde12	93	56.326	Danio_rerio
ENSRNOG00000059442	Pde12	100	86.548	ENSDNOG00000048413	PDE12	100	86.548	Dasypus_novemcinctus
ENSRNOG00000059442	Pde12	100	89.655	ENSDORG00000004313	Pde12	100	89.655	Dipodomys_ordii
ENSRNOG00000059442	Pde12	95	33.501	FBgn0051759	CG31759	99	33.612	Drosophila_melanogaster
ENSRNOG00000059442	Pde12	70	50.000	ENSEBUG00000004803	pde12	78	50.000	Eptatretus_burgeri
ENSRNOG00000059442	Pde12	100	89.984	ENSEASG00005000644	PDE12	100	89.984	Equus_asinus_asinus
ENSRNOG00000059442	Pde12	100	89.984	ENSECAG00000005326	PDE12	100	89.984	Equus_caballus
ENSRNOG00000059442	Pde12	62	91.329	ENSEEUG00000010406	-	62	91.329	Erinaceus_europaeus
ENSRNOG00000059442	Pde12	95	59.758	ENSELUG00000014391	pde12	93	60.449	Esox_lucius
ENSRNOG00000059442	Pde12	100	88.670	ENSFCAG00000031696	PDE12	100	88.670	Felis_catus
ENSRNOG00000059442	Pde12	79	74.120	ENSFALG00000008401	PDE12	99	74.021	Ficedula_albicollis
ENSRNOG00000059442	Pde12	100	88.177	ENSFDAG00000021278	PDE12	100	88.177	Fukomys_damarensis
ENSRNOG00000059442	Pde12	88	56.642	ENSFHEG00000018967	pde12	85	57.380	Fundulus_heteroclitus
ENSRNOG00000059442	Pde12	95	55.594	ENSGMOG00000018041	pde12	99	55.594	Gadus_morhua
ENSRNOG00000059442	Pde12	95	68.089	ENSGALG00000052355	PDE12	96	68.096	Gallus_gallus
ENSRNOG00000059442	Pde12	95	56.747	ENSGAFG00000002045	pde12	94	57.093	Gambusia_affinis
ENSRNOG00000059442	Pde12	99	55.082	ENSGACG00000003914	pde12	99	55.340	Gasterosteus_aculeatus
ENSRNOG00000059442	Pde12	95	73.057	ENSGAGG00000010266	PDE12	91	73.838	Gopherus_agassizii
ENSRNOG00000059442	Pde12	100	89.327	ENSGGOG00000003312	PDE12	100	89.327	Gorilla_gorilla
ENSRNOG00000059442	Pde12	95	58.692	ENSHBUG00000023370	pde12	94	58.191	Haplochromis_burtoni
ENSRNOG00000059442	Pde12	100	87.521	ENSHGLG00000005661	PDE12	100	87.521	Heterocephalus_glaber_female
ENSRNOG00000059442	Pde12	100	87.521	ENSHGLG00100001136	PDE12	100	87.521	Heterocephalus_glaber_male
ENSRNOG00000059442	Pde12	94	56.849	ENSHCOG00000013749	pde12	94	57.363	Hippocampus_comes
ENSRNOG00000059442	Pde12	95	60.832	ENSIPUG00000007123	Pde12	94	61.179	Ictalurus_punctatus
ENSRNOG00000059442	Pde12	100	89.327	ENSSTOG00000007861	PDE12	100	89.327	Ictidomys_tridecemlineatus
ENSRNOG00000059442	Pde12	100	87.844	ENSJJAG00000006038	Pde12	100	88.493	Jaculus_jaculus
ENSRNOG00000059442	Pde12	100	57.843	ENSKMAG00000018523	pde12	99	57.843	Kryptolebias_marmoratus
ENSRNOG00000059442	Pde12	95	56.261	ENSLBEG00000026775	pde12	94	57.118	Labrus_bergylta
ENSRNOG00000059442	Pde12	95	58.491	ENSLBEG00000009762	PDE12	94	59.253	Labrus_bergylta
ENSRNOG00000059442	Pde12	95	67.069	ENSLACG00000015492	PDE12	94	67.586	Latimeria_chalumnae
ENSRNOG00000059442	Pde12	95	64.818	ENSLOCG00000013277	pde12	93	65.338	Lepisosteus_oculatus
ENSRNOG00000059442	Pde12	92	88.988	ENSLAFG00000002821	PDE12	100	89.520	Loxodonta_africana
ENSRNOG00000059442	Pde12	100	89.655	ENSMFAG00000030966	PDE12	100	89.655	Macaca_fascicularis
ENSRNOG00000059442	Pde12	100	89.655	ENSMMUG00000004052	PDE12	100	89.655	Macaca_mulatta
ENSRNOG00000059442	Pde12	100	89.655	ENSMNEG00000030068	PDE12	100	89.655	Macaca_nemestrina
ENSRNOG00000059442	Pde12	100	89.655	ENSMLEG00000036137	PDE12	100	89.655	Mandrillus_leucophaeus
ENSRNOG00000059442	Pde12	95	60.172	ENSMAMG00000014415	pde12	94	59.931	Mastacembelus_armatus
ENSRNOG00000059442	Pde12	95	55.959	ENSMZEG00005028202	-	98	55.613	Maylandia_zebra
ENSRNOG00000059442	Pde12	95	58.692	ENSMZEG00005016132	pde12	96	58.020	Maylandia_zebra
ENSRNOG00000059442	Pde12	52	79.310	ENSMGAG00000006449	PDE12	99	79.310	Meleagris_gallopavo
ENSRNOG00000059442	Pde12	100	83.170	ENSMAUG00000000442	Pde12	100	83.007	Mesocricetus_auratus
ENSRNOG00000059442	Pde12	100	88.670	ENSMICG00000005723	PDE12	100	88.670	Microcebus_murinus
ENSRNOG00000059442	Pde12	100	90.789	ENSMOCG00000020734	Pde12	100	91.283	Microtus_ochrogaster
ENSRNOG00000059442	Pde12	95	59.413	ENSMMOG00000013636	pde12	97	58.516	Mola_mola
ENSRNOG00000059442	Pde12	100	73.984	ENSMODG00000000155	PDE12	100	74.309	Monodelphis_domestica
ENSRNOG00000059442	Pde12	95	56.649	ENSMALG00000022647	pde12	94	57.340	Monopterus_albus
ENSRNOG00000059442	Pde12	100	96.546	MGP_CAROLIEiJ_G0019032	Pde12	100	96.546	Mus_caroli
ENSRNOG00000059442	Pde12	100	96.053	ENSMUSG00000043702	Pde12	100	96.053	Mus_musculus
ENSRNOG00000059442	Pde12	100	95.724	MGP_PahariEiJ_G0030049	Pde12	100	95.724	Mus_pahari
ENSRNOG00000059442	Pde12	100	96.217	MGP_SPRETEiJ_G0019916	Pde12	100	96.217	Mus_spretus
ENSRNOG00000059442	Pde12	100	89.163	ENSMPUG00000016869	PDE12	100	89.163	Mustela_putorius_furo
ENSRNOG00000059442	Pde12	100	88.670	ENSMLUG00000026487	PDE12	100	88.670	Myotis_lucifugus
ENSRNOG00000059442	Pde12	100	88.487	ENSNGAG00000001228	Pde12	100	88.487	Nannospalax_galili
ENSRNOG00000059442	Pde12	94	54.152	ENSNBRG00000015769	pde12	64	53.979	Neolamprologus_brichardi
ENSRNOG00000059442	Pde12	100	89.655	ENSNLEG00000007269	-	100	89.655	Nomascus_leucogenys
ENSRNOG00000059442	Pde12	100	81.566	ENSNLEG00000034833	-	100	81.566	Nomascus_leucogenys
ENSRNOG00000059442	Pde12	100	73.322	ENSMEUG00000006786	PDE12	100	74.183	Notamacropus_eugenii
ENSRNOG00000059442	Pde12	100	86.645	ENSOPRG00000015273	PDE12	100	87.948	Ochotona_princeps
ENSRNOG00000059442	Pde12	100	88.670	ENSODEG00000006268	PDE12	100	88.670	Octodon_degus
ENSRNOG00000059442	Pde12	95	58.864	ENSONIG00000004293	pde12	100	58.191	Oreochromis_niloticus
ENSRNOG00000059442	Pde12	89	77.901	ENSOANG00000012885	PDE12	98	77.901	Ornithorhynchus_anatinus
ENSRNOG00000059442	Pde12	100	90.328	ENSOCUG00000000823	PDE12	100	90.656	Oryctolagus_cuniculus
ENSRNOG00000059442	Pde12	95	57.513	ENSORLG00000017444	pde12	94	57.513	Oryzias_latipes
ENSRNOG00000059442	Pde12	95	57.340	ENSORLG00020010469	pde12	94	57.686	Oryzias_latipes_hni
ENSRNOG00000059442	Pde12	95	57.168	ENSORLG00015004093	pde12	94	57.168	Oryzias_latipes_hsok
ENSRNOG00000059442	Pde12	95	56.649	ENSOMEG00000020900	pde12	94	56.477	Oryzias_melastigma
ENSRNOG00000059442	Pde12	100	88.670	ENSOGAG00000024093	PDE12	100	88.670	Otolemur_garnettii
ENSRNOG00000059442	Pde12	91	90.235	ENSOARG00000013642	PDE12	100	90.235	Ovis_aries
ENSRNOG00000059442	Pde12	100	88.834	ENSPPAG00000034712	PDE12	100	88.834	Pan_paniscus
ENSRNOG00000059442	Pde12	100	88.342	ENSPPRG00000011738	PDE12	100	88.342	Panthera_pardus
ENSRNOG00000059442	Pde12	83	87.476	ENSPTIG00000019166	PDE12	97	87.476	Panthera_tigris_altaica
ENSRNOG00000059442	Pde12	100	88.998	ENSPTRG00000030221	PDE12	100	88.998	Pan_troglodytes
ENSRNOG00000059442	Pde12	100	89.491	ENSPANG00000007324	PDE12	100	89.491	Papio_anubis
ENSRNOG00000059442	Pde12	95	61.179	ENSPKIG00000025354	pde12	94	61.179	Paramormyrops_kingsleyae
ENSRNOG00000059442	Pde12	95	73.748	ENSPSIG00000004926	PDE12	91	74.527	Pelodiscus_sinensis
ENSRNOG00000059442	Pde12	95	55.172	ENSPMGG00000006742	pde12	96	55.690	Periophthalmus_magnuspinnatus
ENSRNOG00000059442	Pde12	86	95.465	ENSPEMG00000007259	Pde12	100	95.465	Peromyscus_maniculatus_bairdii
ENSRNOG00000059442	Pde12	95	58.031	ENSPFOG00000011864	pde12	94	58.377	Poecilia_formosa
ENSRNOG00000059442	Pde12	72	61.538	ENSPLAG00000023871	pde12	81	61.538	Poecilia_latipinna
ENSRNOG00000059442	Pde12	95	58.304	ENSPMEG00000005674	pde12	94	58.651	Poecilia_mexicana
ENSRNOG00000059442	Pde12	95	58.204	ENSPREG00000022831	pde12	94	58.621	Poecilia_reticulata
ENSRNOG00000059442	Pde12	100	88.998	ENSPPYG00000013769	PDE12	100	88.998	Pongo_abelii
ENSRNOG00000059442	Pde12	100	89.163	ENSPCOG00000026004	PDE12	100	89.163	Propithecus_coquereli
ENSRNOG00000059442	Pde12	100	88.506	ENSPVAG00000008885	PDE12	100	88.506	Pteropus_vampyrus
ENSRNOG00000059442	Pde12	95	58.864	ENSPNYG00000013258	pde12	94	58.362	Pundamilia_nyererei
ENSRNOG00000059442	Pde12	95	63.040	ENSPNAG00000029032	pde12	95	63.903	Pygocentrus_nattereri
ENSRNOG00000059442	Pde12	100	89.491	ENSRBIG00000040704	PDE12	100	89.491	Rhinopithecus_bieti
ENSRNOG00000059442	Pde12	100	89.491	ENSRROG00000031279	PDE12	100	89.491	Rhinopithecus_roxellana
ENSRNOG00000059442	Pde12	100	88.670	ENSSBOG00000023974	PDE12	100	88.506	Saimiri_boliviensis_boliviensis
ENSRNOG00000059442	Pde12	79	64.179	ENSSFOG00015003468	pde12	87	64.179	Scleropages_formosus
ENSRNOG00000059442	Pde12	95	56.649	ENSSMAG00000003258	pde12	94	57.686	Scophthalmus_maximus
ENSRNOG00000059442	Pde12	94	60.034	ENSSDUG00000020470	pde12	94	60.103	Seriola_dumerili
ENSRNOG00000059442	Pde12	94	60.104	ENSSLDG00000019833	pde12	94	60.172	Seriola_lalandi_dorsalis
ENSRNOG00000059442	Pde12	100	86.043	ENSSARG00000007201	PDE12	100	86.043	Sorex_araneus
ENSRNOG00000059442	Pde12	95	59.689	ENSSPAG00000014980	pde12	94	59.418	Stegastes_partitus
ENSRNOG00000059442	Pde12	100	88.998	ENSSSCG00000011465	-	100	88.998	Sus_scrofa
ENSRNOG00000059442	Pde12	52	81.388	ENSSSCG00000034476	-	74	81.388	Sus_scrofa
ENSRNOG00000059442	Pde12	61	80.270	ENSTGUG00000007290	PDE12	100	80.270	Taeniopygia_guttata
ENSRNOG00000059442	Pde12	94	58.478	ENSTRUG00000005159	pde12	93	58.478	Takifugu_rubripes
ENSRNOG00000059442	Pde12	96	57.240	ENSTNIG00000017497	pde12	96	57.240	Tetraodon_nigroviridis
ENSRNOG00000059442	Pde12	80	93.421	ENSTBEG00000008202	PDE12	80	93.421	Tupaia_belangeri
ENSRNOG00000059442	Pde12	100	88.998	ENSTTRG00000014707	PDE12	100	88.998	Tursiops_truncatus
ENSRNOG00000059442	Pde12	76	75.594	ENSUAMG00000008368	-	98	75.594	Ursus_americanus
ENSRNOG00000059442	Pde12	100	89.163	ENSUAMG00000020634	-	100	89.163	Ursus_americanus
ENSRNOG00000059442	Pde12	72	90.596	ENSUMAG00000021906	PDE12	100	90.596	Ursus_maritimus
ENSRNOG00000059442	Pde12	100	87.040	ENSVVUG00000020335	PDE12	100	87.040	Vulpes_vulpes
ENSRNOG00000059442	Pde12	95	54.671	ENSXETG00000008653	pde12	97	54.671	Xenopus_tropicalis
ENSRNOG00000059442	Pde12	95	57.785	ENSXCOG00000000407	pde12	97	58.131	Xiphophorus_couchianus
ENSRNOG00000059442	Pde12	95	57.785	ENSXMAG00000013370	pde12	94	58.131	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000175	3'-5'-exoribonuclease activity	-	IEA	Function
GO:0000175	3'-5'-exoribonuclease activity	-	ISO	Function
GO:0000288	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	-	IEA	Process
GO:0000288	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	-	ISO	Process
GO:0000958	mitochondrial mRNA catabolic process	-	IEA	Process
GO:0000958	mitochondrial mRNA catabolic process	-	ISO	Process
GO:0004527	exonuclease activity	-	ISO	Function
GO:0004535	poly(A)-specific ribonuclease activity	-	IEA	Function
GO:0005759	mitochondrial matrix	-	IEA	Component
GO:0005759	mitochondrial matrix	-	ISO	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0035457	cellular response to interferon-alpha	-	IEA	Process
GO:0035457	cellular response to interferon-alpha	-	ISO	Process
GO:0044528	regulation of mitochondrial mRNA stability	-	IEA	Process
GO:0044528	regulation of mitochondrial mRNA stability	-	ISO	Process
GO:0045070	positive regulation of viral genome replication	-	IEA	Process
GO:0045070	positive regulation of viral genome replication	-	ISO	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0060548	negative regulation of cell death	-	IEA	Process
GO:0060548	negative regulation of cell death	-	ISO	Process
GO:0071346	cellular response to interferon-gamma	-	IEA	Process
GO:0071346	cellular response to interferon-gamma	-	ISO	Process
GO:0071359	cellular response to dsRNA	-	IEA	Process
GO:0071359	cellular response to dsRNA	-	ISO	Process
GO:0090305	nucleic acid phosphodiester bond hydrolysis	-	ISO	Process
GO:0090324	negative regulation of oxidative phosphorylation	-	IEA	Process
GO:0090324	negative regulation of oxidative phosphorylation	-	ISO	Process
GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic	-	IEA	Process
GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic	-	ISO	Process