EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000060154 (Gene tree)
Gene ID: 300208
Gene Symbol: Ddx23
Alias: LOC300208
Full Name: DEAD-box helicase 23
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 17297 bases
Position: chr7:140325431-140342727
Accession: 1308685
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000072026	DEAD	PF00270.29	1.3e-53	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000089612	-	3130	XM_006257343	ENSRNOP00000072026	819 (aa)	XP_006257405	G3V9M1

Gene Model

Click here to download ENSRNOG00000060154's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000060154's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000060154	Ddx23	54	40.535	ENSRNOG00000050868	Ddx43	63	40.535
ENSRNOG00000060154	Ddx23	55	30.753	ENSRNOG00000002612	Ddx52	71	30.753
ENSRNOG00000060154	Ddx23	52	37.868	ENSRNOG00000023383	Ddx3x	63	37.753
ENSRNOG00000060154	Ddx23	50	30.900	ENSRNOG00000001815	Eif4a2	92	30.900
ENSRNOG00000060154	Ddx23	50	38.443	ENSRNOG00000057231	Ddx3	61	38.443
ENSRNOG00000060154	Ddx23	51	39.110	ENSRNOG00000051170	Ddx17	60	39.110
ENSRNOG00000060154	Ddx23	50	37.915	ENSRNOG00000030680	Ddx5	64	37.915
ENSRNOG00000060154	Ddx23	52	40.371	ENSRNOG00000012771	Ddx41	75	37.600
ENSRNOG00000060154	Ddx23	51	31.175	ENSRNOG00000053932	Ddx6	77	31.159
ENSRNOG00000060154	Ddx23	53	38.063	ENSRNOG00000002501	Ddx3y	64	38.063
ENSRNOG00000060154	Ddx23	62	30.275	ENSRNOG00000008081	Ddx27	67	30.275
ENSRNOG00000060154	Ddx23	53	35.845	ENSRNOG00000042451	Ddx59	65	35.682

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000060154	Ddx23	100	98.537	ENSG00000174243	DDX23	100	98.537	Homo_sapiens
ENSRNOG00000060154	Ddx23	100	84.428	ENSAPOG00000003760	ddx23	92	88.679	Acanthochromis_polyacanthus
ENSRNOG00000060154	Ddx23	100	98.415	ENSAMEG00000007123	DDX23	100	98.415	Ailuropoda_melanoleuca
ENSRNOG00000060154	Ddx23	81	92.879	ENSACIG00000000022	ddx23	93	86.198	Amphilophus_citrinellus
ENSRNOG00000060154	Ddx23	100	84.428	ENSAOCG00000017348	ddx23	92	88.679	Amphiprion_ocellaris
ENSRNOG00000060154	Ddx23	100	84.756	ENSAPEG00000016857	ddx23	92	88.544	Amphiprion_percula
ENSRNOG00000060154	Ddx23	100	85.036	ENSATEG00000016800	ddx23	100	84.428	Anabas_testudineus
ENSRNOG00000060154	Ddx23	99	82.169	ENSAPLG00000002868	DDX23	99	83.133	Anas_platyrhynchos
ENSRNOG00000060154	Ddx23	100	92.205	ENSACAG00000025589	DDX23	96	92.326	Anolis_carolinensis
ENSRNOG00000060154	Ddx23	100	98.780	ENSANAG00000018663	DDX23	100	98.780	Aotus_nancymaae
ENSRNOG00000060154	Ddx23	92	88.048	ENSAMXG00000017597	ddx23	100	85.384	Astyanax_mexicanus
ENSRNOG00000060154	Ddx23	100	98.415	ENSBTAG00000021810	DDX23	100	98.415	Bos_taurus
ENSRNOG00000060154	Ddx23	71	67.642	WBGene00017162	ddx-23	79	67.642	Caenorhabditis_elegans
ENSRNOG00000060154	Ddx23	100	98.659	ENSCJAG00000020775	DDX23	100	98.659	Callithrix_jacchus
ENSRNOG00000060154	Ddx23	100	98.659	ENSCAFG00000025422	DDX23	100	98.659	Canis_familiaris
ENSRNOG00000060154	Ddx23	100	98.659	ENSCAFG00020013383	DDX23	100	98.659	Canis_lupus_dingo
ENSRNOG00000060154	Ddx23	100	98.293	ENSCHIG00000018783	DDX23	100	98.293	Capra_hircus
ENSRNOG00000060154	Ddx23	100	98.415	ENSTSYG00000005429	DDX23	100	98.415	Carlito_syrichta
ENSRNOG00000060154	Ddx23	100	98.171	ENSCPOG00000003278	DDX23	100	98.171	Cavia_porcellus
ENSRNOG00000060154	Ddx23	89	100.000	ENSCCAG00000029177	DDX23	100	100.000	Cebus_capucinus
ENSRNOG00000060154	Ddx23	100	82.073	ENSCATG00000032335	-	100	81.585	Cercocebus_atys
ENSRNOG00000060154	Ddx23	100	98.415	ENSCATG00000039797	DDX23	100	98.415	Cercocebus_atys
ENSRNOG00000060154	Ddx23	100	98.171	ENSCLAG00000002986	DDX23	100	98.171	Chinchilla_lanigera
ENSRNOG00000060154	Ddx23	100	98.415	ENSCSAG00000006240	DDX23	100	98.415	Chlorocebus_sabaeus
ENSRNOG00000060154	Ddx23	84	98.110	ENSCHOG00000009027	DDX23	100	98.110	Choloepus_hoffmanni
ENSRNOG00000060154	Ddx23	100	92.336	ENSCPBG00000019988	DDX23	100	91.971	Chrysemys_picta_bellii
ENSRNOG00000060154	Ddx23	93	69.974	ENSCING00000001913	-	97	70.470	Ciona_intestinalis
ENSRNOG00000060154	Ddx23	83	67.496	ENSCSAVG00000004158	-	100	67.496	Ciona_savignyi
ENSRNOG00000060154	Ddx23	87	99.299	ENSCANG00000040182	DDX23	100	99.299	Colobus_angolensis_palliatus
ENSRNOG00000060154	Ddx23	100	78.441	ENSCANG00000042510	-	100	75.633	Colobus_angolensis_palliatus
ENSRNOG00000060154	Ddx23	100	99.389	ENSCGRG00001015090	Ddx23	100	99.389	Cricetulus_griseus_chok1gshd
ENSRNOG00000060154	Ddx23	100	99.389	ENSCGRG00000016314	Ddx23	100	99.389	Cricetulus_griseus_crigri
ENSRNOG00000060154	Ddx23	83	91.202	ENSCSEG00000020970	ddx23	93	87.166	Cynoglossus_semilaevis
ENSRNOG00000060154	Ddx23	100	85.280	ENSCVAG00000015745	ddx23	93	89.651	Cyprinodon_variegatus
ENSRNOG00000060154	Ddx23	83	92.070	ENSDARG00000021945	ddx23	92	88.275	Danio_rerio
ENSRNOG00000060154	Ddx23	100	98.537	ENSDNOG00000043176	DDX23	100	98.537	Dasypus_novemcinctus
ENSRNOG00000060154	Ddx23	100	98.537	ENSDORG00000012659	Ddx23	100	98.537	Dipodomys_ordii
ENSRNOG00000060154	Ddx23	85	70.323	FBgn0032690	CG10333	86	70.183	Drosophila_melanogaster
ENSRNOG00000060154	Ddx23	99	94.451	ENSETEG00000015816	DDX23	99	92.972	Echinops_telfairi
ENSRNOG00000060154	Ddx23	81	82.556	ENSEBUG00000003319	ddx23	93	82.727	Eptatretus_burgeri
ENSRNOG00000060154	Ddx23	100	98.293	ENSEASG00005000455	DDX23	100	98.293	Equus_asinus_asinus
ENSRNOG00000060154	Ddx23	100	98.415	ENSECAG00000016681	DDX23	100	98.415	Equus_caballus
ENSRNOG00000060154	Ddx23	100	90.146	ENSEEUG00000009658	DDX23	100	90.146	Erinaceus_europaeus
ENSRNOG00000060154	Ddx23	100	82.545	ENSELUG00000015358	ddx23	96	86.388	Esox_lucius
ENSRNOG00000060154	Ddx23	100	98.537	ENSFCAG00000000082	DDX23	100	98.537	Felis_catus
ENSRNOG00000060154	Ddx23	100	91.484	ENSFALG00000000133	DDX23	100	90.511	Ficedula_albicollis
ENSRNOG00000060154	Ddx23	100	98.171	ENSFDAG00000017059	DDX23	100	98.171	Fukomys_damarensis
ENSRNOG00000060154	Ddx23	100	83.922	ENSFHEG00000017499	ddx23	90	91.818	Fundulus_heteroclitus
ENSRNOG00000060154	Ddx23	96	83.736	ENSGMOG00000009592	ddx23	93	85.927	Gadus_morhua
ENSRNOG00000060154	Ddx23	100	94.762	ENSGALG00000032307	DDX23	100	92.692	Gallus_gallus
ENSRNOG00000060154	Ddx23	96	85.860	ENSGAFG00000012366	ddx23	92	88.964	Gambusia_affinis
ENSRNOG00000060154	Ddx23	94	86.050	ENSGACG00000003024	ddx23	99	92.114	Gasterosteus_aculeatus
ENSRNOG00000060154	Ddx23	100	92.214	ENSGAGG00000007790	DDX23	100	91.849	Gopherus_agassizii
ENSRNOG00000060154	Ddx23	100	98.537	ENSGGOG00000015252	DDX23	100	100.000	Gorilla_gorilla
ENSRNOG00000060154	Ddx23	86	90.935	ENSHBUG00000011876	ddx23	100	84.756	Haplochromis_burtoni
ENSRNOG00000060154	Ddx23	100	98.049	ENSHGLG00000004292	DDX23	100	98.049	Heterocephalus_glaber_female
ENSRNOG00000060154	Ddx23	100	98.049	ENSHGLG00100017585	DDX23	100	98.049	Heterocephalus_glaber_male
ENSRNOG00000060154	Ddx23	83	92.082	ENSHCOG00000019338	ddx23	92	88.560	Hippocampus_comes
ENSRNOG00000060154	Ddx23	92	86.985	ENSIPUG00000005247	DDX23	100	84.447	Ictalurus_punctatus
ENSRNOG00000060154	Ddx23	100	98.537	ENSSTOG00000004219	DDX23	100	98.537	Ictidomys_tridecemlineatus
ENSRNOG00000060154	Ddx23	100	98.415	ENSJJAG00000018994	Ddx23	100	98.415	Jaculus_jaculus
ENSRNOG00000060154	Ddx23	96	84.567	ENSKMAG00000012060	ddx23	100	84.063	Kryptolebias_marmoratus
ENSRNOG00000060154	Ddx23	93	87.630	ENSLBEG00000019475	ddx23	93	88.338	Labrus_bergylta
ENSRNOG00000060154	Ddx23	92	92.277	ENSLACG00000016977	DDX23	99	92.578	Latimeria_chalumnae
ENSRNOG00000060154	Ddx23	89	89.821	ENSLOCG00000007385	ddx23	100	86.098	Lepisosteus_oculatus
ENSRNOG00000060154	Ddx23	100	98.293	ENSLAFG00000014227	DDX23	100	98.293	Loxodonta_africana
ENSRNOG00000060154	Ddx23	100	98.415	ENSMFAG00000038666	DDX23	100	98.415	Macaca_fascicularis
ENSRNOG00000060154	Ddx23	100	98.415	ENSMMUG00000008432	DDX23	100	100.000	Macaca_mulatta
ENSRNOG00000060154	Ddx23	100	98.171	ENSMNEG00000040016	DDX23	100	98.171	Macaca_nemestrina
ENSRNOG00000060154	Ddx23	100	81.585	ENSMNEG00000045260	-	100	81.585	Macaca_nemestrina
ENSRNOG00000060154	Ddx23	100	98.415	ENSMLEG00000042846	DDX23	100	98.415	Mandrillus_leucophaeus
ENSRNOG00000060154	Ddx23	100	79.634	ENSMLEG00000035096	-	100	77.561	Mandrillus_leucophaeus
ENSRNOG00000060154	Ddx23	100	85.036	ENSMAMG00000024144	ddx23	100	84.672	Mastacembelus_armatus
ENSRNOG00000060154	Ddx23	86	90.935	ENSMZEG00005026086	ddx23	100	84.756	Maylandia_zebra
ENSRNOG00000060154	Ddx23	100	99.023	ENSMAUG00000012336	Ddx23	100	99.023	Mesocricetus_auratus
ENSRNOG00000060154	Ddx23	100	98.171	ENSMICG00000017541	DDX23	100	98.171	Microcebus_murinus
ENSRNOG00000060154	Ddx23	100	98.657	ENSMOCG00000018987	Ddx23	100	98.657	Microtus_ochrogaster
ENSRNOG00000060154	Ddx23	96	81.505	ENSMMOG00000012406	ddx23	95	83.558	Mola_mola
ENSRNOG00000060154	Ddx23	100	96.951	ENSMODG00000009975	DDX23	100	96.951	Monodelphis_domestica
ENSRNOG00000060154	Ddx23	95	86.497	ENSMALG00000022366	ddx23	92	88.441	Monopterus_albus
ENSRNOG00000060154	Ddx23	100	99.756	MGP_CAROLIEiJ_G0020240	Ddx23	100	99.756	Mus_caroli
ENSRNOG00000060154	Ddx23	100	99.878	ENSMUSG00000003360	Ddx23	100	99.878	Mus_musculus
ENSRNOG00000060154	Ddx23	100	99.756	MGP_PahariEiJ_G0020243	Ddx23	100	99.756	Mus_pahari
ENSRNOG00000060154	Ddx23	100	99.878	MGP_SPRETEiJ_G0021137	Ddx23	100	99.878	Mus_spretus
ENSRNOG00000060154	Ddx23	100	98.537	ENSMPUG00000014739	DDX23	100	98.537	Mustela_putorius_furo
ENSRNOG00000060154	Ddx23	100	98.171	ENSMLUG00000011033	-	100	98.171	Myotis_lucifugus
ENSRNOG00000060154	Ddx23	100	93.780	ENSMLUG00000003683	-	100	93.780	Myotis_lucifugus
ENSRNOG00000060154	Ddx23	100	98.171	ENSNGAG00000019018	Ddx23	100	98.171	Nannospalax_galili
ENSRNOG00000060154	Ddx23	83	92.826	ENSNBRG00000022928	ddx23	100	82.075	Neolamprologus_brichardi
ENSRNOG00000060154	Ddx23	100	91.463	ENSNLEG00000017864	DDX23	100	91.463	Nomascus_leucogenys
ENSRNOG00000060154	Ddx23	100	96.707	ENSMEUG00000009477	DDX23	100	96.707	Notamacropus_eugenii
ENSRNOG00000060154	Ddx23	100	98.537	ENSOPRG00000007170	-	100	98.537	Ochotona_princeps
ENSRNOG00000060154	Ddx23	100	98.293	ENSODEG00000003592	DDX23	100	98.293	Octodon_degus
ENSRNOG00000060154	Ddx23	86	90.935	ENSONIG00000017048	ddx23	100	84.775	Oreochromis_niloticus
ENSRNOG00000060154	Ddx23	100	98.293	ENSOCUG00000001414	DDX23	100	98.293	Oryctolagus_cuniculus
ENSRNOG00000060154	Ddx23	100	82.051	ENSORLG00000012330	ddx23	92	87.449	Oryzias_latipes
ENSRNOG00000060154	Ddx23	100	82.173	ENSORLG00020017586	ddx23	92	87.584	Oryzias_latipes_hni
ENSRNOG00000060154	Ddx23	81	91.528	ENSORLG00015012361	ddx23	88	91.667	Oryzias_latipes_hsok
ENSRNOG00000060154	Ddx23	100	84.812	ENSOMEG00000006453	ddx23	92	88.664	Oryzias_melastigma
ENSRNOG00000060154	Ddx23	100	98.659	ENSOGAG00000016813	DDX23	100	98.659	Otolemur_garnettii
ENSRNOG00000060154	Ddx23	100	98.293	ENSOARG00000019105	DDX23	90	98.293	Ovis_aries
ENSRNOG00000060154	Ddx23	100	71.376	ENSPPAG00000038775	-	100	70.366	Pan_paniscus
ENSRNOG00000060154	Ddx23	100	98.537	ENSPPAG00000037807	DDX23	100	100.000	Pan_paniscus
ENSRNOG00000060154	Ddx23	100	98.537	ENSPPRG00000015345	DDX23	100	98.537	Panthera_pardus
ENSRNOG00000060154	Ddx23	100	98.537	ENSPTIG00000018873	DDX23	100	98.537	Panthera_tigris_altaica
ENSRNOG00000060154	Ddx23	100	98.415	ENSPTRG00000004887	DDX23	100	100.000	Pan_troglodytes
ENSRNOG00000060154	Ddx23	100	74.878	ENSPTRG00000051972	-	100	73.325	Pan_troglodytes
ENSRNOG00000060154	Ddx23	100	98.415	ENSPANG00000019459	DDX23	92	98.415	Papio_anubis
ENSRNOG00000060154	Ddx23	93	86.038	ENSPANG00000035074	-	100	86.038	Papio_anubis
ENSRNOG00000060154	Ddx23	89	88.889	ENSPKIG00000024110	ddx23	100	85.018	Paramormyrops_kingsleyae
ENSRNOG00000060154	Ddx23	100	80.657	ENSPSIG00000002834	DDX23	100	80.779	Pelodiscus_sinensis
ENSRNOG00000060154	Ddx23	100	80.098	ENSPMGG00000010243	ddx23	93	85.115	Periophthalmus_magnuspinnatus
ENSRNOG00000060154	Ddx23	100	99.023	ENSPEMG00000011305	Ddx23	100	99.023	Peromyscus_maniculatus_bairdii
ENSRNOG00000060154	Ddx23	83	84.919	ENSPMAG00000008625	ddx23	99	81.023	Petromyzon_marinus
ENSRNOG00000060154	Ddx23	100	96.585	ENSPCIG00000027691	DDX23	100	96.585	Phascolarctos_cinereus
ENSRNOG00000060154	Ddx23	95	84.942	ENSPFOG00000012159	ddx23	91	89.353	Poecilia_formosa
ENSRNOG00000060154	Ddx23	95	86.100	ENSPLAG00000005052	ddx23	92	89.353	Poecilia_latipinna
ENSRNOG00000060154	Ddx23	96	85.824	ENSPMEG00000015385	ddx23	92	89.353	Poecilia_mexicana
ENSRNOG00000060154	Ddx23	95	86.990	ENSPREG00000007074	ddx23	92	89.367	Poecilia_reticulata
ENSRNOG00000060154	Ddx23	100	98.537	ENSPPYG00000004468	DDX23	97	98.537	Pongo_abelii
ENSRNOG00000060154	Ddx23	100	94.024	ENSPCAG00000002016	DDX23	100	94.024	Procavia_capensis
ENSRNOG00000060154	Ddx23	100	98.537	ENSPCOG00000025915	DDX23	100	100.000	Propithecus_coquereli
ENSRNOG00000060154	Ddx23	100	98.659	ENSPVAG00000009818	DDX23	100	98.659	Pteropus_vampyrus
ENSRNOG00000060154	Ddx23	100	81.563	ENSPNYG00000021038	ddx23	93	85.386	Pundamilia_nyererei
ENSRNOG00000060154	Ddx23	82	90.963	ENSPNAG00000019203	ddx23	89	92.121	Pygocentrus_nattereri
ENSRNOG00000060154	Ddx23	100	79.634	ENSRBIG00000036337	-	100	79.268	Rhinopithecus_bieti
ENSRNOG00000060154	Ddx23	100	85.610	ENSRBIG00000040362	DDX23	100	85.488	Rhinopithecus_bieti
ENSRNOG00000060154	Ddx23	100	98.537	ENSRROG00000028964	DDX23	100	98.537	Rhinopithecus_roxellana
ENSRNOG00000060154	Ddx23	100	77.195	ENSRROG00000045747	-	100	78.049	Rhinopithecus_roxellana
ENSRNOG00000060154	Ddx23	70	37.245	YDR243C	-	81	38.848	Saccharomyces_cerevisiae
ENSRNOG00000060154	Ddx23	100	98.537	ENSSBOG00000025799	DDX23	100	98.537	Saimiri_boliviensis_boliviensis
ENSRNOG00000060154	Ddx23	100	96.707	ENSSHAG00000006590	DDX23	100	96.707	Sarcophilus_harrisii
ENSRNOG00000060154	Ddx23	88	89.931	ENSSFOG00015013273	ddx23	100	85.976	Scleropages_formosus
ENSRNOG00000060154	Ddx23	100	82.260	ENSSMAG00000000529	ddx23	92	87.015	Scophthalmus_maximus
ENSRNOG00000060154	Ddx23	100	84.775	ENSSDUG00000022459	ddx23	100	85.055	Seriola_dumerili
ENSRNOG00000060154	Ddx23	100	84.775	ENSSLDG00000010453	ddx23	100	85.055	Seriola_lalandi_dorsalis
ENSRNOG00000060154	Ddx23	93	100.000	ENSSARG00000004534	DDX23	93	100.000	Sorex_araneus
ENSRNOG00000060154	Ddx23	100	94.532	ENSSPUG00000016044	DDX23	100	93.431	Sphenodon_punctatus
ENSRNOG00000060154	Ddx23	86	90.523	ENSSPAG00000016482	ddx23	92	88.814	Stegastes_partitus
ENSRNOG00000060154	Ddx23	100	98.293	ENSSSCG00000000176	DDX23	100	98.293	Sus_scrofa
ENSRNOG00000060154	Ddx23	100	81.341	ENSTRUG00000000455	ddx23	95	86.170	Takifugu_rubripes
ENSRNOG00000060154	Ddx23	100	94.390	ENSTBEG00000016909	DDX23	100	94.390	Tupaia_belangeri
ENSRNOG00000060154	Ddx23	100	92.073	ENSTTRG00000004604	DDX23	100	92.073	Tursiops_truncatus
ENSRNOG00000060154	Ddx23	100	98.537	ENSUAMG00000027082	DDX23	100	98.537	Ursus_americanus
ENSRNOG00000060154	Ddx23	100	98.537	ENSUMAG00000006538	DDX23	100	98.537	Ursus_maritimus
ENSRNOG00000060154	Ddx23	100	98.659	ENSVVUG00000019648	DDX23	100	98.659	Vulpes_vulpes
ENSRNOG00000060154	Ddx23	100	84.982	ENSXETG00000009807	ddx23	100	84.615	Xenopus_tropicalis
ENSRNOG00000060154	Ddx23	96	83.780	ENSXCOG00000011648	ddx23	93	87.821	Xiphophorus_couchianus
ENSRNOG00000060154	Ddx23	95	86.352	ENSXMAG00000017387	ddx23	92	89.233	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003674	molecular_function	-	ND	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005682	U5 snRNP	-	IEA	Component
GO:0005682	U5 snRNP	-	ISO	Component
GO:0005730	nucleolus	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0008026	ATP-dependent helicase activity	-	ISO	Function
GO:0008150	biological_process	-	ND	Process
GO:0071013	catalytic step 2 spliceosome	-	IEA	Component
GO:0071013	catalytic step 2 spliceosome	-	ISO	Component