EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000060175 (Gene tree)
Gene ID: 312649
Gene Symbol: Tsen2
Alias: LOC312649|RGD1309946
Full Name: tRNA splicing endonuclease subunit 2
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 35201 bases
Position: chr4:147455533-147490733
Accession: 1309946
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000073692	tRNA_int_endo	PF01974.17	2.7e-18	1	1
ENSRNOP00000073692	tRNA_int_endo_N	PF02778.14	4.6e-17	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000081957	-	2124	XM_008763240	ENSRNOP00000073692	463 (aa)	XP_008761462	Q5M954

Gene Model

Click here to download ENSRNOG00000060175's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000060175's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000060175	Tsen2	100	69.296	ENSG00000154743	TSEN2	99	87.500	Homo_sapiens
ENSRNOG00000060175	Tsen2	63	55.063	ENSAPOG00000019374	-	100	35.729	Acanthochromis_polyacanthus
ENSRNOG00000060175	Tsen2	100	69.053	ENSAMEG00000004748	TSEN2	100	69.053	Ailuropoda_melanoleuca
ENSRNOG00000060175	Tsen2	66	59.884	ENSACIG00000022861	tsen2	99	54.598	Amphilophus_citrinellus
ENSRNOG00000060175	Tsen2	66	57.225	ENSAOCG00000007248	tsen2	73	57.225	Amphiprion_ocellaris
ENSRNOG00000060175	Tsen2	68	61.538	ENSAPEG00000021947	tsen2	99	39.457	Amphiprion_percula
ENSRNOG00000060175	Tsen2	97	39.407	ENSATEG00000009406	tsen2	99	40.430	Anabas_testudineus
ENSRNOG00000060175	Tsen2	87	52.038	ENSAPLG00000014992	TSEN2	100	52.038	Anas_platyrhynchos
ENSRNOG00000060175	Tsen2	98	51.739	ENSACAG00000013345	TSEN2	100	52.966	Anolis_carolinensis
ENSRNOG00000060175	Tsen2	100	68.870	ENSANAG00000026891	TSEN2	100	68.870	Aotus_nancymaae
ENSRNOG00000060175	Tsen2	68	63.187	ENSACLG00000014303	tsen2	99	40.043	Astatotilapia_calliptera
ENSRNOG00000060175	Tsen2	99	44.969	ENSAMXG00000043484	tsen2	99	44.969	Astyanax_mexicanus
ENSRNOG00000060175	Tsen2	100	72.727	ENSBTAG00000037980	TSEN2	89	72.727	Bos_taurus
ENSRNOG00000060175	Tsen2	70	85.780	ENSCJAG00000039013	TSEN2	100	85.780	Callithrix_jacchus
ENSRNOG00000060175	Tsen2	100	68.499	ENSCAFG00000004987	TSEN2	100	68.499	Canis_familiaris
ENSRNOG00000060175	Tsen2	100	68.499	ENSCAFG00020007250	TSEN2	100	68.499	Canis_lupus_dingo
ENSRNOG00000060175	Tsen2	100	64.871	ENSCHIG00000013772	TSEN2	100	64.871	Capra_hircus
ENSRNOG00000060175	Tsen2	100	67.591	ENSTSYG00000010816	TSEN2	100	67.591	Carlito_syrichta
ENSRNOG00000060175	Tsen2	100	63.771	ENSCPOG00000007932	-	100	63.771	Cavia_porcellus
ENSRNOG00000060175	Tsen2	100	68.657	ENSCCAG00000037851	TSEN2	100	68.657	Cebus_capucinus
ENSRNOG00000060175	Tsen2	100	63.404	ENSCATG00000031911	TSEN2	100	63.404	Cercocebus_atys
ENSRNOG00000060175	Tsen2	100	64.968	ENSCLAG00000011090	TSEN2	100	64.968	Chinchilla_lanigera
ENSRNOG00000060175	Tsen2	100	66.596	ENSCSAG00000009822	TSEN2	100	66.596	Chlorocebus_sabaeus
ENSRNOG00000060175	Tsen2	75	82.353	ENSCHOG00000009111	TSEN2	74	82.353	Choloepus_hoffmanni
ENSRNOG00000060175	Tsen2	100	53.878	ENSCPBG00000026359	TSEN2	100	49.476	Chrysemys_picta_bellii
ENSRNOG00000060175	Tsen2	100	69.083	ENSCANG00000035550	TSEN2	100	69.083	Colobus_angolensis_palliatus
ENSRNOG00000060175	Tsen2	100	88.147	ENSCGRG00001017681	Tsen2	100	88.147	Cricetulus_griseus_chok1gshd
ENSRNOG00000060175	Tsen2	100	88.147	ENSCGRG00000010015	Tsen2	100	88.147	Cricetulus_griseus_crigri
ENSRNOG00000060175	Tsen2	99	38.412	ENSCSEG00000020407	tsen2	99	38.412	Cynoglossus_semilaevis
ENSRNOG00000060175	Tsen2	100	67.585	ENSDNOG00000038504	TSEN2	100	67.585	Dasypus_novemcinctus
ENSRNOG00000060175	Tsen2	100	63.067	ENSDORG00000003395	Tsen2	100	63.067	Dipodomys_ordii
ENSRNOG00000060175	Tsen2	72	76.793	ENSETEG00000003098	TSEN2	74	76.793	Echinops_telfairi
ENSRNOG00000060175	Tsen2	100	35.400	ENSEBUG00000014614	TSEN2	99	35.400	Eptatretus_burgeri
ENSRNOG00000060175	Tsen2	100	68.230	ENSEASG00005014763	TSEN2	100	68.230	Equus_asinus_asinus
ENSRNOG00000060175	Tsen2	100	68.657	ENSECAG00000012813	TSEN2	100	68.657	Equus_caballus
ENSRNOG00000060175	Tsen2	100	43.558	ENSELUG00000013262	tsen2	100	43.558	Esox_lucius
ENSRNOG00000060175	Tsen2	100	65.948	ENSFCAG00000025500	TSEN2	100	65.948	Felis_catus
ENSRNOG00000060175	Tsen2	100	55.462	ENSFALG00000000012	TSEN2	100	55.462	Ficedula_albicollis
ENSRNOG00000060175	Tsen2	100	64.516	ENSFDAG00000008132	TSEN2	100	64.516	Fukomys_damarensis
ENSRNOG00000060175	Tsen2	100	53.602	ENSGALG00000004981	TSEN2	100	53.602	Gallus_gallus
ENSRNOG00000060175	Tsen2	59	59.589	ENSGAFG00000019542	tsen2	76	59.589	Gambusia_affinis
ENSRNOG00000060175	Tsen2	68	61.326	ENSGACG00000003387	tsen2	74	61.326	Gasterosteus_aculeatus
ENSRNOG00000060175	Tsen2	100	53.053	ENSGAGG00000022560	TSEN2	100	53.053	Gopherus_agassizii
ENSRNOG00000060175	Tsen2	100	69.083	ENSGGOG00000012488	TSEN2	100	69.083	Gorilla_gorilla
ENSRNOG00000060175	Tsen2	68	63.736	ENSHBUG00000009039	tsen2	99	40.257	Haplochromis_burtoni
ENSRNOG00000060175	Tsen2	100	65.806	ENSHGLG00000000740	TSEN2	100	65.806	Heterocephalus_glaber_female
ENSRNOG00000060175	Tsen2	100	65.806	ENSHGLG00100001532	TSEN2	100	65.806	Heterocephalus_glaber_male
ENSRNOG00000060175	Tsen2	99	43.478	ENSIPUG00000011651	tsen2	99	43.685	Ictalurus_punctatus
ENSRNOG00000060175	Tsen2	100	64.468	ENSSTOG00000000538	TSEN2	100	65.532	Ictidomys_tridecemlineatus
ENSRNOG00000060175	Tsen2	100	45.702	ENSLACG00000008466	TSEN2	100	45.702	Latimeria_chalumnae
ENSRNOG00000060175	Tsen2	100	45.951	ENSLOCG00000013958	tsen2	100	45.951	Lepisosteus_oculatus
ENSRNOG00000060175	Tsen2	100	65.885	ENSLAFG00000009300	TSEN2	100	65.885	Loxodonta_africana
ENSRNOG00000060175	Tsen2	100	69.296	ENSMFAG00000038583	TSEN2	100	69.296	Macaca_fascicularis
ENSRNOG00000060175	Tsen2	100	69.296	ENSMMUG00000007195	TSEN2	100	69.296	Macaca_mulatta
ENSRNOG00000060175	Tsen2	100	69.296	ENSMNEG00000025898	TSEN2	100	69.296	Macaca_nemestrina
ENSRNOG00000060175	Tsen2	100	66.738	ENSMLEG00000038210	TSEN2	100	66.738	Mandrillus_leucophaeus
ENSRNOG00000060175	Tsen2	68	62.431	ENSMAMG00000009733	tsen2	99	40.084	Mastacembelus_armatus
ENSRNOG00000060175	Tsen2	100	54.873	ENSMGAG00000005015	TSEN2	100	54.873	Meleagris_gallopavo
ENSRNOG00000060175	Tsen2	100	70.149	ENSMICG00000016672	TSEN2	100	70.149	Microcebus_murinus
ENSRNOG00000060175	Tsen2	100	85.529	ENSMOCG00000020824	Tsen2	100	85.529	Microtus_ochrogaster
ENSRNOG00000060175	Tsen2	100	60.430	ENSMODG00000006249	TSEN2	100	60.430	Monodelphis_domestica
ENSRNOG00000060175	Tsen2	100	88.273	MGP_CAROLIEiJ_G0028752	Tsen2	100	89.126	Mus_caroli
ENSRNOG00000060175	Tsen2	100	88.412	ENSMUSG00000042389	Tsen2	100	88.841	Mus_musculus
ENSRNOG00000060175	Tsen2	100	88.627	MGP_PahariEiJ_G0022503	Tsen2	100	88.627	Mus_pahari
ENSRNOG00000060175	Tsen2	100	88.412	MGP_SPRETEiJ_G0029780	Tsen2	100	88.412	Mus_spretus
ENSRNOG00000060175	Tsen2	100	66.807	ENSMPUG00000017182	TSEN2	100	66.807	Mustela_putorius_furo
ENSRNOG00000060175	Tsen2	100	68.017	ENSMLUG00000017641	TSEN2	100	68.017	Myotis_lucifugus
ENSRNOG00000060175	Tsen2	97	56.222	ENSNLEG00000033166	-	100	56.222	Nomascus_leucogenys
ENSRNOG00000060175	Tsen2	100	66.738	ENSNLEG00000004696	TSEN2	100	66.738	Nomascus_leucogenys
ENSRNOG00000060175	Tsen2	63	83.511	ENSMEUG00000014148	-	62	83.511	Notamacropus_eugenii
ENSRNOG00000060175	Tsen2	100	62.047	ENSOPRG00000003456	TSEN2	100	62.047	Ochotona_princeps
ENSRNOG00000060175	Tsen2	100	63.248	ENSODEG00000002629	TSEN2	100	63.248	Octodon_degus
ENSRNOG00000060175	Tsen2	68	63.536	ENSONIG00000000278	tsen2	99	40.471	Oreochromis_niloticus
ENSRNOG00000060175	Tsen2	100	54.310	ENSOANG00000011648	-	100	54.310	Ornithorhynchus_anatinus
ENSRNOG00000060175	Tsen2	100	66.667	ENSOCUG00000013203	TSEN2	96	66.667	Oryctolagus_cuniculus
ENSRNOG00000060175	Tsen2	99	37.581	ENSORLG00000026661	-	99	37.581	Oryzias_latipes
ENSRNOG00000060175	Tsen2	99	37.768	ENSORLG00020006129	-	99	37.768	Oryzias_latipes_hni
ENSRNOG00000060175	Tsen2	99	37.179	ENSORLG00015000801	-	99	37.179	Oryzias_latipes_hsok
ENSRNOG00000060175	Tsen2	99	37.473	ENSOMEG00000001692	tsen2	99	37.473	Oryzias_melastigma
ENSRNOG00000060175	Tsen2	100	66.738	ENSOGAG00000002976	-	100	66.738	Otolemur_garnettii
ENSRNOG00000060175	Tsen2	100	60.897	ENSOGAG00000028352	-	100	60.897	Otolemur_garnettii
ENSRNOG00000060175	Tsen2	100	65.086	ENSOARG00000016087	TSEN2	91	65.086	Ovis_aries
ENSRNOG00000060175	Tsen2	100	69.083	ENSPPAG00000035317	TSEN2	100	69.083	Pan_paniscus
ENSRNOG00000060175	Tsen2	98	50.110	ENSPPAG00000034639	-	99	50.110	Pan_paniscus
ENSRNOG00000060175	Tsen2	100	64.871	ENSPTIG00000021018	TSEN2	100	64.871	Panthera_tigris_altaica
ENSRNOG00000060175	Tsen2	100	69.083	ENSPTRG00000014633	TSEN2	100	69.083	Pan_troglodytes
ENSRNOG00000060175	Tsen2	98	51.522	ENSPTRG00000050820	-	100	51.522	Pan_troglodytes
ENSRNOG00000060175	Tsen2	100	69.510	ENSPANG00000013415	TSEN2	100	69.510	Papio_anubis
ENSRNOG00000060175	Tsen2	100	47.357	ENSPKIG00000024801	tsen2	100	47.479	Paramormyrops_kingsleyae
ENSRNOG00000060175	Tsen2	99	54.507	ENSPSIG00000010669	-	96	54.507	Pelodiscus_sinensis
ENSRNOG00000060175	Tsen2	100	81.290	ENSPEMG00000013175	Tsen2	100	81.290	Peromyscus_maniculatus_bairdii
ENSRNOG00000060175	Tsen2	100	59.119	ENSPCIG00000002191	TSEN2	100	59.831	Phascolarctos_cinereus
ENSRNOG00000060175	Tsen2	73	54.286	ENSPFOG00000012459	tsen2	99	38.380	Poecilia_formosa
ENSRNOG00000060175	Tsen2	73	54.286	ENSPLAG00000013787	tsen2	99	38.166	Poecilia_latipinna
ENSRNOG00000060175	Tsen2	62	56.962	ENSPMEG00000002687	tsen2	82	56.962	Poecilia_mexicana
ENSRNOG00000060175	Tsen2	100	69.083	ENSPPYG00000013647	TSEN2	100	69.083	Pongo_abelii
ENSRNOG00000060175	Tsen2	100	60.470	ENSPCAG00000003542	TSEN2	100	60.470	Procavia_capensis
ENSRNOG00000060175	Tsen2	100	68.856	ENSPCOG00000019328	TSEN2	100	68.856	Propithecus_coquereli
ENSRNOG00000060175	Tsen2	81	84.018	ENSPVAG00000005820	TSEN2	81	84.018	Pteropus_vampyrus
ENSRNOG00000060175	Tsen2	99	45.399	ENSPNAG00000008203	tsen2	99	45.399	Pygocentrus_nattereri
ENSRNOG00000060175	Tsen2	100	69.296	ENSRBIG00000033133	TSEN2	100	69.296	Rhinopithecus_bieti
ENSRNOG00000060175	Tsen2	100	69.296	ENSRROG00000041156	TSEN2	100	69.296	Rhinopithecus_roxellana
ENSRNOG00000060175	Tsen2	100	65.458	ENSSBOG00000035499	TSEN2	100	65.458	Saimiri_boliviensis_boliviensis
ENSRNOG00000060175	Tsen2	100	60.127	ENSSHAG00000010530	TSEN2	100	60.127	Sarcophilus_harrisii
ENSRNOG00000060175	Tsen2	74	63.679	ENSSFOG00015001309	tsen2	100	45.824	Scleropages_formosus
ENSRNOG00000060175	Tsen2	68	62.222	ENSSMAG00000006406	-	99	40.568	Scophthalmus_maximus
ENSRNOG00000060175	Tsen2	99	40.249	ENSSDUG00000018175	tsen2	99	40.928	Seriola_dumerili
ENSRNOG00000060175	Tsen2	84	33.666	ENSSLDG00000022171	-	93	33.666	Seriola_lalandi_dorsalis
ENSRNOG00000060175	Tsen2	100	57.053	ENSSPUG00000018099	TSEN2	100	57.053	Sphenodon_punctatus
ENSRNOG00000060175	Tsen2	99	34.188	ENSSPAG00000021756	-	99	34.188	Stegastes_partitus
ENSRNOG00000060175	Tsen2	100	67.447	ENSSSCG00000011580	TSEN2	100	67.447	Sus_scrofa
ENSRNOG00000060175	Tsen2	100	57.531	ENSTGUG00000004044	TSEN2	100	57.620	Taeniopygia_guttata
ENSRNOG00000060175	Tsen2	64	56.707	ENSTRUG00000004124	-	79	56.707	Takifugu_rubripes
ENSRNOG00000060175	Tsen2	99	37.234	ENSTNIG00000005222	-	99	37.234	Tetraodon_nigroviridis
ENSRNOG00000060175	Tsen2	80	77.451	ENSTBEG00000011740	TSEN2	81	77.451	Tupaia_belangeri
ENSRNOG00000060175	Tsen2	100	64.894	ENSTTRG00000016566	TSEN2	100	64.894	Tursiops_truncatus
ENSRNOG00000060175	Tsen2	100	68.288	ENSUMAG00000017610	TSEN2	100	68.288	Ursus_maritimus
ENSRNOG00000060175	Tsen2	67	61.047	ENSVPAG00000011061	-	75	61.047	Vicugna_pacos
ENSRNOG00000060175	Tsen2	100	68.499	ENSVVUG00000015253	TSEN2	100	68.499	Vulpes_vulpes
ENSRNOG00000060175	Tsen2	80	46.632	ENSXETG00000025146	tsen2	99	46.632	Xenopus_tropicalis
ENSRNOG00000060175	Tsen2	59	58.389	ENSXCOG00000017262	tsen2	78	58.389	Xiphophorus_couchianus
ENSRNOG00000060175	Tsen2	59	58.784	ENSXMAG00000012479	tsen2	77	58.784	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000213	tRNA-intron endonuclease activity	21873635.	IBA	Function
GO:0000214	tRNA-intron endonuclease complex	21873635.	IBA	Component
GO:0000379	tRNA-type intron splice site recognition and cleavage	21873635.	IBA	Process
GO:0003674	molecular_function	-	ND	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005730	nucleolus	-	IEA	Component
GO:0005813	centrosome	-	IEA	Component
GO:0005813	centrosome	-	ISO	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	-	ISO	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0008150	biological_process	-	ND	Process
GO:0016829	lyase activity	-	IEA	Function
GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	-	IEA	Process